[Cdd-commits] r493 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Tue Nov 13 18:37:08 2007
New Revision: 493

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Added meme as prospective package


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Tue Nov 13 18:37:08 2007
@@ -65,3 +65,20 @@
 Pkg-Description: structural protein alignment
  TM-align performs a structural alignment of protein sequences. It is
  said to be 10 times faster than DALI and no worse in accuracy.
+
+Depends: meme
+Homepage: http://meme.nbcr.net/meme/
+License: non-free for commercial purpose (http://meme.nbcr.net/meme/COPYRIGHT.html)
+Pkg-Description: motif discovery and search
+  MEME is a tool for discovering motifs in a group of related DNA or protein
+  sequences.  A motif is a sequence pattern that occurs repeatedly in a group
+  of related protein or DNA sequences. MEME represents motifs as position-dependent
+  letter-probability matrices which describe the probability of each possible
+  letter at each position in the pattern. Individual MEME motifs do not contain
+  gaps. Patterns with variable-length gaps are split by MEME into two or more
+  separate motifs.
+  .
+  MEME takes as input a group of DNA or protein sequences (the training set)
+  and outputs as many motifs as requested. MEME uses statistical modeling
+  techniques to automatically choose the best width, number of occurrences,
+  and description for each motif.