[Cdd-commits] r1012 - in projects/med/trunk/debian-med: . tasks

[CDD Subversion Commit]

Author: moeller
Date: Sat Aug  2 22:41:25 2008
New Revision: 1012

Added:
   projects/med/trunk/debian-med/README
Modified:
   projects/med/trunk/debian-med/tasks/bio
   projects/med/trunk/debian-med/tasks/bio-dev
Log:
Moving r-other-bio3d from bio-dev to bio
Adding r-other-genabel


Added: projects/med/trunk/debian-med/README
==============================================================================
--- (empty file)
+++ projects/med/trunk/debian-med/README	Sat Aug  2 22:41:25 2008
@@ -0,0 +1,10 @@
+This folder collects information on packages that have been built for
+the Debian-Med Custom Debian Distribution or that are currently prepared
+to be uploaded.
+
+If you want to add package descriptions, then edit the
+respective file in tasks/  and make sure to have read through
+http://cdd.alioth.debian.org/cdd/ch-sentinel.en.html.
+
+For more advanced issues please refer to the cdd paper in full and
+consider to talk back to Andreas Tille <tille at debian.org>.

Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Sat Aug  2 22:41:25 2008
@@ -1938,3 +1938,34 @@
  visualization of protein families.  Schuster-Böckler B, Schultz J,
  Rahmann S BMC Bioinformatics. 2004;5;7. PMID: 14736340 DOI:
  10.1186/1471-2105-5-7
+
+Depends: r-other-bio3d
+Homepage: http://mccammon.ucsd.edu/~bgrant/bio3d
+Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-other-bio3d
+WNPP: 492499
+Responsible: Steffen Moeller <moeller at debian.org>
+Pkg-Description: GNU R package for biological structure analysis
+ The bio3d package contains utilities to process, organize and explore
+ protein structure, sequence and dynamics data.  Features include the
+ ability to read and write structure, sequence and dynamic trajectory
+ data, perform atom summaries, atom selection, re-orientation,
+ superposition, rigid core identification, clustering, torsion analysis,
+ distance matrix analysis, structure and sequence conservation analysis,
+ and principal component analysis (PCA).  In addition, various utility
+ functions are provided to enable the statistical and graphical power of
+ the R environment to work with biological sequence and structural data.
+
+Depends: r-other-genabel
+Homepage: http://mga.bionet.nsc.ru/nlru/GenABEL
+Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-genabel
+WNPP: 492044
+Responsible: Steffen Moeller <moeller at debian.org>
+Description: GNU R package for genome-wide SNP association analysis
+ The package offers the R library GenABEL for the hunt of genetic contributions
+ to a disease (or any other pheonypical trait) by so called genome-wide
+ association analysis. Additional input commonly comes from DNA mircoarray
+ experiments, performed on every individual, that determine differences
+ (polymorphisms) in the population. GenABEL finds associations between
+ quantitative or binary traits and single-nucleiotide polymorphisms
+ (SNPs). 
+

Modified: projects/med/trunk/debian-med/tasks/bio-dev
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-dev	(original)
+++ projects/med/trunk/debian-med/tasks/bio-dev	Sat Aug  2 22:41:25 2008
@@ -22,8 +22,6 @@
 
 Depends: libajax5-dev, libnucleus5-dev
 
-Depends: r-other-bio3d
-
 Depends: bioconductor
 Homepage: http://www.bioconductor.org/
 Responsible: Debian CRAN/BioConductor/Omegahat packaging team <pkg-bioc-devel at lists.alioth.debian.org>