[Cdd-commits] r695 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Wed Apr  9 21:05:49 2008
New Revision: 695

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Added genesplicer


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Wed Apr  9 21:05:49 2008
@@ -1055,3 +1055,21 @@
  viewable as custom tracks in the UCSC Human Genome
  Browser. Predictions available for the Human genome and viewable as
  custom tracks in the UCSC Human Genome Browser
+Note: Computational Gene Finding (http://www.cbcb.umd.edu/software/)
+
+Depends: genesplicer
+Homepage: http://www.cbcb.umd.edu/software/GeneSplicer/
+License: Artistic
+Pkg-Description: computational method for splice site prediction
+ A fast, flexible system for detecting splice sites in the genomic DNA
+ of various eukaryotes. The system has been trained and tested
+ successfully on Plasmodium falciparum (malaria), Arabidopsis
+ thaliana, human, Drosophila, and rice . Training data sets for human
+ and Arabidopsis thaliana are included. Use the GeneSplicer Web
+ Interface to run GeneSplicer directly, or see below for instructions
+ on downloading the complete system including source code.
+ .
+ There is no independent program to train GeneSplicer, but there is a
+ way to obtain the necessary files by using the training procedure of
+ GlimmerHMM.
+Note: Computational Gene Finding (http://www.cbcb.umd.edu/software/)