[Cdd-commits] r619 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Fri Mar 14 12:18:05 2008
New Revision: 619

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Added populations


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Fri Mar 14 12:18:05 2008
@@ -834,3 +834,21 @@
  gBioSeq is in an early stage of development, but it is already running.
  The goal is to provide an easy to use software to edit DNA sequences under
  Linux, Windows, MacOsX, using GTK C# (Mono).
+
+Depends: populations
+Homepage: http://bioinformatics.org/~tryphon/populations/
+License: GPL
+Pkg-Description: individuals or populations distances based on allelic frequencies
+ Population genetic software (individuals or populations distances, phylogenetic trees)
+  * haploids, diploids or polyploids genotypes (see input formats)
+  * structured populations (see input files structured populations
+  * No limit of populations, loci, alleles per loci (see input formats)
+  * Distances between individuals (15 different methods)
+  * Distances between populations (15 methods)
+  * Bootstraps on loci OR individuals
+  * Phylogenetic trees (individuals or populations), using Neighbor Joining or UPGMA
+    (PHYLIP tree format)
+  * Allelic diversity
+  * Converts data files from Genepop to different formats (Genepop, Genetix, Msat,
+    Populations...)
+