[Collab-qa-commits] r2586 - in packages-metadata: b c e f g i l m n o p r s v w z

Charles Plessy plessy at alioth.debian.org
Wed Dec 19 04:02:14 UTC 2012 

Author: plessy
Date: 2012-12-19 04:02:14 +0000 (Wed, 19 Dec 2012)
New Revision: 2586

Added:
   packages-metadata/b/brian.upstream
   packages-metadata/g/geoip-database-contrib.control
   packages-metadata/r/refdb-perlmod.control
   packages-metadata/r/refdb-perlmod.copyright
   packages-metadata/r/refdb-sru.control
   packages-metadata/r/refdb-sru.copyright
Modified:
   packages-metadata/b/beast-mcmc.control
   packages-metadata/b/brian.control
   packages-metadata/b/brian.copyright
   packages-metadata/c/cpl.control
   packages-metadata/e/esorex.control
   packages-metadata/f/figtree.control
   packages-metadata/f/funtools.control
   packages-metadata/g/gbrowse.control
   packages-metadata/i/iausofa-c.control
   packages-metadata/i/igv.copyright
   packages-metadata/l/libbio-graphics-perl.control
   packages-metadata/l/libhmsbeagle.control
   packages-metadata/m/mediawiki.control
   packages-metadata/m/monit.control
   packages-metadata/n/nwchem.control
   packages-metadata/o/orthanc.copyright
   packages-metadata/p/python-cpl.control
   packages-metadata/p/python-numpy.control
   packages-metadata/p/python-pywcs.control
   packages-metadata/s/saods9.control
   packages-metadata/s/sextractor.control
   packages-metadata/s/starlink-ast.control
   packages-metadata/s/starlink-pal.control
   packages-metadata/v/vlc.control
   packages-metadata/w/wcslib.control
   packages-metadata/w/wcstools.control
   packages-metadata/z/zabbix.control
Log:
Daily automatic umegaya push

Modified: packages-metadata/b/beast-mcmc.control
===================================================================
--- packages-metadata/b/beast-mcmc.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/b/beast-mcmc.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -5,12 +5,12 @@
 DM-Upload-Allowed: yes
 Uploaders: Andreas Tille <tille at debian.org>
 Build-Depends: debhelper (>= 9), javahelper (>=0.25),
- ant, ant-optional, openjdk-6-jdk, default-jdk,
- libjebl2-java, libjam-java, figtree, liboptions-java, libhmsbeagle-java,
+ ant, ant-optional, default-jdk,
+ libjebl2-java, libjam-java, figtree, liboptions-java, libhmsbeagle-java (>= 1.1r1092),
  libcolt-java, libmpj-java, r-cran-rjava, libcommons-math-java (>= 2.2),
  libjdom1-java, junit4, libmtj-java, libitext1-java, texlive-latex-base,
  texlive-latex-extra
-Standards-Version: 3.9.3
+Standards-Version: 3.9.4
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/beast-mcmc/trunk/
 Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/beast-mcmc/trunk/
 XS-Autobuild: yes
@@ -18,8 +18,9 @@
 
 Package: beast-mcmc
 Architecture: all
-Depends: ${shlibs:Depends}, ${misc:Depends}, ${java:Depends}, openjdk-6-jre | java-jre,
- beast-mcmc-lib, xterm | x-terminal-emulator
+Depends: ${shlibs:Depends}, ${misc:Depends}, libhmsbeagle-java (>= 1.1r1092),
+ ${java:Depends}, default-jre | java6-runtime,
+ libnucleotidelikelihoodcore0 (>= ${source:Version})
 Suggests: beast-mcmc-doc
 Description: Bayesian MCMC phylogenetic inference
  BEAST is a cross-platform program for Bayesian MCMC analysis of molecular 
@@ -32,11 +33,14 @@
  is a simple to use user-interface program for setting up standard 
  analyses and a suit of programs for analysing the results.
 
-Package: beast-mcmc-lib
+Package: libnucleotidelikelihoodcore0
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Suggests: beast-mcmc-doc
-Description: Bayesian MCMC phylogenetic inference
+Replaces: beast-mcmc-lib
+Conflicts: beast-mcmc-lib
+Provides: beast-mcmc-lib
+Section: contrib/libs
+Description: implementation of LikelihoodCore for nucleotides used by beast-mcmc
  BEAST is a cross-platform program for Bayesian MCMC analysis of molecular 
  sequences. It is entirely orientated towards rooted, time-measured 
  phylogenies inferred using strict or relaxed molecular clock models. It
@@ -47,7 +51,8 @@
  is a simple to use user-interface program for setting up standard 
  analyses and a suit of programs for analysing the results.
  .
- This package contains an architecture dependent library.
+ This package an implementation of LikelihoodCore for nucleotides that calls
+ native methods for maximum speed.
 
