[Cdd-commits] r984 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Wed Jul 16 10:59:30 2008
New Revision: 984

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Added phyml.  Authors have a really unusual relation to their code.  Even if GPLed they do not want to provide tarball and when I gave them the hint, that Debian packaging means that there will be a publicly available tarball, I've got the answer:

Date: Wed, 27 Feb 2008 14:19:12 +0100
From: Olivier GASCUEL <gascuel at lirmm.fr>

In fact, I'm not confortable in having the source code available this way.
I prefer knowing what people do with our code, which version they use,
etc. We'll discuss this with Stephane.



Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Wed Jul 16 10:59:30 2008
@@ -1664,3 +1664,24 @@
  .
  This splits up into a library package which reads the format and a
  doc package which documents to format.
+
+Depends: phyml
+Homepage: http://phyml.gforge.lirmm.fr/
+License: GPL
+Pkg-Description: estimate large phylogenies by maximum likelihood
+ A simple, fast, and accurate algorithm to estimate large phylogenies by
+ maximum likelihood.
+ .
+ More info given via mail contact:
+ .
+ Stephane Guindon: Thanks for your interest in PhyML. Building a separate
+ Debian package for PhyML is probably a good idea. It would fit perfectly
+ along with already available packages like MOLPHY or fastDNAml.
+ The sources of the latest version are available from
+ http://gforge.lirmm.fr/scm/?group_id=31
+ Note however that we are currently testing this version.
+ .
+ We chose not to put the tarball on our webpage because we'd like
+ to know what the people are doing with the sources (compile the
+ sources on a new architectures,  modify the code for their own
+ research project, etc.)