[Cdd-commits] r520 - in projects/med/trunk/debian-med: debian tasks

[CDD Subversion Commit]

Author: tille
Date: Mon Jan 21 17:45:17 2008
New Revision: 520

Modified:
   projects/med/trunk/debian-med/debian/changelog
   projects/med/trunk/debian-med/tasks/bio
   projects/med/trunk/debian-med/tasks/practice
Log:
Added some prospective packages


Modified: projects/med/trunk/debian-med/debian/changelog
==============================================================================
--- projects/med/trunk/debian-med/debian/changelog	(original)
+++ projects/med/trunk/debian-med/debian/changelog	Mon Jan 21 17:45:17 2008
@@ -11,6 +11,7 @@
   * tasks/bio-dev: Added BioClipse as prospective package
   * tasks/bio: dialign-t is now official package - removed
     Pkg-Description
+  * tasks/practice: Added Mirth as prospective package
 
  -- Andreas Tille <tille at debian.org>  Sun, 09 Dec 2007 11:43:52 +0100
 

Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Mon Jan 21 17:45:17 2008
@@ -259,3 +259,24 @@
  Citation: Population dynamics of HIV-1 inferred from gene sequences
  Grassly NC, Harvey PH & Holmes EC (1999) Genetics 151, 427-438.
 
+Depends: infernal
+Homepage: http://infernal.janelia.org/
+Responsible: Steffen Moeller <moeller at debian.org>
+License: GPL
+WNPP: 441840
+Pkg-Description: RNA sequence comparison
+ Infernal ("INFERence of RNA ALignment") is for searching DNA sequence
+ databases for RNA structure and sequence similarities. It is an
+ implementation of a special case of profile stochastic context-free
+ grammars called covariance models (CMs). A CM is like a sequence
+ profile, but it scores a combination of sequence consensus and RNA
+ secondary structure consensus, so in many cases, it is more capable of
+ identifying RNA homologs that conserve their secondary structure more
+ than their primary sequence.
+ .
+ The tool is an integral component of the Rfam database.
+ .
+ Users of this package should cite:
+ "Query-Dependent Banding (QDB) for Faster RNA Similarity Searches."
+  E. P. Nawrocki, S. R. Eddy. PLoS Comput. Biol., 3:e56, 2007.
+

Modified: projects/med/trunk/debian-med/tasks/practice
==============================================================================
--- projects/med/trunk/debian-med/tasks/practice	(original)
+++ projects/med/trunk/debian-med/tasks/practice	Mon Jan 21 17:45:17 2008
@@ -8,3 +8,18 @@
 
 Recommends: libchipcard3c1, libchipcard3d0
 Why: Reading German "Gesundheitskarte"
+
+Depends: mirth
+Homepage: http://www.mirthproject.org/
+License: MPL 1.1
+Pkg-Description: HL7 integration engine
+ "Swiss army knife" HL7 integration engine. Specifically designed for
+ HL7 message integration, Mirth provides the necessary tools for developing,
+ deploying, and monitoring interfaces.
+ .
+ Filtering can be performed on incoming messages using the default message
+ filters that are included with Mirth, or your own custom filtering scripts.
+ Mirth's web interface makes it easy to write new scripts by proving a
+ template and editing field that allows you to validate your script code.
+ Mirth also supports filters written in Java if you require more complex
+ filtering options.