[Collab-qa-commits] r2244 - in packages-metadata: a e k m p s
Charles Plessy
plessy at alioth.debian.org
Thu Apr 26 03:00:30 UTC 2012
Author: plessy
Date: 2012-04-26 03:00:30 +0000 (Thu, 26 Apr 2012)
New Revision: 2244
Added:
packages-metadata/a/amap-align.upstream
packages-metadata/p/pymvpa.upstream
Modified:
packages-metadata/a/altree.upstream
packages-metadata/e/exonerate.upstream
packages-metadata/k/kalign.upstream
packages-metadata/m/maq.copyright
packages-metadata/p/pymvpa.copyright
packages-metadata/s/seqan.upstream
Log:
Daily automatic umegaya push
Modified: packages-metadata/a/altree.upstream
===================================================================
--- packages-metadata/a/altree.upstream 2012-04-25 09:08:49 UTC (rev 2243)
+++ packages-metadata/a/altree.upstream 2012-04-26 03:00:30 UTC (rev 2244)
@@ -11,6 +11,7 @@
Title: >
ALTree: association detection and localization of susceptibility sites using haplotype phylogenetic trees
URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/22/11/1402
+ eprint: http://bioinformatics.oxfordjournals.org/cgi/reprint/22/11/1402.pdf
Volume: 22
Year: 2006
Watch: http://claire.bardel.free.fr/files/altree-([[:digit:]].*)\.tar\.gz
Added: packages-metadata/a/amap-align.upstream
===================================================================
--- packages-metadata/a/amap-align.upstream (rev 0)
+++ packages-metadata/a/amap-align.upstream 2012-04-26 03:00:30 UTC (rev 2244)
@@ -0,0 +1,11 @@
+Reference:
+ Author: Ariel S. Schwartz and Lior Pachter
+ Title: Multiple alignment by sequence annealing
+ Journal: Bioinformatics
+ Year: 2007
+ Volume: 23
+ Number: 2
+ Pages: e24-e29
+ DOI: 10.1093/bioinformatics/btl311
+ URL: http://bioinformatics.oxfordjournals.org/content/23/2/e24
+ eprint: http://bioinformatics.oxfordjournals.org/content/23/2/e24.full.pdf+html
Modified: packages-metadata/e/exonerate.upstream
===================================================================
--- packages-metadata/e/exonerate.upstream 2012-04-25 09:08:49 UTC (rev 2243)
+++ packages-metadata/e/exonerate.upstream 2012-04-26 03:00:30 UTC (rev 2244)
@@ -12,5 +12,6 @@
DOI: 10.1186/1471-2105-6-31
PMID: 15713233
URL: http://www.biomedcentral.com/1471-2105/6/31
+ eprint: http://www.biomedcentral.com/content/pdf/1471-2105-6-31.pdf
ISSN: 1471-2105
Watch: http://www.ebi.ac.uk/~guy/exonerate/exonerate-([0-9.]*)\.tar\.gz
Modified: packages-metadata/k/kalign.upstream
===================================================================
--- packages-metadata/k/kalign.upstream 2012-04-25 09:08:49 UTC (rev 2243)
+++ packages-metadata/k/kalign.upstream 2012-04-26 03:00:30 UTC (rev 2244)
@@ -12,8 +12,9 @@
DOI: 10.1093/nar/gkn1006
PMID: 19103665
URL: http://nar.oxfordjournals.org/cgi/content/abstract/37/3/858
+ eprint: http://nar.oxfordjournals.org/cgi/reprint/37/3/858.pdf
- Author: Lassmann, Timo and Sonnhammer, Erik L. L.
- Title: Kalign--an accurate and fast multiple sequence alignment algorithm
+ Title: Kalign - an accurate and fast multiple sequence alignment algorithm
Journal: BMC Bioinformatics
Volume: 6
Number: 1
@@ -23,4 +24,5 @@
PMID: 16343337
URL: http://www.biomedcentral.com/1471-2105/6/298
eprint: http://www.biomedcentral.com/content/pdf/1471-2105-6-298.pdf
+ ISSN: 1471-2105
Watch: NA
Modified: packages-metadata/m/maq.copyright
===================================================================
--- packages-metadata/m/maq.copyright 2012-04-25 09:08:49 UTC (rev 2243)
+++ packages-metadata/m/maq.copyright 2012-04-26 03:00:30 UTC (rev 2244)
@@ -1,4 +1,4 @@
-Format: http://dep.debian.net/deps/dep5/
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Source: http://downloads.sourceforge.net/maq/maq-0.7.1.tar.bz2
Files: *
@@ -43,3 +43,4 @@
Andreas Tille <tille at debian.org>
License: same-as-upstream
Same as Maq itelf (see above).
