[Cdd-commits] r709 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Wed Apr 16 13:21:38 2008
New Revision: 709

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Added bambus


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Wed Apr 16 13:21:38 2008
@@ -1302,3 +1302,17 @@
  MINiML) from or into databases like GUS (the Genomics Unified Schema,
  www.gusdb.org). 
 
+Depends: bambus
+Homepage: http://amos.sourceforge.net/docs/bambus/
+License: Artistic
+Pkg-Description: hierarchical approach to building contig scaffolds
+ BAMBUS is the first publicly available scaffolding program. It orders
+ and orients contigs into scaffolds based on various types of linking
+ information. Additionally, BAMBUS allows the users to build scaffolds
+ in a hierarchical fashion by prioritizing the order in which links
+ are used. For more information please check out the online
+ documentation.
+ .
+ Note that currently Bambus is undergoing a transition in order to be
+ integrated with the AMOS package (see http://amos.sourceforge.net/)
+Note: Genome assembly and large-scale genome alignment (http://www.cbcb.umd.edu/software/)