 Package: beast-mcmc-examples
 Architecture: all

Modified: packages-metadata/b/brian.control
===================================================================
--- packages-metadata/b/brian.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/b/brian.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -10,11 +10,10 @@
          python-sympy,
          python-nose,
          python-sphinx, graphviz, texlive-latex-base, texlive-latex-extra, dvipng
-Standards-Version: 3.9.2
+Standards-Version: 3.9.3
 Homepage: http://www.briansimulator.org/
 Vcs-Browser: http://git.debian.org/?p=pkg-exppsy/brian.git
 Vcs-Git: git://git.debian.org/git/pkg-exppsy/brian.git
-XS-DM-Upload-Allowed: yes
 
 Package: python-brian
 Architecture: all

Modified: packages-metadata/b/brian.copyright
===================================================================
--- packages-metadata/b/brian.copyright	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/b/brian.copyright	2012-12-19 04:02:14 UTC (rev 2586)
@@ -1,15 +1,10 @@
-Format-Specification: http://svn.debian.org/wsvn/dep/web/deps/dep5.mdwn?op=file&rev=135
-Name: brian
-Maintainer: brian-development at googlegroups.com
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: brian
+Upstream-Contact: brian-development at googlegroups.com
 Source: https://neuralensemble.org/svn/brian
-X-References:
- (1) Goodman DF and Brette R (2008) Brian: a simulator for spiking neural networks in Python.
-     Front. Neuroinform. doi:10.3389/neuro.11.005.2008
- (2) Goodman DF and Brette R (2009). The Brian simulator.
-     Front Neurosci doi:10.3389/neuro.01.026.2009.
 
 Files: *
-Copyright: ENS, INRIA, CNRS
+Copyright: 2012, ENS, INRIA, CNRS
 X-Authors: Romain Brette <brette at di.ens.fr>, Dan Goodman <goodman at di.ens.fr>
 License: CeCILL-2
   This software is governed by the CeCILL license under French law and
@@ -93,7 +88,7 @@
 Comment: HTML dumps from http://code.google.com/p/numexpr/
 
 Files: debian/*
-Copyright: 2010, Yaroslav Halchenko <debian at onerussian.com>
+Copyright: 2010-2012, Yaroslav Halchenko <debian at onerussian.com>
 License: GPL-3
  This program is free software: you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
@@ -112,6 +107,25 @@
  can be found in `/usr/share/common-licenses/GPL-3'.
 
 
+License: Expat
+ Permission is hereby granted, free of charge, to any person obtaining a copy
+ of this software and associated documentation files (the "Software"), to deal
+ in the Software without restriction, including without limitation the rights
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+ copies of the Software, and to permit persons to whom the Software is
+ furnished to do so, subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included in
+ all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+ THE SOFTWARE.
+
 License: CeCILL-2 (Full)
   FREE SOFTWARE LICENSE AGREEMENT
   .

Added: packages-metadata/b/brian.upstream
===================================================================
--- packages-metadata/b/brian.upstream	                        (rev 0)
+++ packages-metadata/b/brian.upstream	2012-12-19 04:02:14 UTC (rev 2586)
@@ -0,0 +1,19 @@
+Reference:
+ - Author: D.F. Goodman and R. Brette
+   Title: Brian: A Simulator for Spiking Neural Networks in Python
+   Journal: Frontiers in Neuroinformatics
+   Year: 2008
+   Volume: 2
+   Number: 5
+   DOI: 10.3389/neuro.11.005.2008
+   PMID: PMC2605403
+   eprint: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2605403/pdf/fninf-02-005.pdf
+ - Author: D.F. Goodman and R. Brette
+   Title: The Brian simulator
+   Journal: Frontiers in Neuroinformatics
+   Year: 2009
+   Volume: 3
+   Number: 2
+   DOI: 10.3389/neuro.01.026.2009
+   PMID: PMC2751620
+   eprint: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2751620/pdf/fnins-03-192.pdf

Modified: packages-metadata/c/cpl.control
===================================================================
--- packages-metadata/c/cpl.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/c/cpl.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -3,7 +3,6 @@
 Section: science
 Maintainer: Debian Science Maintainers <debian-science-maintainers at lists.alioth.debian.org>
 Uploaders: Ole Streicher <debian at liska.ath.cx>
-DM-Upload-Allowed: yes
 Build-Depends: debhelper (>= 9),
                default-jdk,
                dh-autoreconf,

Modified: packages-metadata/e/esorex.control
===================================================================
--- packages-metadata/e/esorex.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/e/esorex.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -3,7 +3,6 @@
 Priority: optional
 Maintainer: Debian Science Maintainers <debian-science-maintainers at lists.alioth.debian.org>
 Uploaders: Ole Streicher <debian at liska.ath.cx>
-DM-Upload-Allowed: yes
 Build-Depends: debhelper (>= 7.0.50),
                dh-autoreconf,
                help2man,