+
Modified: packages-metadata/p/pymvpa.copyright
===================================================================
--- packages-metadata/p/pymvpa.copyright 2012-04-25 09:08:49 UTC (rev 2243)
+++ packages-metadata/p/pymvpa.copyright 2012-04-26 03:00:30 UTC (rev 2244)
@@ -1,50 +1,16 @@
-Format-Specification: http://svn.debian.org/wsvn/dep/web/deps/dep5.mdwn?op=file&rev=135
-Name: PyMVPA
-Source: http://www.pymvpa.org
- http://github.com/PyMVPA/PyMVPA
-X-References-bib:
- @Article{ pymvpa,
- author = "Michael Hanke and Yaroslav O. Halchenko and
- Per B. Sederberg and Emanuele Olivetti and Ingo Fründ and
- Jochem W. Rieger and Christoph S. Herrmann and James V. Haxby
- and Stephen José Hanson and Stefan Pollmann",
- title = "{PyMVPA}: A Unifying Approach to the Analysis of Neuroscientific Data",
- journal = "Frontiers in Neuroinformatics",
- year = "2009",
- volume = "3",
- number = "3",
- doi = "10.3389/neuro.11.003.2009",
- url = "http://dx.doi.org/10.3389/neuro.11.003.2009",
- note = "PMC2638552"
- }
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0
+Upstream-Name: PyMVPA
+Upstream-Contact: pkg-exppsy-pymvpa at lists.alioth.debian.org
+Source: http://github.com/PyMVPA/PyMVPA
-
Files: *
Copyright:
- 2006-2010, Michael Hanke <michael.hanke at gmail.com>
- 2007-2010, Yaroslav Halchenko <debian at onerussian.com>
+ 2006-2012, Michael Hanke <michael.hanke at gmail.com>
+ 2007-2012, Yaroslav Halchenko <debian at onerussian.com>
2007-2009, Per B. Sederberg <persed at princeton.edu>
2008, Emanuele Olivetti <emanuele at relativita.com>
License: Expat
- Permission is hereby granted, free of charge, to any person obtaining a copy
- of this software and associated documentation files (the "Software"), to deal
- in the Software without restriction, including without limitation the rights
- to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
- copies of the Software, and to permit persons to whom the Software is
- furnished to do so, subject to the following conditions:
- .
- The above copyright notice and this permission notice shall be included in
- all copies or substantial portions of the Software.
- .
- THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
- IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
- FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
- AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
- LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
- OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
- THE SOFTWARE.
-
Files: debian/*
Copyright: Copyright 2006-2010,
Michael Hanke <michael.hanke at gmail.com>
@@ -98,3 +64,23 @@
License: GPL-2
On Debian GNU/Linux systems, the complete text of the GPL-2 License
can be found in `/usr/share/common-licenses/GPL-2'.
+
+
+License: Expat
+ Permission is hereby granted, free of charge, to any person obtaining a copy
+ of this software and associated documentation files (the "Software"), to deal
+ in the Software without restriction, including without limitation the rights
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+ copies of the Software, and to permit persons to whom the Software is
+ furnished to do so, subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included in
+ all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+ THE SOFTWARE.
Added: packages-metadata/p/pymvpa.upstream
===================================================================
--- packages-metadata/p/pymvpa.upstream (rev 0)
+++ packages-metadata/p/pymvpa.upstream 2012-04-26 03:00:30 UTC (rev 2244)
@@ -0,0 +1,12 @@
+Name: pymvpa
+Reference:
+ - Author: Michael Hanke and Yaroslav O. Halchenko and Per B. Sederberg and Stephen Jos{\'e} Hanson and James V. Haxby and Stefan Pollmann
+ Title: 'PyMVPA: A Python toolbox for multivariate pattern analysis of fMRI data'
+ Journal: Neuroinformatics
+ Volume: 7
+ Number: 1
+ Pages: 37--53
+ Year: 2009
+ URL: http://dx.doi.org/10.1007/s12021-008-9041-y
+ DOI: 10.1007/s12021-008-9041-y
+ PMID: 19184561
Modified: packages-metadata/s/seqan.upstream
===================================================================
--- packages-metadata/s/seqan.upstream 2012-04-25 09:08:49 UTC (rev 2243)
+++ packages-metadata/s/seqan.upstream 2012-04-26 03:00:30 UTC (rev 2244)
@@ -1,9 +1,7 @@
Contact: SeqAn Team (http://www.seqan.de/contact-us.html)
-Reference-DOI: 10.1186/1471-2105-9-11
Donate: http://www.seqan.de/
Homepage: http://www.seqan.de/
Name: SeqAn
-Reference-PMID: 18184432
Reference:
AUTHOR: Doring, Andreas and Weese, David and Rausch, Tobias and Reinert, Knut
TITLE: SeqAn An efficient, generic C++ library for sequence analysis
@@ -12,7 +10,10 @@
YEAR: 2008
NUMBER: 1
PAGES: 11
+ DOI: 10.1186/1471-2105-9-11
+ PMID: 18184432
URL: http://www.biomedcentral.com/1471-2105/9/11
+ eprint: http://www.biomedcentral.com/content/pdf/1471-2105-9-11.pdf
ISSN: 1471-2105
Watch: |
http://www.seqan.de/downloads/releases.html \
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