[Cdd-commits] r426 - in projects/med/trunk/debian-med: . menu/bio menu/imaging

[CDD Subversion Commit]

Author: tille
Date: Tue Oct 10 11:48:34 2006
New Revision: 426

Added:
   projects/med/trunk/debian-med/menu/bio/poa.txt
   projects/med/trunk/debian-med/menu/imaging/nifti-bin.txt
Modified:
   projects/med/trunk/debian-med/VERSION
Log:
Menuentries for new dependencies, increased version number


Modified: projects/med/trunk/debian-med/VERSION
==============================================================================
--- projects/med/trunk/debian-med/VERSION	(original)
+++ projects/med/trunk/debian-med/VERSION	Tue Oct 10 11:48:34 2006
@@ -1 +1 @@
-0.11
+0.12

Added: projects/med/trunk/debian-med/menu/bio/poa.txt
==============================================================================
--- (empty file)
+++ projects/med/trunk/debian-med/menu/bio/poa.txt	Tue Oct 10 11:48:34 2006
@@ -0,0 +1,18 @@
+Partial Order Alignment for multiple sequence alignment
+
+Some information about t-coffee from the Debian-Med project.
+
+ POA is Partial Order Alignment, a fast program for multiple sequence
+ alignment (MSA) in bioinformatics. Its advantages are speed,
+ scalability, sensitivity, and the superior ability to handle branching
+ / indels in the alignment. Partial order alignment is an approach to
+ MSA, which can be combined with existing methods such as progressive
+ alignment. POA optimally aligns a pair of MSAs and which therefore can
+ be applied directly to progressive alignment methods such as CLUSTAL.
+ For large alignments, Progressive POA is 10-30 times faster than
+ CLUSTALW. POA is published in Bioinformatics. 2004 Jul
+ 10;20(10):1546-56.
+
+See also: man poa
+
+Homepage: http://www.bioinformatics.ucla.edu/poa

Added: projects/med/trunk/debian-med/menu/imaging/nifti-bin.txt
==============================================================================
--- (empty file)
+++ projects/med/trunk/debian-med/menu/imaging/nifti-bin.txt	Tue Oct 10 11:48:34 2006
@@ -0,0 +1,17 @@
+Tool for reading and writing NIfTI-1 MRI and fMRI brain images
+
+Some information about nifti-bin from the Debian-Med project.
+
+ Niftilib is a set of i/o libraries for reading and writing files in the
+ NIfTI-1 data format. NIfTI-1 is a binary file format for storing medical
+ image data, e.g. magnetic resonance image (MRI) and functional MRI (fMRI)
+ brain images.
+
+Please read:
+  man nifti_tool
+  man nifti_stats
+  man nifti1_test
+
+Further reading:
+      http://niftilib.sourceforge.net/
+      http://nifti.nimh.nih.gov/