[Cdd-commits] r1060 - projects/med/trunk/debian-med/tasks
CDD Subversion Commit
noreply at alioth.debian.org
Fri Sep 5 14:14:52 UTC 2008
Author: tille
Date: Fri Sep 5 14:14:52 2008
New Revision: 1060
Modified:
projects/med/trunk/debian-med/tasks/bio
Log:
More BioLinux stuff, mention the real maintainer instead of helpdesk
Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Fri Sep 5 14:14:52 2008
@@ -1631,7 +1631,7 @@
Depends: artemis
Homepage: http://www.sanger.ac.uk/Software/Artemis/
License: GPL 2+
-Responsible: BioLinux <helpdesk at nebc.nox.ac.uk>
+Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
Pkg-Description: genome viewer and annotation tool
Artemis is a free genome viewer and annotation tool that allows visualization
@@ -1641,7 +1641,7 @@
database entries or sequence in FASTA or raw format. Extra sequence features
can be in EMBL, GENBANK or GFF format.
.
- This package is include into BioLinux distribution
+ This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
Depends: srf
@@ -1714,7 +1714,7 @@
Homepage: http://www.sanger.ac.uk/Software/ACT/
License: GPL
Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
-Responsible: BioLinux <helpdesk at nebc.nox.ac.uk>
+Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
Pkg-Description: DNA Sequence Comparison Viewer
ACT (Artemis Comparison Tool) is a DNA sequence comparison viewer
based on Artemis. In common with Artemis, ACT is written in Java and
@@ -1956,7 +1956,7 @@
Depends: r-ape
Homepage: http://ape.mpl.ird.fr/
License: GPL
-Responsible: BioLinux <helpdesk at nebc.nox.ac.uk>
+Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
Pkg-Description: Analyses of Phylogenetics and Evolution
APE (Analyses of Phylogenetics and Evolution) is a package written in R.
@@ -1964,13 +1964,13 @@
evolutionary data, and an environment to develop and implement new
analytical methods.
.
- This package is include into BioLinux distribution
+ This package is included into BioLinux distribution
http://envgen.nox.ac.uk/biolinux.html
Depends: caftools
Homepage: http://www.sanger.ac.uk/Software/formats/CAF/userguide.shtml
License: Free for non-commercial purposes
-Responsible: BioLinux <helpdesk at nebc.nox.ac.uk>
+Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
Pkg-Description: Tools to maintain DNA sequence assemblies
This is V2 of the CAF (Common Assembly Format) C-tools. It comprises
@@ -1995,7 +1995,7 @@
Depends: roche454ace2caf
Homepage: http://genome.imb-jena.de/software/roche454ace2caf/
License: not specified
-Responsible: BioLinux <helpdesk at nebc.nox.ac.uk>
+Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
Pkg-Description: convert GS20 or FLX assemblies into CAF format
Some tools to convert GS20 or FLX assemblies (454Contigs.ace) into
@@ -2019,3 +2019,16 @@
assemblies to be converted into formats such as CAF (Common Assembly
Format) or GAP4. This package includes tools to convert assemblies
from Newbler's ace format for loading into a gap4 assembly.
+
+Depends: big-blast
+Homepage: ftp://ftp.sanger.ac.uk/pub/pathogens/software/artemis/extra/big_blast.pl
+License: not specified
+Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
+Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
+Pkg-Description: Helper tool to run blast on large sequences
+ This script will chop up a large sequence, run blast on each bit and
+ then write out an EMBL feature table and a MSPcrunch -d file
+ containing the hits.
+ .
+ This package is included into BioLinux distribution
+ http://envgen.nox.ac.uk/biolinux.html
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