[Cdd-commits] r946 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Tue Jul  8 12:38:42 2008
New Revision: 946

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Added srf


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Tue Jul  8 12:38:42 2008
@@ -1611,6 +1611,8 @@
 Depends: maq
 Homepage: http://maq.sourceforge.net/
 License: GPL
+WNPP: 489836
+Responsible: Charles Plessy <plessy at debian.org>
 Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/maq/trunk/?rev=0&sc=0
 Pkg-Description: Mapping and Assembly with Quality
  Maq builds mapping assemblies from short reads generated by the
@@ -1641,3 +1643,22 @@
   - Align capillary reads or 454 reads to the reference. (Maq cannot align
     reads longer than 63bp.)
 
+Depends: srf
+Homepage: http://srf.sourceforge.net/
+License: Apache License V2.0
+Responsible: Charles Plessy <plessy at debian.org>
+Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/srf/trunk/?rev=0&sc=0
+Pkg-Description: Sequence Read Format
+ SRF is a generic format for DNA sequence data. The primary motivation for
+ creating SRF has been to enable a single format capable of storing data
+ generated by any DNA sequencing technology. Hence, the format has sufficient
+ flexibility to store data from current and future DNA sequencing technologies
+ at minimal cost of implementation.
+ .
+ Benefits include a single input file format for all downstream applications
+ and a read lookup index enabling downstream formats to reference reads without
+ duplication of all of the read specific information.
+ .
+ This format has been developed as an open collaborative effort between many
+ groups and individuals.
+