[Collab-qa-commits] r2224 - in packages-metadata: c e g k l r s t
Charles Plessy
plessy at alioth.debian.org
Wed Apr 18 01:30:11 UTC 2012
Author: plessy
Date: 2012-04-18 01:30:09 +0000 (Wed, 18 Apr 2012)
New Revision: 2224
Modified:
packages-metadata/c/cpanminus.copyright
packages-metadata/e/edfbrowser.copyright
packages-metadata/g/gwyddion.upstream
packages-metadata/k/kalign.upstream
packages-metadata/l/liblivemedia.copyright
packages-metadata/l/libplack-perl.copyright
packages-metadata/l/libpoe-component-client-keepalive-perl.copyright
packages-metadata/r/r-bioc-limma.copyright
packages-metadata/r/rasmol.upstream
packages-metadata/s/shared-desktop-ontologies.copyright
packages-metadata/t/tophat.copyright
Log:
Upload-driven and CRON-driven updates.
Modified: packages-metadata/c/cpanminus.copyright
===================================================================
--- packages-metadata/c/cpanminus.copyright 2012-04-11 23:29:10 UTC (rev 2223)
+++ packages-metadata/c/cpanminus.copyright 2012-04-18 01:30:09 UTC (rev 2224)
@@ -23,7 +23,7 @@
License: Artistic or GPL-1+
Files: debian/*
-Copyright: 2011, Alessandro Ghedini <al3xbio at gmail.com>
+Copyright: 2011, Alessandro Ghedini <ghedo at debian.org>
License: Artistic or GPL-1+
License: Artistic
Modified: packages-metadata/e/edfbrowser.copyright
===================================================================
--- packages-metadata/e/edfbrowser.copyright 2012-04-11 23:29:10 UTC (rev 2223)
+++ packages-metadata/e/edfbrowser.copyright 2012-04-18 01:30:09 UTC (rev 2224)
@@ -1,37 +1,86 @@
-Format-Specification: http://svn.debian.org/wsvn/dep/web/deps/dep5.mdwn?op=file&rev=135
-Name: edfbrowser
-Maintainer: Teunis van Beelen <teuniz at gmail.com>
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: edfbrowser
+Upstream-Contact: Teunis van Beelen <teuniz at gmail.com>
Source: http://www.teuniz.net/edfbrowser/
-
Files: *
-Copyright: 2007,2008,2009 Teunis van Beelen <teuniz at gmail.com>
+Copyright: 2007 - 2012 Teunis van Beelen <teuniz at gmail.com>
License: GPL-2
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation version 2 of the License.
-
+ .
This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
General Public License for more details.
- .
+ .
You should have received a copy of the GNU General Public License
along with this package; if not, write to the Free Software
Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301
USA
- .
+ .
On Debian systems, the full text of the GNU General Public License
version 2 can be found in the file `/usr/share/common-licenses/GPL-2'.
+Files: third_party/fidlib/*
+Copyright: 2002-2004 Jim Peters <http://uazu.net/>
+License: LGPL-2.1
+ This library is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Lesser General Public
+ License as published by the Free Software Foundation; either
+ version 2.1 of the License, or (at your option) any later version.
+ .
+ This library is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ Lesser General Public License for more details.
+ .
+ You should have received a copy of the GNU Lesser General Public
+ License along with this library; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
+ .
+ On Debian systems, the full text of the GNU Lesser General Public
+ License version 2.1 can be found in the file
+ `/usr/share/common-licenses/LGPL-2.1'.
+
+Files: third_party/kiss_fft/*
+Copyright: 2003-2010, Mark Borgerding
+License: BSD-like
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided th at the following conditions are
+ met:
+ .
+ * Redistributions of source code must retain the above copyright
+ notice, this list of conditions and the following disclaimer.
+ * Redistributions in binary form must reproduce the above copyright
+ notice, this list of conditions and the following disclaimer in the
+ documentation and/or other materials provided with the distribution.
+ * Neither the author nor the names of any contributors may be used to
+ endorse or promote products derived from this software without specific
+ prior written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS
+ IS" AND ANY EXPRESS OR IMPLIED WAR RANTIES, INCLUDING, BUT NOT LIMITED
+ TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTIC
+ ULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
+ CONTRIBUTORS BE LIABLE FOR ANY DIREC T, INDIRECT, INCIDENTAL, SPECIAL,
+ EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROC
+ UREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+ OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+ WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENC E OR
+ OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+ ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
Files: debian/*
-Copyright: 2009,2010 Bas Zoetekouw <bas at debian.org>
+Copyright: 2009-2010 Bas Zoetekouw <bas at debian.org>
+ 2011-2012 Andreas Tille <tille at debian.org>
License: ISC
Permission to use, copy, modify, and/or distribute this software for
any purpose with or without fee is hereby granted, provided that the
above copyright notice and this permission notice appear in all
copies.
- .
+ .
THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL
WARRANTIES WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE
@@ -40,3 +89,4 @@
OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER
TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR
PERFORMANCE OF THIS SOFTWARE.
