[Cdd-commits] r693 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Wed Apr  9 15:05:41 2008
New Revision: 693

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Added exalt


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Wed Apr  9 15:05:41 2008
@@ -952,6 +952,7 @@
  approximate alignment scores efficiently.  More detailed information
  on the architecture of this system will be made available soon.
  Slides from a talk at Computational Genomics 2004 are now available.
+Note: Computational Gene Finding (http://www.cbcb.umd.edu/software/)
 
 Depends: rose
 Homepage: http://www.cbcb.umd.edu/software/rose/Rose.html
@@ -970,6 +971,7 @@
  by default) on either side of that region. When a predicted gene
  overlaps an alignment we use the gene prediction to extend the
  boundaries of the output region.
+Note: Computational Gene Finding (http://www.cbcb.umd.edu/software/)
 
 Depends: glimmerhmm
 Homepage: http://www.cbcb.umd.edu/software/glimmerhmm/
@@ -984,6 +986,7 @@
  structure includes introns of each phase, intergenic regions, and
  four types of exons (initial, internal, final, and single). A basic
  user manual can be consulted here.
+Note: Computational Gene Finding (http://www.cbcb.umd.edu/software/)
 
 Depends: genezilla
 Homepage: http://www.genezilla.org/
@@ -1010,3 +1013,18 @@
  at The Institute for Genomic Research over a 3-year period under NIH
  grants R01-LM06845 and R01-LM007938, and which served as the basis
  for the comparative gene finder TWAIN.
+Note: Computational Gene Finding (http://www.cbcb.umd.edu/software/)
+
+Depends: exalt
+Homepage: http://www.cbcb.umd.edu/software/exalt/
+License: Artistic
+Pkg-Description: phylogenetic generalized hidden Markov model for predicting alternatively spliced exons
+ ExAlt is a software program designed to predict alternatively spliced
+ overlapping exons in genomic sequence. The program works in several
+ ways depending on the available input. ExAlt can use information of
+ existing gene structure as well as sequence conservation to improve
+ the precision of it's predictions. ExAlt can also make predictions
+ when only a single genomic sequence is available. ExAlt has been
+ extensively tested on Drosophila melanogaster, but can be adapted to
+ run on other species.
+Note: Computational Gene Finding (http://www.cbcb.umd.edu/software/)