[Cdd-commits] r608 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Fri Mar 14 07:21:15 2008
New Revision: 608

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Added gbrowse


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Fri Mar 14 07:21:15 2008
@@ -480,6 +480,7 @@
 Depends: galaxy
 Homepage: http://g2.trac.bx.psu.edu/
 License: MIT
+WNPP: 432472
 Pkg-Description: manipulate sequences and annotation files
  Galaxy is a web-based tool allowing users to perform operations which
  are usually done with command-line interface. Using galaxy, one can
@@ -711,3 +712,27 @@
  indels, and nucleotide substutition.
  .
  Mauve is developed at the University of Wisconsin.
+
+Depends: gbrowse
+Homepage: http://www.gmod.org/wiki/index.php/GBrowse
+Responsible: Charles Plessy <charles-debian-nospam at plessy.org>
+WNPP: 429610
+License: Perl Artistic License, plus additional clauses
+Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/gbrowse
+Pkg-Description: The Generic Genome Browser from GMOD
+ The Generic Genome Browser is a combination of database and interactive Web
+ page for manipulating and displaying annotations on genomes. Some of its
+ features:
+  * Simultaneous bird's eye and detailed views of the genome.
+  * Scroll, zoom, center.
+  * Attach arbitrary URLs to any annotation.
+  * Order and appearance of tracks are customizable by administrator and end-user.
+  * Search by annotation ID, name, or comment.
+  * Supports third party annotation using GFF formats.
+  * Settings persist across sessions.
+  * DNA and GFF dumps.
+  * Connectivity to different databases, including BioSQL and Chado.
+  * Multi-language support.
+  * Third-party feature loading.
+  * Customizable plug-in architecture (e.g. run BLAST, dump & import many formats,
+    find oligonucleotides, design primers, create restriction maps, edit features)