[Cdd-commits] r501 - in projects/med/trunk/debian-med: debian tasks

Tue Dec 11 16:11:09 UTC 2007

Author: tille
Date: Tue Dec 11 16:11:09 2007
New Revision: 501

Modified:
   projects/med/trunk/debian-med/debian/changelog
   projects/med/trunk/debian-med/tasks/bio
   projects/med/trunk/debian-med/tasks/bio-dev
   projects/med/trunk/debian-med/tasks/imaging
   projects/med/trunk/debian-med/tasks/imaging-dev
Log:
Added some prospective projects


Modified: projects/med/trunk/debian-med/debian/changelog
==============================================================================

--- projects/med/trunk/debian-med/debian/changelog	(original)
+++ projects/med/trunk/debian-med/debian/changelog	Tue Dec 11 16:11:09 2007
@@ -1,7 +1,13 @@
 debian-med (0.16) unstable; urgency=low
 
   * New upstream version
+  * Standards-Version: 3.7.3 (no changes needed)
+  * Added Vcs-Browser / Vcs-Svn tags
   * tasks/imaging: Added Dr. Jekyll as prospective package
+  * tasks/imaging(-dev): libvolpack1(-dev),
+    odin as prospective package
+  * tasks/bio: Added ballview as prospective package
+  * tasks/bio-dev: Added BioClipse as prospective package
 
  -- Andreas Tille <tille at debian.org>  Sun, 09 Dec 2007 11:43:52 +0100
 

Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Tue Dec 11 16:11:09 2007
@@ -103,4 +103,23 @@
  Cytoscape is a bioinformatics software platform for visualizing molecular
  interaction networks and integrating these interactions with gene expression
  profiles and other state data.  Additional features are available as plugins.
- 
\ No newline at end of file
+
+Depends: ballview
+Homepage: www.BALLView.org
+License: LGPL
+Pkg-URL: http://mentors.debian.net/debian/pool/main/b/ballview/
+Pkg-Description: free molecular modeling and molecular graphics tool
+ BALLView provides fast OpenGL-based visualization of molecular structures,
+ molecular mechanics methods (minimization, MD simulation using the
+ AMBER, CHARMM, and MMFF94 force fields), calculation and visualization
+ of electrostatic properties (FDPB) and molecular editing features.
+ .
+ BALLView is based on BALL (Biochemical Algorithms Library) ,
+ which is currently being developed in the groups of Hans-Peter Lenhof
+ (Saarland University, Saarbruecken, Germany) and Oliver Kohlbacher
+ (University of Tuebingen, Germany). BALL is an application framework
+ in C++ that has been specifically designed for rapid software
+ development in Molecular Modeling and Computational Molecular Biology.
+ It provides an extensive set of data structures as well as classes
+ for Molecular Mechanics, advanced solvation methods, comparison and
+ analysis of protein structures, file import/export, and visualization.

Modified: projects/med/trunk/debian-med/tasks/bio-dev
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-dev	(original)
+++ projects/med/trunk/debian-med/tasks/bio-dev	Tue Dec 11 16:11:09 2007
@@ -14,3 +14,24 @@
 Depends: python-biopython
 
 Depends: libbio-ruby
+
+Depends: bioclipse
+Homepage: http://www.bioclipse.net/
+License: Eclipse Public License (EPL) + exception
+Pkg-Description: platform for chemo- and bioinformatics based on Eclipse
+ The Bioclipse project is aimed at creating a Java-based, open source,
+ visual platform for chemo- and bioinformatics based on the Eclipse
+ Rich Client Platform (RCP). Bioclipse, as any RCP application, is based
+ on a plugin architecture that inherits basic functionality and visual
+ interfaces from Eclipse, such as help system, software updates,
+ preferences, cross-platform deployment etc.
+ .
+ Bioclipse will provide functionality for chemo- and bioinformatics,
+ and extension points that easily can be extended by plugins to provide
+ added functionality. The first version of Bioclipse includes a
+ CDK-plugin (bc_cdk) to provide a chemoinformatic backend, a Jmol-plugin
+ (bc_jmol) for 3D-visualization and a general logging plugin. To stay
+ updated on upcoming features, releases, new plugins etc, please register
+ for the mailing list bioclipse-announce. The development is best
+ followed on the Bioclipse Wiki where we document the progress and
+ ideas of the development on a daily basis. 

Modified: projects/med/trunk/debian-med/tasks/imaging
==============================================================================
--- projects/med/trunk/debian-med/tasks/imaging	(original)
+++ projects/med/trunk/debian-med/tasks/imaging	Tue Dec 11 16:11:09 2007
@@ -9,7 +9,7 @@
 Recommends: pngquant
 Suggests: imagemagick, paul
 
-Depends: libfslio0, libniftiio1, nifti-bin, dicomnifti
+Depends: libfslio0, libniftiio1, nifti-bin, dicomnifti, libvolpack1
 
 Depends: bioimagesuite
 Homepage: http://www.bioimagesuite.org/
@@ -49,4 +49,5 @@
  Voxel elements (=voxels) and pixel ("picture element") are viewed
  as data sets and can be processed by this program as kind of
  a final polishing process.
- 
\ No newline at end of file
+Why: Hint givven ba Petter Reinholdtsen 
+

Modified: projects/med/trunk/debian-med/tasks/imaging-dev
==============================================================================
--- projects/med/trunk/debian-med/tasks/imaging-dev	(original)
+++ projects/med/trunk/debian-med/tasks/imaging-dev	Tue Dec 11 16:11:09 2007
@@ -13,3 +13,17 @@
 Suggests: insighttoolkit-examples
 
 Suggests: libgtkimreg-dev, libnifti-doc
+
+Depends: libvolpack1-dev
+
+Depends: odin
+Homepage: http://od1n.sourceforge.net/
+License: GPL
+Pkg-Description: simulate and run magnetic resonance sequences
+ C++ software framework to develop, simulate and run magnetic resonance
+ sequences.
+ Contemporary magnetic resonance imaging techniques are available, for
+ example sequence modules for echo-planar imaging and spiral-imaging,
+ parallel imaging with GRAPPA reconstruction, two-dimensional pulses
+ and field-map-based distortion corrections.
+