Modified: packages-metadata/f/figtree.control
===================================================================
--- packages-metadata/f/figtree.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/f/figtree.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -10,7 +10,7 @@
  libfreehep-graphicsio-pdf-java, libfreehep-graphicsio-ps-java,
  libfreehep-graphicsio-swf-java, libfreehep-graphicsio-svg-java,
  libfreehep-graphicsio-emf-java, libitext5-java
-Standards-Version: 3.9.3
+Standards-Version: 3.9.4
 Homepage: http://tree.bio.ed.ac.uk/software/figtree/
 Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/figtree/trunk
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/figtree/trunk/

Modified: packages-metadata/f/funtools.control
===================================================================
--- packages-metadata/f/funtools.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/f/funtools.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -3,7 +3,6 @@
 Priority: extra
 Maintainer: Debian Science Maintainers <debian-science-maintainers at lists.alioth.debian.org>
 Uploaders: Ole Streicher <debian at liska.ath.cx>
-DM-Upload-Allowed: yes
 Build-Depends: autotools-dev,
                debhelper (>= 7.5.0),
                dh-autoreconf,

Modified: packages-metadata/g/gbrowse.control
===================================================================
--- packages-metadata/g/gbrowse.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/g/gbrowse.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -2,7 +2,7 @@
 Section: science
 Priority: optional
 Build-Depends: bioperl (>= 1.6.901), debhelper (>= 8),
- libbio-graphics-perl (>= 2.28), libcapture-tiny-perl, libcgi-session-perl (>= 4.02),
+ libbio-graphics-perl (>= 2.31), libcapture-tiny-perl, libcgi-session-perl (>= 4.02),
  libgd-gd2-perl (>= 2.07) | libgd-gd2-noxpm-perl (>= 2.07), libio-string-perl,
  libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, perl,
  perl (>= 5.10.0) | libextutils-cbuilder-perl, sqlite3,libdbd-sqlite3-perl, libterm-readkey-perl, libjs-prototype (>=1.7), libjs-scriptaculous (>= 1.9),
@@ -19,7 +19,7 @@
 Package: gbrowse
 Architecture: all
 Depends: ${misc:Depends}, ${perl:Depends},
- bioperl (>= 1.6.901), libbio-graphics-perl (>= 2.28),
+ bioperl (>= 1.6.901), libbio-graphics-perl (>= 2.31),
  libcgi-session-perl (>= 4.02),
  libgd-gd2-noxpm-perl (>= 2.07) | libgd-gd2-perl (>= 2.07), libio-string-perl,
  libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, perl,

Added: packages-metadata/g/geoip-database-contrib.control
===================================================================
--- packages-metadata/g/geoip-database-contrib.control	                        (rev 0)
+++ packages-metadata/g/geoip-database-contrib.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -0,0 +1,36 @@
+Source: geoip-database-contrib
+Section: contrib/net
+Priority: optional
+Maintainer: Ludovico Cavedon <cavedon at debian.org>
+Uploaders: Patrick Matthäi <pmatthaei at debian.org>
+Build-Depends: debhelper (>= 7.0.50~)
+Standards-Version: 3.9.4
+Homepage: http://www.maxmind.com/app/ip-location
+Vcs-Git: git://git.debian.org/collab-maint/geoip-database-contrib.git
+Vcs-Browser: http://git.debian.org/?p=collab-maint/geoip-database-contrib.git
+
+Package: geoip-database-contrib
+Architecture: all
+Pre-Depends: dpkg (>= 1.15.6~)
+Depends: wget,
+ ucf (>= 0.28),
+ ${misc:Depends}
+Suggests: cron
+Provides: geoip-database
+Replaces: geoip-database
+Conflicts: geoip-database
+Description: GeoLite binary database (downloader)
+ GeoIP is a C library that enables the user to find the country that any IP
+ address or hostname originates from. It uses a file-based database.
+ .
+ This package contains a script that downloads the latest version of the binary
+ flavor of the four MaxMind GeoLite databases (Country, IPv6 Country, City, and
+ ASN).
+ .
+ These databases simply contain IP blocks as keys, and countries/cities/ASNs as
+ values, which should be more complete and accurate than using reverse DNS
+ lookups.
+ .
+ The MaxMind database itself is made available under a BSD-like license.
+ However, it is distributed directly in binary format and the source code for
+ generating it is not provided.

