[Cdd-commits] r1060 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Fri Sep  5 14:14:52 2008
New Revision: 1060

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
More BioLinux stuff, mention the real maintainer instead of helpdesk


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Fri Sep  5 14:14:52 2008
@@ -1631,7 +1631,7 @@
 Depends: artemis
 Homepage: http://www.sanger.ac.uk/Software/Artemis/
 License: GPL 2+
-Responsible: BioLinux <helpdesk at nebc.nox.ac.uk>
+Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
 Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
 Pkg-Description: genome viewer and annotation tool
  Artemis is a free genome viewer and annotation tool that allows visualization
@@ -1641,7 +1641,7 @@
  database entries or sequence in FASTA or raw format. Extra sequence features
  can be in EMBL, GENBANK or GFF format.
  .
- This package is include into BioLinux distribution
+ This package is included into BioLinux distribution
  http://envgen.nox.ac.uk/biolinux.html
 
 Depends: srf
@@ -1714,7 +1714,7 @@
 Homepage: http://www.sanger.ac.uk/Software/ACT/
 License: GPL
 Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
-Responsible: BioLinux <helpdesk at nebc.nox.ac.uk>
+Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
 Pkg-Description: DNA Sequence Comparison Viewer
  ACT (Artemis Comparison Tool) is a DNA sequence comparison viewer
  based on Artemis. In common with Artemis, ACT is written in Java and
@@ -1956,7 +1956,7 @@
 Depends: r-ape
 Homepage: http://ape.mpl.ird.fr/
 License: GPL
-Responsible: BioLinux <helpdesk at nebc.nox.ac.uk>
+Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
 Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
 Pkg-Description: Analyses of Phylogenetics and Evolution
  APE (Analyses of Phylogenetics and Evolution) is a package written in R.
@@ -1964,13 +1964,13 @@
  evolutionary data, and an environment to develop and implement new
  analytical methods.
  .
- This package is include into BioLinux distribution
+ This package is included into BioLinux distribution
  http://envgen.nox.ac.uk/biolinux.html
 
 Depends: caftools
 Homepage: http://www.sanger.ac.uk/Software/formats/CAF/userguide.shtml
 License: Free for non-commercial purposes
-Responsible: BioLinux <helpdesk at nebc.nox.ac.uk>
+Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
 Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
 Pkg-Description: Tools to maintain DNA sequence assemblies
  This is V2 of the CAF (Common Assembly Format) C-tools.  It comprises
@@ -1995,7 +1995,7 @@
 Depends: roche454ace2caf
 Homepage: http://genome.imb-jena.de/software/roche454ace2caf/
 License: not specified
-Responsible: BioLinux <helpdesk at nebc.nox.ac.uk>
+Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
 Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
 Pkg-Description: convert GS20 or FLX assemblies into CAF format
  Some tools to convert GS20 or FLX assemblies (454Contigs.ace) into
@@ -2019,3 +2019,16 @@
  assemblies to be converted into formats such as CAF (Common Assembly
  Format) or GAP4. This package includes tools to convert assemblies
  from Newbler's ace format for loading into a gap4 assembly.
+
+Depends: big-blast
+Homepage: ftp://ftp.sanger.ac.uk/pub/pathogens/software/artemis/extra/big_blast.pl
+License: not specified
+Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
+Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
+Pkg-Description: Helper tool to run blast on large sequences
+ This script will chop up a large sequence, run blast on each bit and
+ then write out an EMBL feature table and a MSPcrunch -d file
+ containing the hits.
+ .
+ This package is included into BioLinux distribution
+ http://envgen.nox.ac.uk/biolinux.html