[Cdd-commits] r569 - in projects/med/trunk/debian-med: debian tasks
CDD Subversion Commit
noreply at alioth.debian.org
Thu Feb 28 16:47:03 UTC 2008
Author: tille
Date: Thu Feb 28 16:47:03 2008
New Revision: 569
Added:
projects/med/trunk/debian-med/tasks/epi
Modified:
projects/med/trunk/debian-med/debian/changelog
projects/med/trunk/debian-med/tasks/bio
projects/med/trunk/debian-med/tasks/bio-dev
projects/med/trunk/debian-med/tasks/cms
projects/med/trunk/debian-med/tasks/imaging
projects/med/trunk/debian-med/tasks/imaging-dev
projects/med/trunk/debian-med/tasks/pharmacy
projects/med/trunk/debian-med/tasks/physics
projects/med/trunk/debian-med/tasks/practice
projects/med/trunk/debian-med/tasks/tools
Log:
Cleaning up tasks descriptions and new package med-epi
Modified: projects/med/trunk/debian-med/debian/changelog
==============================================================================
--- projects/med/trunk/debian-med/debian/changelog (original)
+++ projects/med/trunk/debian-med/debian/changelog Thu Feb 28 16:47:03 2008
@@ -7,6 +7,13 @@
* tasks/imaging
- Removed paul
- pngquant: Recommends -> Suggests
+ * tasks/epi: New meta package: med-epi for epidemiology
+ research
+ * tasks/tools:
+ - Moved NetEpi prospective package to epi where it really
+ belongs to
+ * Removed remark about recommended and suggested packages
+ from description or meta packages
-- Andreas Tille <tille at debian.org> Wed, 20 Feb 2008 13:31:25 +0100
Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Thu Feb 28 16:47:03 2008
@@ -1,9 +1,7 @@
Task: Biology
Description: Debian-Med micro-biology packages
This meta package will install Debian packages related to molecular biology,
- structural biology and bioinformatics for use in life sciences. Please note
- that there also recommended and only suggested packages which are not
- installed in any circumstance but only if the user asks for installing these.
+ structural biology and bioinformatics for use in life sciences.
Depends: fastdnaml, njplot, tree-puzzle | tree-ppuzzle, treeviewx
Why: Phylogenetic analysis.
Modified: projects/med/trunk/debian-med/tasks/bio-dev
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-dev (original)
+++ projects/med/trunk/debian-med/tasks/bio-dev Thu Feb 28 16:47:03 2008
@@ -1,9 +1,7 @@
Task: Biology Development
Description: Debian-Med packages for development of micro-biology applications
This meta package will install Debian packages which might be helpful
- for development of applications for micro-biological research. Please note
- that there also recommended and only suggested packages which are not
- installed in any circumstance but only if the user asks for installing these.
+ for development of applications for micro-biological research.
Depends: bioperl, libncbi6-dev, mcl
Suggests: biomode, r-base-core
Modified: projects/med/trunk/debian-med/tasks/cms
==============================================================================
--- projects/med/trunk/debian-med/tasks/cms (original)
+++ projects/med/trunk/debian-med/tasks/cms Thu Feb 28 16:47:03 2008
@@ -1,9 +1,6 @@
Task: Content Management
Description: Debian-Med content management systems
This meta package will install packages which are useful to build a
- content management system for medical care. Please note
- that there also recommended and only suggested packages which are not
- installed in any circumstance but only if the user asks for installing
- these.
+ content management system for medical care.
Depends: zope-zms
Added: projects/med/trunk/debian-med/tasks/epi
==============================================================================
--- (empty file)
+++ projects/med/trunk/debian-med/tasks/epi Thu Feb 28 16:47:03 2008
@@ -0,0 +1,66 @@
+Task: Epidemiology
+Description: Debian-Med epidemiology related packages
+ This meta package will install tools that are useful in epidemiological
+ research.