Modified: packages-metadata/i/iausofa-c.control
===================================================================
--- packages-metadata/i/iausofa-c.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/i/iausofa-c.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -3,7 +3,6 @@
 Priority: extra
 Maintainer: Debian Science Maintainers <debian-science-maintainers at lists.alioth.debian.org>
 Uploaders: Ole Streicher <debian at liska.ath.cx>
-DM-Upload-Allowed: yes
 Build-Depends: debhelper (>= 9)
 Standards-Version: 3.9.3
 Homepage: http://www.iausofa.org/index.html

Modified: packages-metadata/i/igv.copyright
===================================================================
--- packages-metadata/i/igv.copyright	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/i/igv.copyright	2012-12-19 04:02:14 UTC (rev 2586)
@@ -1,5 +1,5 @@
-Format: http://dep.debian.net/deps/dep5/
-Source: http://www.broadinstitute.org/igvdata/downloads/IGVDistribution_1.5.64.zip
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Source: http://www.broadinstitute.org/igv/projects/downloads
 Comment: Original upstream source was repacked, see debian/rules.
 Disclamer: This package is not part of the Debian operating system.
  The igv source and binary Debian packages are part of the “non-free” area in
@@ -680,3 +680,4 @@
  Permission to use, copy, modify, and/or distribute this software for any
  purpose with or without fee is hereby granted, provided that the above
  copyright notice and this permission notice appear in all copies.
+

Modified: packages-metadata/l/libbio-graphics-perl.control
===================================================================
--- packages-metadata/l/libbio-graphics-perl.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/l/libbio-graphics-perl.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -1,6 +1,7 @@
 Source: libbio-graphics-perl
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Charles Plessy <plessy at debian.org>
+Uploaders: Charles Plessy <plessy at debian.org>,
+           Olivier Sallou <osallou at debian.org>
 Section: perl
 Priority: optional
 Build-Depends: debhelper (>= 8),

Modified: packages-metadata/l/libhmsbeagle.control
===================================================================
--- packages-metadata/l/libhmsbeagle.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/l/libhmsbeagle.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -1,11 +1,12 @@
 Source: libhmsbeagle
-Priority: extra
+Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 DM-Upload-Allowed: yes
 Uploaders: Tim Booth <tbooth at ceh.ac.uk>,
  Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 8), autotools-dev, dh-autoreconf,
- doxygen, javahelper (>=0.25), openjdk-6-jdk, ant
+Build-Depends: debhelper (>= 9), autotools-dev, dh-autoreconf,
+ doxygen, javahelper (>=0.25), default-jdk (>= 1:1.6), ant,
+ dh-linktree, libjs-jquery
 Standards-Version: 3.9.3
 Section: libs
 Homepage: http://code.google.com/p/beagle-lib
@@ -16,7 +17,7 @@
 Section: libdevel
 Architecture: linux-any
 Depends: libhmsbeagle1 (= ${binary:Version}), ${shlibs:Depends}, ${misc:Depends}
-Description: High-performance lib for Bayesian and Maximum Likelihood phylogenetics
+Description: High-performance lib for Bayesian and Maximum Likelihood phylogenetics (devel)
  BEAGLE is a high-performance library that can perform the core calculations at
  the heart of most Bayesian and Maximum Likelihood phylogenetics packages. It
  can make use of highly-parallel processors such as those in graphics cards
@@ -34,8 +35,8 @@
  This package contains development files needed to build against Beagle library.
 
 Package: libhmsbeagle1
-Section: libs
 Architecture: linux-any
+Pre-Depends: ${misc:Pre-Depends}
 Depends: ${shlibs:Depends}, ${misc:Depends}
 Description: High-performance lib for Bayesian and Maximum Likelihood phylogenetics
  BEAGLE is a high-performance library that can perform the core calculations at
@@ -57,7 +58,7 @@
 Section: java
 Depends: ${java:Depends}, ${misc:Depends}, ${shlibs:Depends}
 Recommends: ${java:Recommends}
-Description: High-performance lib for Bayesian and Maximum Likelihood phylogenetics
+Description: High-performance lib for Bayesian and Maximum Likelihood phylogenetics (java)
  BEAGLE is a high-performance library that can perform the core calculations at
  the heart of most Bayesian and Maximum Likelihood phylogenetics packages. It
  can make use of highly-parallel processors such as those in graphics cards

Modified: packages-metadata/m/mediawiki.control
===================================================================
--- packages-metadata/m/mediawiki.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/m/mediawiki.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -13,7 +13,7 @@
 
