[Cdd-commits] r551 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Mon Feb 18 20:56:09 2008
New Revision: 551

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Glam het Debian mirror so no description in tasks file is needed


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Mon Feb 18 20:56:09 2008
@@ -45,28 +45,6 @@
 Depends: dialign-t
 
 Depends: glam2
-Homepage: http://bioinformatics.org.au/glam2/
-Responsible: Steffen Moeller <steffen_moeller at gmx.de>
-License: Public Domain
-WNPP: 45237
-Pkg-Description: gapped protein motifs from unaligned sequences
- GLAM2 is a software package for finding motifs in sequences, typically
- amino-acid or nucleotide sequences. A motif is a re-occurring sequence
- pattern: typical examples are the TATA box and the CAAX prenylation motif. The
- main innovation of GLAM2 is that it allows insertions and deletions in motifs.
- .
- The package includes these programs: glam2 â~@~T for discovering motifs shared by
- a set of sequences; glam2scan â~@~T for finding matches, in a sequence database,
- to a motif discovered by glam2; glam2format â~@~T for converting glam2 motifs to
- standard alignment formats; glam2mask â~@~T for masking glam2 motifs out of
- sequences, so that weaker motifs can be found; glam2-purge â~@~T for removing
- highly similar members of a set of sequences.
- .
- In this package, the fast Fourier algorithm (FFT) was enabled for glam2.
- .
- If you use GLAM2, please cite: MC Frith, NFW Saunders, B Kobe, TL Bailey
- (2008) Discovering sequence motifs with arbitrary insertions and deletions,
- PLoS Computational Biology (in press).
 
 Depends: tm-align
 Homepage: http://zhang.bioinformatics.ku.edu/TM-align/