[Cdd-commits] r718 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Tue Apr 22 13:18:38 2008
New Revision: 718

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Added figaro


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Tue Apr 22 13:18:38 2008
@@ -1348,6 +1348,7 @@
  Publication: Schatz, M.C., Phillippy, A.M., Shneiderman, B.,
  Salzberg, S.L. (2007) Hawkeye: a visual analytics tool for genome
  assemblies. Genome Biology 8:R34.
+Note: Genome assembly and large-scale genome alignment (http://www.cbcb.umd.edu/software/)
 
 Depends: murasaki
 Homepage: http://murasaki.dna.bio.keio.ac.jp/
@@ -1382,3 +1383,17 @@
 Pkg-Description: for assembling and searching pyrophosphate sequence data
  Simple tools for assembling and searching high-density picolitre
  pyrophosphate sequence data.
+
+Depends: figaro
+Homepage: http://amos.sourceforge.net/Figaro/Figaro.html
+License: 
+Pkg-Description: novel vector trimming software
+ Figaro is a software tool for identifying and removing the vector
+ from raw DNA sequence data without prior knowledge of the vector
+ sequence.  By statistically modeling short oligonucleotide
+ frequencies within a set of reads, Figaro is able to determine which
+ DNA words are most likely associated with vector sequence.  For a
+ description of Figaro's algorithms please see our paper.  Figaro is
+ part of the AMOS suite.
+Note: Genome assembly and large-scale genome alignment (http://www.cbcb.umd.edu/software/)
+