[Cdd-commits] r702 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Fri Apr 11 09:10:57 2008
New Revision: 702

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
catissue


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Fri Apr 11 09:10:57 2008
@@ -1150,6 +1150,7 @@
  3.5-fold in total application time when aligning reads from recent
  sequencing projects using Solexa/Illumina, 454, and Sanger sequencing
  technologies.
+Note: Genome assembly and large-scale genome alignment (http://www.cbcb.umd.edu/software/)
 
 Depends: amos-assembler
 Homepage: http://amos.sourceforge.net/
@@ -1166,6 +1167,7 @@
  and improve in hopes of eventually becoming a widely accepted and
  deployed assembly infrastructure. In this sense, AMOS is both a
  design philosophy and a software system.
+Note: Genome assembly and large-scale genome alignment (http://www.cbcb.umd.edu/software/)
 
 Depends: amoscmp
 Homepage: http://amos.sourceforge.net/docs/pipeline/AMOScmp.html
@@ -1194,3 +1196,23 @@
  AMOScmp is part of the AMOS package (see
  http://amos.sourceforge.net/)- a collaborative effort to develop a
  modular open-source framework for assembly development.
+Note: Genome assembly and large-scale genome alignment (http://www.cbcb.umd.edu/software/)
+
+Ignore: catissuecore
+Homepage: https://cabig.nci.nih.gov/tools/catissuecore
+License: to be clarified, NCICB Open Source Project Site
+Pkg-Description: biospecimen inventory, tracking, and basic annotation
+ caTissue Core is caBIG's tissue bank repository tool for biospecimen
+ inventory, tracking, and basic annotation. Version 1.2.1 of caTissue
+ permits users to track the collection, storage, quality assurance,
+ and distribution of specimens as well as the derivation and
+ aliquotting of new specimens from an existing ones (e.g. for DNA
+ analysis). It also allows users to find and request specimens that
+ may then be used in molecular, correlative studies.
+ .
+ Intended Audiences: Translational Researchers, Pathologists, Biobank
+ Managers
+Note: A lot of stuff can be found at National Cancer Institute's
+ Center for Bioinformatics (NCICB) Open Source Project Site
+ http://gforge.nci.nih.gov/ which has to be evaluated and put into the
+ right category of our tasks files