[Cdd-commits] r933 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Sun Jul  6 19:43:26 2008
New Revision: 933

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Fixed copy-n-pasto with mauve


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Sun Jul  6 19:43:26 2008
@@ -264,36 +264,6 @@
  "Query-Dependent Banding (QDB) for Faster RNA Similarity Searches."
   E. P. Nawrocki, S. R. Eddy. PLoS Comput. Biol., 3:e56, 2007.
 
-Depends: mauvealigner
-Homepage: http://asap.ahabs.wisc.edu/mauve/
-Responsible: Andreas Tille <tille at debian.org>
-License: GPL
-WNPP:
-Pkg-Description: multiple genome alignment
- Mauve is a system for efficiently constructing multiple genome alignments
- in the presence of large-scale evolutionary events such as rearrangement
- and inversion. Multiple genome alignment provides a basis for research
- into comparative genomics and the study of evolutionary dynamics.  Aligning
- whole genomes is a fundamentally different problem than aligning short
- sequences.
- .
- Mauve has been developed with the idea that a multiple genome aligner
- should require only modest computational resources. It employs algorithmic
- techniques that scale well in the amount of sequence being aligned. For
- example, a pair of Y. pestis genomes can be aligned in under a minute,
- while a group of 9 divergent Enterobacterial genomes can be aligned in
- a few hours.
- .
- Mauve computes and interactively visualizes genome sequence comparisons.
- Using FastA or GenBank sequence data, Mauve constructs multiple genome
- alignments that identify large-scale rearrangement, gene gain, gene loss,
- indels, and nucleotide substutition.
- .
- Mauve is developed at the University of Wisconsin.
- .
- Note: There are instructions for compiling Mauve from source available at
- http://asap.ahabs.wisc.edu/mauve/mauve-developer-guide/compiling-mauvealigner-from-source.html
-
 Depends: asap
 Homepage: http://asap.ahabs.wisc.edu/software/asap/
 Responsible: Andreas Tille <tille at debian.org>
@@ -675,6 +645,35 @@
  to determine genes and genetic pathways that are associated
  with diseases. This is an early stage in the quest for new drugs.
 
+Depends: mauve
+Homepage: http://asap.ahabs.wisc.edu/mauve/
+Responsible: Andreas Tille <tille at debian.org>
+License: GPL
+Pkg-Description: multiple genome alignment
+ Mauve is a system for efficiently constructing multiple genome alignments
+ in the presence of large-scale evolutionary events such as rearrangement
+ and inversion. Multiple genome alignment provides a basis for research
+ into comparative genomics and the study of evolutionary dynamics.  Aligning
+ whole genomes is a fundamentally different problem than aligning short
+ sequences.
+ .
+ Mauve has been developed with the idea that a multiple genome aligner
+ should require only modest computational resources. It employs algorithmic
+ techniques that scale well in the amount of sequence being aligned. For
+ example, a pair of Y. pestis genomes can be aligned in under a minute,
+ while a group of 9 divergent Enterobacterial genomes can be aligned in
+ a few hours.
+ .
+ Mauve computes and interactively visualizes genome sequence comparisons.
+ Using FastA or GenBank sequence data, Mauve constructs multiple genome
+ alignments that identify large-scale rearrangement, gene gain, gene loss,
+ indels, and nucleotide substutition.
+ .
+ Mauve is developed at the University of Wisconsin.
+ .
+ Note: There are instructions for compiling Mauve from source available at
+ http://asap.ahabs.wisc.edu/mauve/mauve-developer-guide/compiling-mauvealigner-from-source.html
+
 Depends: mauvealigner
 Homepage: http://asap.ahabs.wisc.edu/mauve/
 Responsible: Andreas Tille <tille at debian.org>