[Cdd-commits] r615 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Fri Mar 14 08:31:00 2008
New Revision: 615

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Added seq-gen


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Fri Mar 14 08:31:00 2008
@@ -799,3 +799,19 @@
  This program uses sources files from the Phylip program, which forbids
  its use for profit.  Therfore, Phylo_win will unfortunately have to be
  distributed in contrib or non-free.
+
+Depends: seq-gen
+Homepage: http://tree.bio.ed.ac.uk/software/seqgen/
+License: Free
+Pkg-Description: simulate the evolution of nucleotide or amino acid sequences
+ Seq-Gen is a program that will simulate the evolution of nucleotide or
+ amino acid sequences along a phylogeny, using common models of the
+ substitution process. A range of models of molecular evolution are
+ implemented including the general reversible model. State frequencies
+ and other parameters of the model may be given and site-specific rate
+ heterogeneity may also be incorporated in a number of ways. Any number
+ of trees may be read in and the program will produce any number of data
+ sets for each tree. Thus large sets of replicate simulations can be easily
+ created. It has been designed to be a general purpose simulator that
+ incorporates most of the commonly used (and computationally tractable)
+ models of molecular sequence evolution.