[Cdd-commits] r937 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Mon Jul  7 11:19:56 2008
New Revision: 937

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Added beast


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Mon Jul  7 11:19:56 2008
@@ -1578,3 +1578,18 @@
  context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s. Additional
  extensions to tRNAscan-SE detect unusual tRNA homologues such as selenocysteine
  tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.
+
+Depends: beast
+Homepage: http://beast.bio.ed.ac.uk/
+License: LGPL
+Pkg-Description: Bayesian MCMC analysis of molecular sequences
+ BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences.
+ It is entirely orientated towards rooted, time-measured phylogenies inferred using
+ strict or relaxed molecular clock models. It can be used as a method of
+ reconstructing phylogenies but is also a framework for testing evolutionary
+ hypotheses without conditioning on a single tree topology. BEAST uses MCMC to
+ average over tree space, so that each tree is weighted proportional to its
+ posterior probability. We include a simple to use user-interface program for
+ setting up standard analyses and a suit of programs for analysing the results.
+ .
+ The source is avialable at http://code.google.com/p/beast-mcmc/ .