+
Modified: packages-metadata/g/gwyddion.upstream
===================================================================
--- packages-metadata/g/gwyddion.upstream 2012-04-11 23:29:10 UTC (rev 2223)
+++ packages-metadata/g/gwyddion.upstream 2012-04-18 01:30:09 UTC (rev 2224)
@@ -8,7 +8,7 @@
ISSN: 1895-1082
Pages: 181-188
Volume: 10
- Issue: 1
+ Number: 1
Year: 2012
DOI: 10.2478/s11534-011-0096-2
URL: http://www.springerlink.com/content/21716522802h0404/
Modified: packages-metadata/k/kalign.upstream
===================================================================
--- packages-metadata/k/kalign.upstream 2012-04-11 23:29:10 UTC (rev 2223)
+++ packages-metadata/k/kalign.upstream 2012-04-18 01:30:09 UTC (rev 2224)
@@ -12,7 +12,7 @@
DOI: 10.1093/nar/gkn1006
PMID: 19103665
URL: http://nar.oxfordjournals.org/cgi/content/abstract/37/3/858
- - Authors: Lassmann, Timo and Sonnhammer, Erik L. L.
+ - Author: Lassmann, Timo and Sonnhammer, Erik L. L.
Title: Kalign--an accurate and fast multiple sequence alignment algorithm
Journal: BMC Bioinformatics
Volume: 6
Modified: packages-metadata/l/liblivemedia.copyright
===================================================================
--- packages-metadata/l/liblivemedia.copyright 2012-04-11 23:29:10 UTC (rev 2223)
+++ packages-metadata/l/liblivemedia.copyright 2012-04-18 01:30:09 UTC (rev 2224)
@@ -1,28 +1,31 @@
-This package was initially debianized by Sam Hocevar <sam at zoy.org> on
-Mon, 9 Feb 2004 22:31:50 +0100.
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: LIVE555 Streaming Media
+Upstream-Contact: live-devel at lists.live555.com
+Source: http://live555.com/liveMedia/public/
-This package is maintained since 2008 by Christophe Mutricy
-<xtophe at videolan.org>
+Files: *
+Copyright: 1996-2012 Live Networks, Inc. All rights reserved.
+License: LGPL-2.1+
-It was downloaded from http://www.live555.com/liveMedia/public/
+Files: debian/*
+Copyright:
+ 2012 Alessio Treglia <alessio at debian.org>
+ 2008 Christophe Mutricy <xtophe at videolan.org>
+License: LGPL-2.1+
-Upstream Authors: Live Networks, Inc. <http://www.live.com/>
-
-Copyright (c) 1996-2012 Live Networks, Inc. All rights reserved.
-
- This library is free software; you can redistribute it and/or
- modify it under the terms of the GNU Lesser General Public
- License as published by the Free Software Foundation; either
- version 2.1 of the License, or (at your option) any later version.
-
- This library is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
- Lesser General Public License for more details.
-
- You should have received a copy of the GNU Lesser General Public
- License along with this library; if not, write to the Free Software
- Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-
-On Debian GNU/Linux systems, the complete text of the GNU Lesser General
-Public License can be found in `/usr/share/common-licenses/LGPL-2.1'.
+License: LGPL-2.1+
+ This library is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Lesser General Public
+ License as published by the Free Software Foundation; either
+ version 2.1 of the License, or (at your option) any later version.
+ .
+ This library is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ Lesser General Public License for more details.
+Comment:
+ On Debian GNU/Linux systems, the complete text of the GNU Lesser General
+ Public License can be found in `/usr/share/common-licenses/LGPL-2.1'.
+ .
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library. If not, see <http://www.gnu.org/licenses/>.
Modified: packages-metadata/l/libplack-perl.copyright
===================================================================
--- packages-metadata/l/libplack-perl.copyright 2012-04-11 23:29:10 UTC (rev 2223)
+++ packages-metadata/l/libplack-perl.copyright 2012-04-18 01:30:09 UTC (rev 2224)
@@ -18,7 +18,7 @@
2010-2011, Krzysztof Krzyżaniak (eloy) <eloy at debian.org>
2010-2011, gregor herrmann <gregoa at debian.org>
2010, Iñigo Tejedor Arrondo <poisonbit at gmail.com>
- 2012, Alessandro Ghedini <al3xbio at gmail.com>
+ 2012, Alessandro Ghedini <ghedo at debian.org>
License: Artistic or GPL-1+
License: Artistic
Modified: packages-metadata/l/libpoe-component-client-keepalive-perl.copyright
===================================================================
--- packages-metadata/l/libpoe-component-client-keepalive-perl.copyright 2012-04-11 23:29:10 UTC (rev 2223)
+++ packages-metadata/l/libpoe-component-client-keepalive-perl.copyright 2012-04-18 01:30:09 UTC (rev 2224)
@@ -13,6 +13,7 @@
2008, Ernesto Hernández-Novich (USB) <emhn at usb.ve>
2008, Roberto C. Sanchez <roberto at connexer.com>
2009-2011, Jonathan Yu <jawnsy at cpan.org>
+ 2012, Florian Schlichting <fschlich at zedat.fu-berlin.de>
License: Artistic or GPL-1+
License: Artistic
Modified: packages-metadata/r/r-bioc-limma.copyright
===================================================================
--- packages-metadata/r/r-bioc-limma.copyright 2012-04-11 23:29:10 UTC (rev 2223)
+++ packages-metadata/r/r-bioc-limma.copyright 2012-04-18 01:30:09 UTC (rev 2224)
@@ -1,8 +1,13 @@
Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
-Source: http://www.bioconductor.org/packages/2.9/bioc/src/contrib/limma_3.10.3.tar.gz
+Source: http://www.bioconductor.org/packages/release/bioc/src/contrib/limma_3.12.0.tar.gz
inst/doc/usersguide.pdf is not accompanied by its source, and therefore removed in the “dfsg” version.