 Package: mediawiki
 Architecture: all
-Depends: apache2 | httpd, php5, php5-mysql | php5-pgsql | php5-sqlite, mime-support, libjs-jquery, libjs-jquery-tipsy, libjs-jquery-cookie, libjs-jquery-form, ${misc:Depends}
+Depends: apache2 | httpd, php5, php5-mysql | php5-pgsql | php5-sqlite | php5-mysqlnd, mime-support, libjs-jquery, libjs-jquery-tipsy, libjs-jquery-cookie, libjs-jquery-form, ${misc:Depends}
 Recommends: mysql-server | postgresql-contrib, php5-cli, python, php-wikidiff2,  mediawiki-extensions-base
 Suggests: imagemagick | php5-gd, mediawiki-math, memcached, clamav
 Breaks: fusionforge-plugin-mediawiki (<< 5.2~rc1+1~),

Modified: packages-metadata/m/monit.control
===================================================================
--- packages-metadata/m/monit.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/m/monit.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 Build-Depends: debhelper (>= 9), libssl-dev, libpam-dev, libkvm-dev [kfreebsd-any]
 # this strange things was installed only on ia64 buildd:
-Build-Conflicts: automake
+Build-Conflicts: automake, autoconf
 Standards-Version: 3.9.3
 Homepage: http://mmonit.com/monit/
 Vcs-Git: git://git.debian.org/git/collab-maint/monit.git

Modified: packages-metadata/n/nwchem.control
===================================================================
--- packages-metadata/n/nwchem.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/n/nwchem.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -4,16 +4,14 @@
 Maintainer: Debichem Team <debichem-devel at lists.alioth.debian.org>
 Uploaders: Michael Banck <mbanck at debian.org>
 Build-Depends: csh,
+               openssh-client,
                debhelper (>= 7.0.50~),
                gfortran,
                libblacs-mpi-dev,
                mpi-default-bin,
                mpi-default-dev,
-               openssh-client,
-               python-dev,
-               texlive
-X-Python-Version: current
-Standards-Version: 3.9.3
+               texlive-latex-recommended
+Standards-Version: 3.9.2
 Homepage: http://www.nwchem-sw.org
 Vcs-Browser: http://svn.debian.org/wsvn/debichem/unstable/nwchem/
 Vcs-Svn: svn://svn.debian.org/svn/debichem/unstable/nwchem/
@@ -54,7 +52,7 @@
      reference
    - Complete active space SCF (CASSCF)
   * Molecular electronic structure methods, single-point energies:
-   - MP2 with resolution of the identity integral approximation (RI-MP2), using
+   - MP2 with resolution of the identity integral approximation (RI-MP2), using 
      RHF and UHF reference
    - Coupled cluster singles and doubles, triples or pertubative triples (CCSD,
      CCSDT, CCSD(T)), with RHF and UHF reference
@@ -64,7 +62,7 @@
    - Geometry optimization including transition state searches, constraints
      and minimum energy paths
    - Vibrational frequencies
-   - Equation-of-motion (EOM)-CCSD, EOM-CCSDT, EOM-CCSD(T), CC2,
+   - Equation-of-motion (EOM)-CCSD, EOM-CCSDT, EOM-CCSD(T), CC2, 
      Configuration-Interaction singles (CIS), time-dependent HF (TDHF) and
      TDDFT, for excited states with RHF, UHF, RDFT, or UDFT reference
    - Solvatisation using the Conductor-like screening model (COSMO) for RHF,
@@ -93,7 +91,7 @@
    - Geometry constraints in cartesian coordinates
   * Classical molecular dynamics:
    - Single configuration energy evaluation
-   - Energy minimization
+   - Energy minimization 
    - Molecular dynamics simulation
    - Free energy simulation (multistep thermodynamic perturbation (MSTP) or
      multiconfiguration thermodynamic integration (MCTI) methods with options of

Modified: packages-metadata/o/orthanc.copyright
===================================================================
--- packages-metadata/o/orthanc.copyright	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/o/orthanc.copyright	2012-12-19 04:02:14 UTC (rev 2586)
@@ -7,7 +7,7 @@
 Copyright: 2012 CHU of Liege (Belgium) and Sebastien Jodogne <s.jodogne at gmail.com>
 License: GPL-3 with OpenSSL exception
 
-Files: * UnitTests/* Core/Compression/ZipWriter.* Resources/EmbedResources.py
+Files: * UnitTests/* Core/Compression/ZipWriter.* Resources/EmbedResources.py Resources/Samples/ImportDicomFiles/ImportDicomFiles.py Resources/Archives/*
 Copyright: 2012 CHU of Liege (Belgium) and Sebastien Jodogne <s.jodogne at gmail.com>
 License: GPL-3 with OpenSSL exception
 
@@ -75,7 +75,11 @@
 Copyright:  1999, 2002 Aladdin Enterprises
 License: zlib
 
+Files: Resources/sha1/*
+Copyright:  1998, 2009 Paul E. Jones <paulej at packetizer.com>
+License: FPL
 
