[Cdd-commits] r610 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Fri Mar 14 07:31:55 2008
New Revision: 610

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Added mira


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Fri Mar 14 07:31:55 2008
@@ -736,3 +736,22 @@
   * Third-party feature loading.
   * Customizable plug-in architecture (e.g. run BLAST, dump & import many formats,
     find oligonucleotides, design primers, create restriction maps, edit features)
+
+Depends: mira
+Homepage: http://chevreux.org/projects_mira.html
+Responsible: Charles Plessy <charles-debian-nospam at plessy.org>
+WNPP: 435915
+License: GPL
+Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/mira/trunk/?rev=0&sc=0
+Pkg-Description: Whole Genome Shotgun and EST Sequence Assembler
+ The mira genome fragment assembler is a specialised assembler for
+ sequencing projects classified as 'hard' due to high number of similar
+ repeats. For expressed sequence tags (ESTs) transcripts, miraEST is
+ specialised on reconstructing pristine mRNA transcripts while
+ detecting and classifying single nucleotide polymorphisms (SNP)
+ occuring in different variations thereof.
+ .
+ The assembler is routinely used for such various tasks as mutation
+ detection in different cell types, similarity analysis of transcripts
+ between organisms, and pristine assembly of sequences from various
+ sources for oligo design in clinical microarray experiments.