[Cdd-commits] r1316 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Mon Jan 19 14:24:47 2009
New Revision: 1316

Modified:
   projects/med/trunk/debian-med/tasks/bio
   projects/med/trunk/debian-med/tasks/imaging
Log:
last-align needs no manual infomration any more because it is in the package pool; fixed typo in imaging


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Mon Jan 19 14:24:47 2009
@@ -42,6 +42,8 @@
 
 Depends: mafft, rnahybrid
 
+Depends: last-align
+
 Suggests: biococoa.app
 Why: Only suggests, because current version in Debian breaks, has new upstream -
      at least version 1.7 might run under Linux, the new designed 2.0 seems to
@@ -1637,29 +1639,6 @@
  Please note: There is a Debian package beast which is completely unrelated
  to this project.
 
-Depends: last-align
-Homepage://last.cbrc.jp/
-License: GPL-3+
-Responsible: Charles Plessy <plessy at debian.org>
-WNPP: 498562
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/last-align/trunk/?rev=0&sc=0
-Pkg-Description: genome-scale comparison of biological sequences.
- LAST is software for comparing and aligning sequences, typically DNA
- or protein sequences. LAST is similar to BLAST, but it copes better
- with very large amounts of sequence data. Here are two things LAST is
- good at:
- .
-  * Comparing large (e.g. mammalian) genomes.
-  * Mapping lots of sequence tags onto a genome.
- .
- The main technical innovation is that LAST finds initial matches
- based on their multiplicity, instead of using a fixed size
- (e.g. BLAST uses 11-mers).  This allows us to map tags to genomes
- without repeat-masking, without becoming overwhelmed by repetitive
- hits. To find these variable-sized matches, it uses a suffix array
- (inspired by Vmatch). To achieve high sensitivity, it uses a
- discontiguous suffix array, analogous to spaced seeds.
-
 Depends: artemis
 Homepage: http://www.sanger.ac.uk/Software/Artemis/
 License: GPL 2+

Modified: projects/med/trunk/debian-med/tasks/imaging
==============================================================================
--- projects/med/trunk/debian-med/tasks/imaging	(original)
+++ projects/med/trunk/debian-med/tasks/imaging	Mon Jan 19 14:24:47 2009
@@ -536,7 +536,7 @@
 Depends: micromanager
 Homepage: http://www.micro-manager.org/
 License: free
-Resonsible: Paolo Ariano <paolo.ariano at unito.it>
+Responsible: Paolo Ariano <paolo.ariano at unito.it>
 Pkg-Description: imaging and control of automated microscopes, shutters, cameras etc.
  µManager is an Open Source software package for imaging and control
  of automated microscopes. Together with ImageJ, a popular image processing