+
 License: GPL-3 with OpenSSL exception
  This program is free software: you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
@@ -191,3 +195,16 @@
  .
  3. This notice may not be removed or altered from any source
  distribution.
+
+License: FPL
+ Freeware Public License (FPL)
+ .
+ This software is licensed as "freeware."  Permission to distribute
+ this software in source and binary forms, including incorporation 
+ into other products, is hereby granted without a fee.  THIS SOFTWARE 
+ IS PROVIDED 'AS IS' AND WITHOUT ANY EXPRESSED OR IMPLIED WARRANTIES, 
+ INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY 
+ AND FITNESS FOR A PARTICULAR PURPOSE.  THE AUTHOR SHALL NOT BE HELD 
+ LIABLE FOR ANY DAMAGES RESULTING FROM THE USE OF THIS SOFTWARE, EITHER 
+ DIRECTLY OR INDIRECTLY, INCLUDING, BUT NOT LIMITED TO, LOSS OF DATA 
+ OR DATA BEING RENDERED INACCURATE.

Modified: packages-metadata/p/python-cpl.control
===================================================================
--- packages-metadata/p/python-cpl.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/p/python-cpl.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -3,7 +3,6 @@
 Priority: optional
 Maintainer: Debian Science Maintainers <debian-science-maintainers at lists.alioth.debian.org>
 Uploaders: Ole Streicher <debian at liska.ath.cx>
-DM-Upload-Allowed: yes
 Build-Depends: debhelper (>= 7.0.50~),
                dh-autoreconf,
                libcpl-dev,

Modified: packages-metadata/p/python-numpy.control
===================================================================
--- packages-metadata/p/python-numpy.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/p/python-numpy.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -9,7 +9,7 @@
 Standards-Version: 3.9.3
 Vcs-Svn: svn://svn.debian.org/python-modules/packages/numpy/trunk
 Vcs-Browser: http://svn.debian.org/viewsvn/python-modules/packages/numpy/trunk/
-Homepage: http://numpy.scipy.org/
+Homepage: http://www.numpy.org/
 
 Package: python-numpy
 Architecture: any

Modified: packages-metadata/p/python-pywcs.control
===================================================================
--- packages-metadata/p/python-pywcs.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/p/python-pywcs.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -3,7 +3,6 @@
 Priority: optional
 Maintainer: Debian Science Maintainers <debian-science-maintainers at lists.alioth.debian.org>
 Uploaders: Ole Streicher <debian at liska.ath.cx>
-DM-Upload-Allowed: yes
 Build-Depends: python-all-dev (>= 2.6.6-3~), debhelper (>= 7.0.50~), 
  python-support, python-nose, wcslib-dev (>= 4.7), python-pyfits, python-numpy
 XS-Python-Version: >= 2.6

Added: packages-metadata/r/refdb-perlmod.control
===================================================================
--- packages-metadata/r/refdb-perlmod.control	                        (rev 0)
+++ packages-metadata/r/refdb-perlmod.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -0,0 +1,19 @@
+Source: refdb-perlmod
+Section: perl
+Priority: optional
+Build-Depends: debhelper (>= 9), libtext-iconv-perl
+Maintainer: Mathieu Malaterre <malat at debian.org>
+Standards-Version: 3.9.3
+Homepage: http://refdb.sf.net
+Vcs-Svn: svn://svn.debian.org/collab-maint/deb-maint/refdb-perlmod/trunk
+Vcs-Browser: http://anonscm.debian.org/viewvc/collab-maint/deb-maint/refdb-perlmod/trunk/
+
+Package: librefdb-perlmod-perl
+Architecture: all
+Depends: ${perl:Depends}, ${misc:Depends}, libtext-iconv-perl
+Description: RefDB-perlmod module for perl
+ Perl component for the MARC and Pubmed import filters.
+ .
+ RefDB::Pubmed allows one to convert Pubmed/Medline bibliographic data to the
+ RIS format understood by RefDB and most other bibliographic software. Data can
+ be provided as a string or they can be read from a file/stream.

Added: packages-metadata/r/refdb-perlmod.copyright
===================================================================
--- packages-metadata/r/refdb-perlmod.copyright	                        (rev 0)
+++ packages-metadata/r/refdb-perlmod.copyright	2012-12-19 04:02:14 UTC (rev 2586)
@@ -0,0 +1,30 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: refdb-perlmod
+Upstream-Contact: Markus Hoenicka <markus at mhoenicka.de>
+Source: http://refdb.sf.net
+
+Files: *
+Copyright: 2003-2007 Markus Hoenicka <markus at mhoenicka.de>
+License: GPL-2+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
+ .
+ On Debian systems, the full text of the GNU General Public
+ License version 2 can be found in the file
+ `/usr/share/common-licenses/GPL-2'.
+
+Files: debian/*
+Copyright: 2012 Mathieu Malaterre <malat at debian.org>
+License: GPL-2+
+ Same as above

