[Cdd-commits] r736 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Thu May  8 08:31:17 2008
New Revision: 736

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Readded velvet which was stupidly overriden by myself


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Thu May  8 08:31:17 2008
@@ -1397,6 +1397,23 @@
  part of the AMOS suite.
 Note: Genome assembly and large-scale genome alignment (http://www.cbcb.umd.edu/software/)
 
+Depends: velvet
+Homepage: http://www.ebi.ac.uk/~zerbino/velvet/
+License: GPL
+Pkg-Description:
+ Velvet is a de novo genomic assembler specially designed for short
+ read sequencing technologies, such as Solexa or 454, developed by
+ Daniel Zerbino and Ewan Birney at the European Bioinformatics
+ Institute (EMBL-EBI), near Cambridge, in the United Kingdom.
+ .
+ Velvet currently takes in short read sequences, removes errors then
+ produces high quality unique contigs. It then uses paired read
+ information, if available, to retrieve the repeated areas between
+ contigs.
+Note: The web site says GPL-3, but the tar archive contains a copy of
+ the GPL-2. It also contain a PDF manual whose sources are missing.
+ The final package would depend on zlib.
+
 Depends: mirbase
 Homepage: http://microrna.sanger.ac.uk/
 License: Public Domain