[Cdd-commits] r751 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Wed May 21 14:14:09 2008
New Revision: 751

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Added transtermhp


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Wed May 21 14:14:09 2008
@@ -1476,4 +1476,17 @@
 Pkg-Description: fast computation of maximal repeats in complete genomes
  A software tool was implemented that computes exact repeats and
  palindromes in entire genomes very efficiently.
-Note: Download site (temporarily) not available
+Note: Download site (temporarily) not available - try to contact author
+
+Depends: transtermhp
+Homepage: http://transterm.cbcb.umd.edu/index.php
+License: Free
+Pkg-Description: finds rho-independent transcription terminators in bacterial genomes
+ finds rho-independent transcription terminators in bacterial
+ genomes. Each terminator found by the program is assigned a
+ confidence value that estimates its probability of being a true
+ terminator. TransTermHP is described in: C. Kingsford, K. Ayanbule
+ and S.L. Salzberg. Rapid, accurate, computational discovery of
+ Rho-independent transcription terminators illuminates their
+ relationship to DNA uptake. Genome Biology 8:R22 (2007).
+Note: Other sequence analysis tools (http://www.cbcb.umd.edu/software/)