Added: packages-metadata/r/refdb-sru.control
===================================================================
--- packages-metadata/r/refdb-sru.control	                        (rev 0)
+++ packages-metadata/r/refdb-sru.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -0,0 +1,19 @@
+Source: refdb-sru
+Section: perl
+Priority: optional
+Build-Depends: debhelper (>= 9), libxml-writer-perl, libcql-parser-perl, librefdb-client-perl, librefdb-perlmod-perl
+Maintainer: Mathieu Malaterre <malat at debian.org>
+Standards-Version: 3.9.3
+Homepage: http://refdb.sf.net
+Vcs-Svn: svn://svn.debian.org/collab-maint/deb-maint/refdb-sru/trunk
+Vcs-Browser: http://anonscm.debian.org/viewvc/collab-maint/deb-maint/refdb-sru/trunk/
+
+Package: librefdb-sru-perl
+Architecture: all
+Depends: ${perl:Depends}, ${misc:Depends}, libxml-writer-perl, libcql-parser-perl, librefdb-client-perl, librefdb-perlmod-perl
+Description: RefDB-SRU module for perl
+ Module for a SRU service for RefDB
+ .
+ Implements the backend code of a SRU service to query RefDB databases. Your
+ own code must provide the networking interface which invokes the code in this
+ module

Added: packages-metadata/r/refdb-sru.copyright
===================================================================
--- packages-metadata/r/refdb-sru.copyright	                        (rev 0)
+++ packages-metadata/r/refdb-sru.copyright	2012-12-19 04:02:14 UTC (rev 2586)
@@ -0,0 +1,30 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: refdb-sru
+Upstream-Contact: Markus Hoenicka <markus at mhoenicka.de>
+Source: http://refdb.sf.net
+
+Files: *
+Copyright: 2003-2007 Markus Hoenicka <markus at mhoenicka.de>
+License: GPL-2+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
+ .
+ On Debian systems, the full text of the GNU General Public
+ License version 2 can be found in the file
+ `/usr/share/common-licenses/GPL-2'.
+
+Files: debian/*
+Copyright: 2012 Mathieu Malaterre <malat at debian.org>
+License: GPL-2+
+ Same as above

Modified: packages-metadata/s/saods9.control
===================================================================
--- packages-metadata/s/saods9.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/s/saods9.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -3,7 +3,6 @@
 Priority: extra
 Maintainer: Debian Science Maintainers <debian-science-maintainers at lists.alioth.debian.org>
 Uploaders: Ole Streicher <debian at liska.ath.cx>
-DM-Upload-Allowed: yes
 Build-Depends: autotools-dev,
                debhelper (>= 7.0.50),
                html2text,

Modified: packages-metadata/s/sextractor.control
===================================================================
--- packages-metadata/s/sextractor.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/s/sextractor.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -3,7 +3,6 @@
 Priority: optional
 Maintainer: Debian Science Maintainers <debian-science-maintainers at lists.alioth.debian.org>
 Uploaders: Ole Streicher <debian at liska.ath.cx>
-DM-Upload-Allowed: yes
 Build-Depends: debhelper (>= 7.0.50),
                dh-autoreconf,
                libatlas-base-dev,

Modified: packages-metadata/s/starlink-ast.control
===================================================================
--- packages-metadata/s/starlink-ast.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/s/starlink-ast.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -2,7 +2,6 @@
 Priority: extra
 Maintainer: Debian Science Maintainers <debian-science-maintainers at lists.alioth.debian.org>
 Uploaders: Ole Streicher <debian at liska.ath.cx>
-DM-Upload-Allowed: yes
 Build-Depends: autotools-dev,
                debhelper (>= 9),
                dh-autoreconf,

Modified: packages-metadata/s/starlink-pal.control
===================================================================
--- packages-metadata/s/starlink-pal.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/s/starlink-pal.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -3,7 +3,6 @@
 Priority: extra
 Maintainer: Debian Science Maintainers <debian-science-maintainers at lists.alioth.debian.org>
 Uploaders: Ole Streicher <debian at liska.ath.cx>
-DM-Upload-Allowed: yes
 Build-Depends: autotools-dev,
                debhelper (>= 9),
                dh-autoreconf,

Modified: packages-metadata/v/vlc.control
===================================================================
--- packages-metadata/v/vlc.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/v/vlc.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -117,10 +117,7 @@
 Section: libdevel
 Architecture: any
 Pre-Depends: dpkg (>= 1.15.6~)
-Depends: libvlc5 (= ${binary:Version}),
-         libvlccore-dev,
-         pkg-config,
-         ${misc:Depends}
+Depends: libvlc5 (= ${binary:Version}), pkg-config, ${misc:Depends}
 Replaces: libvlc0-dev
 Description: development files for libvlc
  This package contains headers and a static library required to build

