[Cdd-commits] r839 - projects/med/trunk/debian-med/tasks
CDD Subversion Commit
noreply at alioth.debian.org
Thu Jun 19 11:36:39 UTC 2008
Author: tille
Date: Thu Jun 19 11:36:39 2008
New Revision: 839
Modified:
projects/med/trunk/debian-med/tasks/bio
Log:
Added velvet
Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Thu Jun 19 11:36:39 2008
@@ -1545,3 +1545,23 @@
Note: Other sequence analysis tools (http://www.cbcb.umd.edu/software/);
no info about license or downloadable code found, but tried to
contact authors.
+
+Depends: velvet
+Homepage: http://www.ebi.ac.uk/~zerbino/velvet/
+License: GPL-2+
+WNPP: 487026
+Responsible: Charles Plessy <plessy at debian.org>
+Pkg-Description: Sequence assembler for very short reads
+ Velvet is a de novo genomic assembler specially designed for short read
+ sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and
+ Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near
+ Cambridge, in the United Kingdom.
+ .
+ Velvet currently takes in short read sequences, removes errors then produces
+ high quality unique contigs. It then uses paired read information, if
+ available, to retrieve the repeated areas between contigs.
+ .
+ Velvet was published in: `Velvet: algorithms for de novo short read assembly
+ using de Bruijn graphs. D.R. Zerbino and E. Birney. Genome Research
+ 18:821-829.'
+
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