[Cdd-commits] r1084 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Fri Sep 12 08:23:00 2008
New Revision: 1084

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Added partigene


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Fri Sep 12 08:23:00 2008
@@ -2649,7 +2649,6 @@
 Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
 Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
 Pkg-Description: Phylogenetic Analysis by Maximum Likelihood
-
  PAML is a package of programs for phylogenetic analyses of DNA or
  protein sequences using maximum likelihood. It is maintained and
  distributed for academic use free of charge by Ziheng Yang. ANSI C
@@ -2661,3 +2660,19 @@
  .
  This package is included into BioLinux distribution
  http://envgen.nox.ac.uk/biolinux.html
+
+Depends: partigene
+Homepage: http://www.nematodes.org/bioinformatics/PartiGene/
+License: GPL
+Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
+Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
+Pkg-Description: generating partial gemomes
+ PartiGene is part of the Edinburgh-EGTDC developed EST-software
+ pipeline at the moment consisting of trace2dbEST, PartiGene,
+ wwwPartiGene, port4EST and annot8r. PartiGene is a menu-driven,
+ multi-step software tool which takes sequences (usually ESTs) and
+ creates a dataabase of a non-redundant set of sequence objects
+ (putative genes) which we term a partial genome. 
+ .
+ This package is included into BioLinux distribution
+ http://envgen.nox.ac.uk/biolinux.html