Modified: packages-metadata/w/wcslib.control
===================================================================
--- packages-metadata/w/wcslib.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/w/wcslib.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -2,7 +2,6 @@
 Priority: optional
 Maintainer: Debian Science Maintainers <debian-science-maintainers at lists.alioth.debian.org>
 Uploaders: Ole Streicher <debian at liska.ath.cx>
-DM-Upload-Allowed: yes
 Build-Depends: autotools-dev,
                debhelper (>= 9),
                dh-autoreconf,

Modified: packages-metadata/w/wcstools.control
===================================================================
--- packages-metadata/w/wcstools.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/w/wcstools.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -3,7 +3,6 @@
 Priority: optional
 Maintainer: Debian Science Maintainers <debian-science-maintainers at lists.alioth.debian.org>
 Uploaders: Ole Streicher <debian at liska.ath.cx>
-DM-Upload-Allowed: yes
 Build-Depends: debhelper (>= 9), dh-exec (>= 0.1), help2man
 Standards-Version: 3.9.3
 Homepage: http://tdc-www.harvard.edu/software/wcstools/

Modified: packages-metadata/z/zabbix.control
===================================================================
--- packages-metadata/z/zabbix.control	2012-12-13 04:01:32 UTC (rev 2585)
+++ packages-metadata/z/zabbix.control	2012-12-19 04:02:14 UTC (rev 2586)
@@ -3,8 +3,7 @@
 Priority: optional
 Maintainer: Christoph Haas <haas at debian.org>
 Uploaders: Fabio Tranchitella <kobold at debian.org>, Michael Ablassmeier <abi at debian.org>, Dmitry Smirnov <onlyjob at member.fsf.org>
-DM-Upload-Allowed: yes
-Build-Depends: debhelper (>= 9), automake1.9, dh-autoreconf, po-debconf
+Build-Depends: debhelper (>= 9), automake1.9, dh-autoreconf
  ,libcurl4-gnutls-dev | libcurl3-gnutls-dev
  ,libgcrypt-dev
  ,libiksemel-dev
@@ -16,7 +15,7 @@
  ,libsnmp9-dev | libsnmp-dev
  ,libsqlite3-dev
  ,libssh2-1-dev (>= 1.0.0)
-Standards-Version: 3.9.3
+Standards-Version: 3.9.4
 Homepage: http://zabbix.com
 Vcs-Git: git://git.debian.org/git/collab-maint/zabbix.git
 Vcs-Browser: http://git.debian.org/?p=collab-maint/zabbix.git
@@ -62,7 +61,7 @@
 Depends: ${shlibs:Depends}, ${misc:Depends}, fping, adduser, lsb-base
 Recommends: mysql-server (>= 5.0)
 Suggests: logrotate
-Conflicts: zabbix-proxy-pgsql, zabbix-proxy-sqite3, zabbix-server-mysql, zabbix-server-pgsql, zabbix-server-sqlite3
+Conflicts: zabbix-proxy-pgsql, zabbix-proxy-sqlite3, zabbix-server-mysql, zabbix-server-pgsql, zabbix-server-sqlite3
 Description: network monitoring solution - proxy (using MySQL)
  Zabbix is a server/client network monitoring system with many features.
  It can be used for:
@@ -122,7 +121,6 @@
 Package: zabbix-server-mysql
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}, fping, adduser, lsb-base
-Pre-Depends: debconf
 Recommends: mysql-server (>= 5.0), snmpd
 Suggests: zabbix-frontend-php, logrotate
 Conflicts: zabbix-server-pgsql, zabbix-server-sqlite3, zabbix-proxy-mysql, zabbix-proxy-pgsql, zabbix-proxy-sqlite3
@@ -144,7 +142,6 @@
 Package: zabbix-server-pgsql
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}, fping, adduser, lsb-base
-Pre-Depends: debconf
 Recommends: postgresql, snmpd
 Suggests: zabbix-frontend-php, logrotate
 Conflicts: zabbix-server-mysql, zabbix-server-sqlite3, zabbix-proxy-mysql, zabbix-proxy-pgsql, zabbix-proxy-sqlite3
@@ -166,7 +163,6 @@
 #Package: zabbix-server-sqlite3
 #Architecture: any
 #Depends: ${shlibs:Depends}, ${misc:Depends}, fping, adduser, lsb-base
-#Pre-Depends: debconf
 #Recommends: snmpd
 #Suggests: logrotate
 #Conflicts: zabbix-server-mysql, zabbix-server-pgsql, zabbix-proxy-mysql, zabbix-proxy-pgsql, zabbix-proxy-sqlite3

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