+
+Depends: epigrass
+
+Depends: netepi-analysis
+Homepage: http://www.netepi.org/
+Responsible: Andreas Tille <tille at debian.org>
+License: free
+WNPP:
+Pkg-Description: network-enabled tools for epidemiology and public health practice
+ NetEpi, which is short for "Network-enabled Epidemiology", is a collaborative
+ project to create a suite of free, open source software tools for epidemiology
+ and public health practice. Anyone with an interest in population health
+ epidemiology or public health informatics is encouraged to examine the prototype
+ tools and to consider contributing to their further development. Contributions
+ which involve formal and/or informal testing of the tools in a wide range of
+ circumstances and environments are particularly welcome, as is assistance with
+ design, programming and documentation tasks.
+ .
+ This is a tool for conducting epidemiological analysis of data sets, both large
+ and small, either through a Web browser interface, or via a programmatic
+ interface. In many respects it is similar to the analysis facilities included
+ in the Epi Info suite, except that NetEpi Analysis is designed to be installed
+ on servers and accessed remotely via Web browsers, although it can also be
+ installed on individual desktop or laptop computers.
+ .
+ The software was developed by New South Wales Department of Health.
+
+Depends: netepi-casemgr
+Homepage: http://www.netepi.org/
+Responsible: Andreas Tille <tille at debian.org>
+License: free
+WNPP:
+Pkg-Description: network-enabled tools for epidemiology and public health practice
+ NetEpi, which is short for "Network-enabled Epidemiology", is a collaborative
+ project to create a suite of free, open source software tools for epidemiology
+ and public health practice. Anyone with an interest in population health
+ epidemiology or public health informatics is encouraged to examine the prototype
+ tools and to consider contributing to their further development. Contributions
+ which involve formal and/or informal testing of the tools in a wide range of
+ circumstances and environments are particularly welcome, as is assistance with
+ design, programming and documentation tasks.
+ .
+ NetEpi Case Manager is a tool for securely collecting structured
+ information about cases and contacts of communicable (and other)
+ diseases through Web browsers and the Internet. New data collection
+ forms can be designed and deployed quickly by epidemiologists, using a
+ "point-and-click" interface, without the need for knowledge of or
+ training in any programming language. Data can then be collected from
+ users of the system, who can be located anywhere in the world, into a
+ centralised database. All that is needed by users of the system is a
+ relatively recent Web browser and an Internet connection ("NetEpi"
+ is short for "Network-enabled Epidemiology"). In many respects,
+ NetEpi Case Manager is like a Web-enabled version of the data entry
+ facilities in the very popular Epi Info suite of programmes published by
+ the US Centers for Disease Control and Prevention, and in the Danish
+ EpiData project, which is available for several languages. The software
+ was developed by the Centre for Epidemiology and Research of the New
+ South Wales Department of Health, with contributions from Population
+ Health Division of the Australian Government Department of Health and
+ Ageing.
+ .
+ The software was developed by New South Wales Department of Health.
Modified: projects/med/trunk/debian-med/tasks/imaging
==============================================================================
--- projects/med/trunk/debian-med/tasks/imaging (original)
+++ projects/med/trunk/debian-med/tasks/imaging Thu Feb 28 16:47:03 2008
@@ -1,9 +1,7 @@
Task: Imaging
Description: Debian-Med imaging packages
This meta package will install Debian packages which might be useful in medical
- image processing. Please note
- that there also recommended and only suggested packages which are not
- installed in any circumstance but only if the user asks for installing these.
+ image processing.
Depends: amide, ctsim, ctn, dicomnifti, imagej, minc-tools, medcon, python-nifti, xmedcon, dcmtk
@@ -150,3 +148,36 @@
* reuse and easily compare a variety of available methods
SOFA version 1.0 beta 1 was released during the Medicine Meets Virtual
Reality 2007 conference in Long Beach, California.
