[Cdd-commits] r687 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Tue Apr  8 15:09:54 2008
New Revision: 687

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Added tracetuner as prospective package


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Tue Apr  8 15:09:54 2008
@@ -889,3 +889,26 @@
 Pkg-Description: draw phylogenetic trees
  PhpPhylotree is a web application that is able to draw phylogenetic trees.
  It produces an SVG (Scalable Vector Graphic) file from phylip/newick tree files.
+
+Depends: tracetuner
+Homepage: http://www.jcvi.org/cms/research/software/tracetuner/overview
+License: GPL
+Pkg-Description: DNA sequencing and trace processing
+ TraceTuner is a DNA sequencing quality value, base calling and trace
+ processing software application originally developed by Paracel,
+ Inc. While providing a flexible interface and capability to adopt the
+ “pure” base calls produced by Phred, KB or any other “original”
+ caller, it offers competitive features not currently available in
+ other tools, such as customized calibration of quality values,
+ advanced heterozygote and mixed base calling and deconvolving the
+ “mixed” electropherograms resulting from the presence of indels into
+ a couple of “pure” electropherograms. Previous versions of TraceTuner
+ were used by Celera Genomics to process over 27 million reads from
+ both Drosophila and human genome projects and by Applied Biosystems,
+ as a component of its SNP detection and genotyping software product
+ SeqScape. TraceTuner implements an advanced peak processing
+ technology for resolving overlapping peaks of the same dye color into
+ individual, or “intrinsic” peaks. This technology was protected by US
+ Patent #6,681,186. Currently, TraceTuner is an open source software,
+ which has been used by J. Craig Venter Institute’s DNA Sequencing and
+ Resequencing pipelines.