[Cdd-commits] r478 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Fri Oct 19 10:47:44 2007
New Revision: 478

Modified:
   projects/med/trunk/debian-med/tasks/bio
   projects/med/trunk/debian-med/tasks/imaging
Log:
Added prospective projects


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Fri Oct 19 10:47:44 2007
@@ -34,3 +34,25 @@
 
 Suggests:    bugsx 
 Why:         Other packages (Non-free, thus only suggested).
+
+Depends: dialign-t
+Homepage: http://dialign-t.gobics.de/
+License: LGPL
+WNPP: 445983
+Pkg-Description: Segment-based multiple sequence alignment
+ DIALIGN-T is a command line tool to perform multiple alignment of protein or
+ DNA sequences. It is a complete reimplementation of the segment-base approach
+ including several new improvements and heuristics that significantly enhance
+ the quality of the output alignments compared to DIALIGN 2.2. For pairwise
+ alignment, DIALIGN-T uses a fragment-chaining algorithm that favours chains of
+ low-scoring local alignments over isolated high-scoring fragments. For
+ multiple alignment, DIALIGN-T uses an improved greedy procedure that is less
+ sensitive to spurious local sequence similarities.  DIALIGN-T has been
+ published in Amarendran R. Subramanian, Jan Weyer-Menkhoff, Michael Kaufmann,
+ Burkhard Morgenstern: DIALIGN-T: An improved algorithm for segment-based
+ multiple sequence alignment. BMC Bioinformatics 2005, 6:66.
+ .
+ DIALIGN-T is needed by dm_coffee, a special mode of t_coffee prepared
+ especially for Debian, in which non-free alignment software was replaced by
+ free alternatives.
+

Modified: projects/med/trunk/debian-med/tasks/imaging
==============================================================================
--- projects/med/trunk/debian-med/tasks/imaging	(original)
+++ projects/med/trunk/debian-med/tasks/imaging	Fri Oct 19 10:47:44 2007
@@ -10,3 +10,20 @@
 Suggests: imagemagick, paul
 
 Depends: libfslio0, libniftiio0, nifti-bin, dicomnifti
+
+Depends: bioimagesuite
+Homepage: http://www.bioimagesuite.org/
+License: GPL
+Pkg-Description: integrated image analysis software suite
+ BioImage Suite has extensive capabilities for both neuro/cardiac
+ and abdominal image analysis and state of the art visualization.
+ Many packages are available that are highly extensible, and provide
+ functionality for image visualization and registration, surface
+ editing, cardiac 4D multi-slice editing, diffusion tensor image
+ processing, mouse segmentation and registration, and much more. It
+ can be intergrated with other biomedical image processing software,
+ such as FSL and SPM. This site provides information, downloads,
+ documentation, and other resources for users of the software.
+ .
+ BioImage Suite was developed at Yale University and has been
+ extensively used at different labs at Yale since 2004.