[Cdd-commits] r457 - in projects/med/trunk/debian-med: debian tasks

CDD Subversion Commit noreply at alioth.debian.org
Wed Aug 29 20:34:04 UTC 2007


Author: tille
Date: Wed Aug 29 20:34:04 2007
New Revision: 457

Added:
   projects/med/trunk/debian-med/debian/control
Modified:
   projects/med/trunk/debian-med/debian/changelog
   projects/med/trunk/debian-med/tasks/bio
   projects/med/trunk/debian-med/tasks/imaging
   projects/med/trunk/debian-med/tasks/imaging-dev
   projects/med/trunk/debian-med/tasks/practice
Log:
Preparing new release with new dependencies


Modified: projects/med/trunk/debian-med/debian/changelog
==============================================================================
--- projects/med/trunk/debian-med/debian/changelog	(original)
+++ projects/med/trunk/debian-med/debian/changelog	Wed Aug 29 20:34:04 2007
@@ -1,7 +1,15 @@
 debian-med (0.14) unstable; urgency=low
 
-  * Builded using new cdd-tools
-
+  * Builded using new cdd-dev 0.4
+    - med-common is now renamed to med-config
+    - additional package med-tasks
+  * med-bio: added emboss
+  * med-imaging: amide, dicomnifti, imagej, python-nifti
+                 decreased paul from Recommends to Suggests
+  * med-imaging-dev: cimg-dev
+                 decreased libgtkimreg-dev from Recommends to Suggests
+  * med-practice: libchipcard3c1, libchipcard3d0
+  
  -- Andreas Tille <tille at debian.org>  Sat, 11 Aug 2007 17:50:29 +0200
 
 debian-med (0.13) unstable; urgency=low

Added: projects/med/trunk/debian-med/debian/control
==============================================================================
--- (empty file)
+++ projects/med/trunk/debian-med/debian/control	Wed Aug 29 20:34:04 2007
@@ -0,0 +1,145 @@
+Source: debian-med
+Section: misc
+Priority: extra
+Maintainer: Andreas Tille <tille at debian.org>
+Uploaders: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Build-Depends: debhelper (>= 5)
+Build-Depends-Indep: cdd-dev (>= 0.4)
+Standards-Version: 3.7.2
+
+Package: med-tasks
+Architecture: all
+Depends: tasksel (>= 2.07)
+Description: Debian-Med tasks for tasksel
+ This package provides Debian-Med tasks in tasksel.
+
+Package: med-config
+Architecture: all
+Depends: adduser, ${misc:Depends}, menu, cdd-common (>= 0.4)
+Conflicts: med-common
+Replaces: med-common
+Provides: med-common
+Description: Debian-Med Project config package
+ This package provides the basic infrastructure of all med-* packages and is
+ needed by them.
+ .
+ This package provides some files which are common to all med-* packages.
+ Moreover it introduces a method to handle system users in a group
+ med using debconf.
+ .
+ Other packages in Debian-Med Project are:
+ .
+  * med-bio      for biological research
+  * med-cms      for publicating a medical site on the internet
+  * med-dent     for dental medicine
+  * med-imaging  for image processing
+  * med-pharmacy for pharmaceutical research
+  * med-physics  for radiation oncology, diagnostics imaging and related fields
+  * med-practice for general practitioners
+  * med-tools    contains miscellaneous tools
+ .
+ Note: All these packages are so called metapackages. This means they are not
+ executable programs, but only links to other packages. This way you will
+ conveniently get all the non-commercial medical software which is available
+ for Debian GNU/Linux.
+
+Package: med-bio
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: adun.app, amap-align, biosquid, blast2, boxshade, dialign, fastdnaml, fastlink, garlic, gdpc, gff2aplot, gff2ps, ghemical, gromacs, hmmer, kalign, loki, melting, mipe, mummer, muscle, ncbi-epcr, ncbi-tools-bin, ncbi-tools-x11, njplot, perlprimer, poa, primer3, probcons, proda, pymol, r-cran-qtl, rasmol, readseq, seaview, sibsim4, sigma-align, sim4, t-coffee, tigr-glimmer, tree-puzzle | tree-ppuzzle, treeviewx, wise
+Suggests: arb, bugsx, clustalw, clustalw-mpi, clustalx, molphy, mozilla-biofox, phylip, textopo, treetool
+Description: Debian-Med micro-biology packages
+ This meta package will install Debian packages related to molecular biology,
+ structural biology and bioinformatics for use in life sciences.  Please note
+ that there also recommended and only suggested packages which are not
+ installed in any circumstance but only if the user asks for installing these.
+
+Package: med-bio-dev
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: bioperl, libbio-ruby, libncbi6-dev, libvibrant6-dev, mcl, python-biopython
+Suggests: biomode, r-base-core
+Description: Debian-Med packages for development of micro-biology applications
+ This meta package will install Debian packages which might be helpful
+ for development of applications for micro-biological research.   Please note
+ that there also recommended and only suggested packages which are not
+ installed in any circumstance but only if the user asks for installing these.
+
+Package: med-cms
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: zope-zms
+Description: Debian-Med content management systems
+ This meta package will install packages which are useful to build a
+ content management system for medical care.    Please note
+ that there also recommended and only suggested packages which are not
+ installed in any circumstance but only if the user asks for installing
+ these.
+
+Package: med-imaging
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: ctn, ctsim, dcmtk, dicomnifti, libfslio0, libniftiio0, medcon, minc-tools, nifti-bin, paul, pngquant, xmedcon
+Suggests: imagemagick
+Description: Debian-Med imaging packages
+ This meta package will install Debian packages which might be useful in medical
+ image processing.    Please note
+ that there also recommended and only suggested packages which are not
+ installed in any circumstance but only if the user asks for installing these.
+
+Package: med-imaging-dev
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: ctn-dev, libfslio0-dev, libgtkimreg-dev, libmdc2-dev, libminc0-dev, libniftiio0-dev
+Suggests: libnifti-doc
+Description: Debian-Med packages for medical image development
+ This meta package will install Debian packages which might be useful 
+ for developing applications for medical image processing.    Please note
+ that there also recommended and only suggested packages which are not
+ installed in any circumstance but only if the user asks for installing these.
+
+Package: med-pharmacy
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: chemtool
+Description: Debian-Med packages for pharmaceutical research
+ This meta package contains dependencies for a
+ collection of software and documentation which is useful for
+ pharmaceutical research.    Please note  that there also recommended
+ and only suggested packages which are not  installed in any circumstance
+ but only if the user asks for installing these.
+
+Package: med-physics
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: octave | octave2.1, paw, paw++, r-base | r-base-core
+Suggests: paw-demos
+Description: Debian-Med packages for medical physicists
+ This meta package contains dependencies for a
+ collection of software and documentation which is useful for
+ medical physicists in radiation oncology, diagnostics imaging
+ and related fields.    Please note
+ that there also recommended and only suggested packages which are not
+ installed in any circumstance but only if the user asks for installing
+ these.
+
+Package: med-practice
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: gnumed-client
+Description: Debian-Med packages for practice management
+ This meta package contains dependencies for a
+ collection of software which might be helpful for
+ practitioners to manage their practice.
+
+Package: med-tools
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: cycle, mencal
+Suggests: cl-pubmed
+Description: Debian-Med several tools
+ This meta package will install tools for several purposes in health care.
+ Currently it just depends from mencal.    Please note
+ that there also recommended and only suggested packages which are not
+ installed in any circumstance but only if the user asks for installing these.
+

Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Wed Aug 29 20:34:04 2007
@@ -14,7 +14,7 @@
 Depends:     fastlink, loki, r-cran-qtl
 Why:         Genetics.
 
-Depends:     amap-align, blast2, boxshade, dialign, gff2aplot, hmmer, kalign, mummer, muscle, poa, probcons, proda, \
+Depends:     amap-align, blast2, boxshade, dialign, gff2aplot, emboss, hmmer, kalign, mummer, muscle, poa, probcons, proda, \
              seaview, sim4, sibsim4, sigma-align, t-coffee, wise
 Why:         Sequence alignments and related programs.
 Depends:     arb, clustalw | clustalw-mpi, clustalx

Modified: projects/med/trunk/debian-med/tasks/imaging
==============================================================================
--- projects/med/trunk/debian-med/tasks/imaging	(original)
+++ projects/med/trunk/debian-med/tasks/imaging	Wed Aug 29 20:34:04 2007
@@ -5,8 +5,8 @@
  that there also recommended and only suggested packages which are not
  installed in any circumstance but only if the user asks for installing these.
 
-Depends: ctsim, ctn, minc-tools, medcon, xmedcon, dcmtk
-Recommends: pngquant, paul 
-Suggests: imagemagick
+Depends: amide, ctsim, ctn, dicomnifti, imagej, minc-tools, medcon, python-nifti, xmedcon, dcmtk
+Recommends: pngquant
+Suggests: imagemagick, paul
 
 Depends: libfslio0, libniftiio0, nifti-bin, dicomnifti

Modified: projects/med/trunk/debian-med/tasks/imaging-dev
==============================================================================
--- projects/med/trunk/debian-med/tasks/imaging-dev	(original)
+++ projects/med/trunk/debian-med/tasks/imaging-dev	Wed Aug 29 20:34:04 2007
@@ -5,8 +5,8 @@
  that there also recommended and only suggested packages which are not
  installed in any circumstance but only if the user asks for installing these.
 
-Depends: libgtkimreg-dev, ctn-dev, libminc0-dev, libmdc2-dev
+Depends: ctn-dev, cimg-dev, libminc0-dev, libmdc2-dev
 
 Depends: libfslio0-dev, libniftiio0-dev
 
-Suggests: libnifti-doc
+Suggests: libgtkimreg-dev, libnifti-doc

Modified: projects/med/trunk/debian-med/tasks/practice
==============================================================================
--- projects/med/trunk/debian-med/tasks/practice	(original)
+++ projects/med/trunk/debian-med/tasks/practice	Wed Aug 29 20:34:04 2007
@@ -5,3 +5,6 @@
  practitioners to manage their practice.
 
 Depends: gnumed-client
+
+Recommends: libchipcard3c1, libchipcard3d0
+Why: Reading German "Gesundheitskarte"



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