+
+Depends: mesa-test-tools
+Homepage: http://ihedoc.wustl.edu/mesasoftware/
+License: free
+Pkg-Description: IHE Test Software for Radiology
+ The MESA software release which is available at
+ http://ihedoc.wustl.edu/mesasoftware/10.15.0/dist/ provides several
+ tools that might cover a wide range of applications for
+ Integrating the Healthcare Enterprise (IHE) testing.
+ .
+ Another important element of the IHE testing process is the set of
+ software tools HIMSS and RSNA have commissioned. Developed by the
+ Electronic Radiology Laboratory at the Mallinckrodt Institute of
+ Radiology, Washington University of St. Louis, the MESA tools are
+ designed for use by participating companies in implementing IHE
+ capabilities in their systems and preparing for the Connectathon. Their
+ purpose is to provide communication partners, test data and test plans
+ to allow organizations to provide a baseline level of testing as they
+ implement the IHE Technical Framework. These tools are made available to
+ participants during the period of an IHE demonstration year and are then
+ released into the public domain at the end of that cycle. The latest
+ version of the MESA Test Tools available in the public domain can be
+ found here.
+ .
+ This kind of software is definitively valuable for information systems
+ vendors and imaging systems vendors.
+ .
+ Because the CTN Debian package is based on an upstream dead project
+ these tools should have a high priority for packaging because the
+ CTN homepage http://erl.wustl.edu/research/dicom/ctn.html says:
+ "The CTN software is also embedded within the MESA tools. The version
+ of CTN software in those tools does not have a separate release number
+ but is more current than version 3.0.6."
Modified: projects/med/trunk/debian-med/tasks/imaging-dev
==============================================================================
--- projects/med/trunk/debian-med/tasks/imaging-dev (original)
+++ projects/med/trunk/debian-med/tasks/imaging-dev Thu Feb 28 16:47:03 2008
@@ -1,9 +1,7 @@
Task: Imaging Development
Description: Debian-Med packages for medical image development
This meta package will install Debian packages which might be useful
- for developing applications for medical image processing. Please note
- that there also recommended and only suggested packages which are not
- installed in any circumstance but only if the user asks for installing these.
+ for developing applications for medical image processing.
Depends: ctn-dev, cimg-dev, libminc0-dev | libminc-dev, libmdc2-dev
Modified: projects/med/trunk/debian-med/tasks/pharmacy
==============================================================================
--- projects/med/trunk/debian-med/tasks/pharmacy (original)
+++ projects/med/trunk/debian-med/tasks/pharmacy Thu Feb 28 16:47:03 2008
@@ -2,8 +2,6 @@
Description: Debian-Med packages for pharmaceutical research
This meta package contains dependencies for a
collection of software and documentation which is useful for
- pharmaceutical research. Please note that there also recommended
- and only suggested packages which are not installed in any circumstance
- but only if the user asks for installing these.
+ pharmaceutical research.
Depends: chemtool
Modified: projects/med/trunk/debian-med/tasks/physics
==============================================================================
--- projects/med/trunk/debian-med/tasks/physics (original)
+++ projects/med/trunk/debian-med/tasks/physics Thu Feb 28 16:47:03 2008
@@ -3,10 +3,7 @@
This meta package contains dependencies for a
collection of software and documentation which is useful for
medical physicists in radiation oncology, diagnostics imaging
- and related fields. Please note
- that there also recommended and only suggested packages which are not
- installed in any circumstance but only if the user asks for installing
- these.
+ and related fields.
Depends: paw++
Why: Just depend from the user friendly version because it is easier to
Modified: projects/med/trunk/debian-med/tasks/practice
==============================================================================
--- projects/med/trunk/debian-med/tasks/practice (original)
+++ projects/med/trunk/debian-med/tasks/practice Thu Feb 28 16:47:03 2008
@@ -1,8 +1,7 @@
Task: Practice
Description: Debian-Med packages for practice management
- This meta package contains dependencies for a
- collection of software which might be helpful for
- practitioners to manage their practice.