+Comment: licensing discussed on https://stat.ethz.ch/pipermail/bioc-devel/2011-May/002620.html
+License: GPL-2
+ LIMMA combines LGPL-2+ and GPL-2+ code, and depends on R (GPL-2) and the GNU C
+ library (LGPL-2.1+). Taken as a whole, its license is effectively GPL-2, plus
+ perhaps some additional BSD-like requirements depending on what it uses from
+ the GNU C library.
Removed: inst/doc/usersguide.pdf
-Comment: licensing discussed on https://stat.ethz.ch/pipermail/bioc-devel/2011-May/002620.html
Files: *
Copyright: Gordon Smyth <smyth at wehi.edu.au>
Modified: packages-metadata/r/rasmol.upstream
===================================================================
--- packages-metadata/r/rasmol.upstream 2012-04-11 23:29:10 UTC (rev 2223)
+++ packages-metadata/r/rasmol.upstream 2012-04-18 01:30:09 UTC (rev 2224)
@@ -2,7 +2,7 @@
Name: RasMol
Reference:
author: Roger Sayle and E. James Milner-White
- title: RasMol: Biomolecular graphics for all
+ title: "RasMol: Biomolecular graphics for all"
journal: Trends in Biochemical Sciences (TIBS)
volume: 20
number: 9
Modified: packages-metadata/s/shared-desktop-ontologies.copyright
===================================================================
--- packages-metadata/s/shared-desktop-ontologies.copyright 2012-04-11 23:29:10 UTC (rev 2223)
+++ packages-metadata/s/shared-desktop-ontologies.copyright 2012-04-18 01:30:09 UTC (rev 2224)
@@ -1,4 +1,4 @@
-Format: http://svn.debian.org/wsvn/dep/web/deps/dep5.mdwn?op=file&rev=174
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: shared-desktop-ontologies
Upstream-Contact: Evgeny Egorochkin <phreedom.stdin at gmail.com>
Leo Sauermann <leo.sauermann at dfki.de>
Modified: packages-metadata/t/tophat.copyright
===================================================================
--- packages-metadata/t/tophat.copyright 2012-04-11 23:29:10 UTC (rev 2223)
+++ packages-metadata/t/tophat.copyright 2012-04-18 01:30:09 UTC (rev 2224)
@@ -1,7 +1,7 @@
-Format: http://dep.debian.net/deps/dep5
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: TopHat
Upstream-Contact: Cole Trapnell <cole at cs.umd.edu>
-Source: http://tophat.cbcb.umd.edu/downloads/tophat-1.4.1.tar.gz
+Source: http://tophat.cbcb.umd.edu/downloads/tophat-2.0.0.tar.gz
Comment:
Cole Trapnell wrote TopHat. TopHat is built on Bowtie, which was written by
Ben Langmead and Cole Trapnell. Daehwan Kim and Geo Pertea added support
@@ -13,37 +13,6 @@
Copyright: © 2003-2010 Cole Trapnell et al
License: Artistic
-Files: src/SeqAn-1.2/*
-Upstream-Name: SeqAn
-Copyright: © 2007
-License: LGPL-3+
- This library is free software; you can redistribute it and/or
- modify it under the terms of the GNU Lesser General Public
- License as published by the Free Software Foundation; either
- version 3 of the License, or (at your option) any later version.
- .
- This library is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
- Lesser General Public License for more details.
- .
- On Debian systems, the complete text of the GNU Lesser General Public License
- version 3 can be found in the files ‘/usr/share/common-licenses/LGPL-3’ and
- ‘/usr/share/common-licenses/GPL-3’.
-
-Files: src/SeqAn-1.2/index_sa_lss.h
-Copyright: © 1999, N. Jesper Larsson, all rights reserved.
-License: qsufsort.c
- This file contains an implementation of the algorithm presented in "Faster
- Suffix Sorting" by N. Jesper Larsson (jesper at cs.lth.se) and Kunihiko
- Sadakane (sada at is.s.u-tokyo.ac.jp).
- .
- This software may be used freely for any purpose. However, when distributed,
- the original source must be clearly stated, and, when the source code is
- distributed, the copyright notice must be retained and any alterations in
- the code must be clearly marked. No warranty is given regarding the quality
- of this software.
-
Files: ax_bam.m4
Copyright: © 2010 Cole Trapnell <cole at cs.umd.edu>
License: GAP
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