[Cdd-commits] r1117 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Thu Oct  2 11:58:18 2008
New Revision: 1117

Modified:
   projects/med/trunk/debian-med/tasks/bio
   projects/med/trunk/debian-med/tasks/bio-dev
   projects/med/trunk/debian-med/tasks/imaging
Log:
Added some forgotten dependencies


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Thu Oct  2 11:58:18 2008
@@ -20,6 +20,7 @@
 
 Depends:     adun.app, garlic, gdpc, ghemical, gromacs, pymol, rasmol, autodock, autogrid, r-other-bio3d
 Why:         Molecular modelling and molecular dynamics.
+Comment:     r-other-bio3d depends from r-cran-rocr which is also maintained by Debian Med team
 
 Depends:     plasmidomics
 Why:         Presentation
@@ -35,6 +36,8 @@
 Depends: glam2
 Why:         Motif search
 
+Depends: mafft, rnahybrid
+
 Suggests: biococoa.app
 Why: Only suggests, because current version in Debian breaks, has new upstream -
      at least version 1.7 might run under Linux, the new designed 2.0 seems to
@@ -624,24 +627,6 @@
  .
  Information on DAS is available from http://www.biodas.org/
 
-Depends: mgltools
-Homepage: http://mgltools.scripps.edu
-Responsible: Steffen Moeller <moeller at debian.org>
-WNPP: 458811
-License: various custom non-free, mostly academia-only
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/trunk/?rev=0&sc=0
-Pkg-Description: preparation of proteins and ligands to investigate their binding
- The package comprises AutoDockTools, Python Molecular Viewer, Vision and
- many helping smaller python libraries which shall all become available
- as Debian packages ... if their license permits. The essential mslib
- library for instance comes with binaries which should not go into
- Debian.  The analysis itself is performed with AutoDock, which was
- recently made available under the GPL.
- .
- Upstream is very supportive but their binary-only libraries are of a
- third party. This set of tools is well known across biochemistry and
- computational/structural biology.
-
 Depends: ecell
 Homepage: http://www.e-cell.org/
 Responsible: Steffen Moeller <moeller at debian.org>

Modified: projects/med/trunk/debian-med/tasks/bio-dev
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-dev	(original)
+++ projects/med/trunk/debian-med/tasks/bio-dev	Thu Oct  2 11:58:18 2008
@@ -30,7 +30,11 @@
 
 Depends: mgltools-pybabel, mgltools-scenario, mgltools-symserv, mgltools-pyautodock
 
-Suggests: mgltools-viewerframework, mgltools-support, mgltools-networkeditor
+Suggests: mgltools-viewerframework, mgltools-support, mgltools-networkeditor, mgltools-gle, mgltools-molkit
+
+Suggests: mgltools-mglutil
+Comment: Will be needed by mgltools-autodocktools but this package does not yet
+         exist and so we track information about mgltools-mglutil here as suggests.
 
 Depends: bioconductor
 Homepage: http://www.bioconductor.org/

Modified: projects/med/trunk/debian-med/tasks/imaging
==============================================================================
--- projects/med/trunk/debian-med/tasks/imaging	(original)
+++ projects/med/trunk/debian-med/tasks/imaging	Thu Oct  2 11:58:18 2008
@@ -118,6 +118,8 @@
 Depends: slicer
 Homepage: http://www.slicer.org/
 License: BSD like
+WNPP: 500841
+Responsible: Dominique Belhachemi <domibel at cs.tu-berlin.de>
 Pkg-Description: visualization, registration, segmentation, and quantification of medical data
  The 3D Slicer is freely available, open-source software for visualization,
  registration, segmentation, and quantification of medical data. The slicer