[Cdd-commits] r563 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Thu Feb 21 16:14:42 2008
New Revision: 563

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Added some prospective packages


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Thu Feb 21 16:14:42 2008
@@ -319,7 +319,7 @@
 Responsible: Andreas Tille <tille at debian.org>
 License: GPL
 WNPP: 
-Pkg-Description: 
+Pkg-Description: organize the data associated with a genome
  Developments in genome-wide approaches to biological research have
  yielded greatly increased quantities of data, necessitating the cooperation
  of communities of scientists focusing on shared sets of data. ASAP
@@ -341,3 +341,38 @@
  other installations of ASAP could be implemented. As future ASAP
  installations come to pass, ASAP will be further extended to be
  inter-operable between sites.
+
+Depends: emboss-kaptain
+Homepage: http://userpage.fu-berlin.de/~sgmd/download.html
+Responsible: Charles Plessy <charles-debian-nospam at plessy.org>
+License: GPL-2+
+WNPP: 466682
+Pkg-Description: graphical interface to EMBOSS using Kaptain
+ EMBOSS.kaptn is a graphical user interface (GUI) for more than 200
+ programms of the EMBOSS sequence analysis package. It uses Kaptain, a
+ universal front-end for command line applications. EMBOSS is a
+ collection of high-quality free Open Source software for sequence
+ analysis.  With EMBOSS.kaptn it integrates nicely into X window based
+ desktops like KDE.
+
+Depends: agdbnet
+Homepage: http://pubmlst.org/software/database/agdbnet/
+Responsible: Andreas Tille <tille at debian.org>
+License: GPL
+WNPP:
+Pkg-Description: antigen sequence database software for web-based bacterial typing
+ AgdbNet is antigen sequence database software for web-based bacterial
+ typing. The software facilitates simultaneous BLAST querying of multiple
+ loci using either nucleotide or peptide sequences. It's written in Perl
+ and runs on Linux/UNIX systems.
+ .
+ Databases are described by XML files and can have any number of loci, which
+ may be defined by nucleotide and/or peptide sequences. The databases can
+ optionally have integral isolate tables so that information about representative
+ isolates can be retrieved or they may be configured to query external isolate
+ databases, such as those hosted on PubMLST.org.
+ .
+ The software is used on a number of public bacterial typing databases:
+  * Neisseria PorA variable regions | PorB | FetA
+  * Campylobacter flaA
+  * Streptococcus equi seM