+ This meta package contains dependencies for a collection of software
+ which might be helpful for practitioners to manage their practice.
Depends: gnumed-client
Modified: projects/med/trunk/debian-med/tasks/tools
==============================================================================
--- projects/med/trunk/debian-med/tasks/tools (original)
+++ projects/med/trunk/debian-med/tasks/tools Thu Feb 28 16:47:03 2008
@@ -1,72 +1,9 @@
Task: Tools
Description: Debian-Med several tools
This meta package will install tools for several purposes in health care.
- Currently it contains some simple programs for Personal Health. Please note
- that there are also suggested packages which are not installed in any
- circumstance but only if the user asks for installing these.
+ Currently it contains some simple programs for Personal Health.
Depends: mencal, cycle
Suggests: cl-pubmed
Why: Strong dependency would cost installing a large amount of Common Lisp tools which in most cases is not worth the effort
-
-Why: Netepi should go into med-research, but this section has not yet an existing package
-Depends: netepi-analysis
-Homepage: http://www.netepi.org/
-Responsible: Andreas Tille <tille at debian.org>
-License: free
-WNPP:
-Pkg-Description: network-enabled tools for epidemiology and public health practice
- NetEpi, which is short for "Network-enabled Epidemiology", is a collaborative
- project to create a suite of free, open source software tools for epidemiology
- and public health practice. Anyone with an interest in population health
- epidemiology or public health informatics is encouraged to examine the prototype
- tools and to consider contributing to their further development. Contributions
- which involve formal and/or informal testing of the tools in a wide range of
- circumstances and environments are particularly welcome, as is assistance with
- design, programming and documentation tasks.
- .
- This is a tool for conducting epidemiological analysis of data sets, both large
- and small, either through a Web browser interface, or via a programmatic
- interface. In many respects it is similar to the analysis facilities included
- in the Epi Info suite, except that NetEpi Analysis is designed to be installed
- on servers and accessed remotely via Web browsers, although it can also be
- installed on individual desktop or laptop computers.
- .
- The software was developed by New South Wales Department of Health.
-
-Depends: netepi-casemgr
-Homepage: http://www.netepi.org/
-Responsible: Andreas Tille <tille at debian.org>
-License: free
-WNPP:
-Pkg-Description: network-enabled tools for epidemiology and public health practice
- NetEpi, which is short for "Network-enabled Epidemiology", is a collaborative
- project to create a suite of free, open source software tools for epidemiology
- and public health practice. Anyone with an interest in population health
- epidemiology or public health informatics is encouraged to examine the prototype
- tools and to consider contributing to their further development. Contributions
- which involve formal and/or informal testing of the tools in a wide range of
- circumstances and environments are particularly welcome, as is assistance with
- design, programming and documentation tasks.
- .
- NetEpi Case Manager is a tool for securely collecting structured
- information about cases and contacts of communicable (and other)
- diseases through Web browsers and the Internet. New data collection
- forms can be designed and deployed quickly by epidemiologists, using a
- "point-and-click" interface, without the need for knowledge of or
- training in any programming language. Data can then be collected from
- users of the system, who can be located anywhere in the world, into a
- centralised database. All that is needed by users of the system is a
- relatively recent Web browser and an Internet connection ("NetEpi"
- is short for "Network-enabled Epidemiology"). In many respects,
- NetEpi Case Manager is like a Web-enabled version of the data entry
- facilities in the very popular Epi Info suite of programmes published by
- the US Centers for Disease Control and Prevention, and in the Danish
- EpiData project, which is available for several languages. The software
- was developed by the Centre for Epidemiology and Research of the New
- South Wales Department of Health, with contributions from Population
- Health Division of the Australian Government Department of Health and
- Ageing.
- .
- The software was developed by New South Wales Department of Health.
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