[Collab-qa-commits] r2262 - in packages-metadata: m p

Sun May 6 03:00:32 UTC 2012

Author: plessy
Date: 2012-05-06 03:00:31 +0000 (Sun, 06 May 2012)
New Revision: 2262

Added:
   packages-metadata/m/muscle.upstream
   packages-metadata/p/psicode.upstream
Modified:
   packages-metadata/m/mipe.upstream
   packages-metadata/p/pixelmed.copyright
Log:
Daily automatic umegaya push

Modified: packages-metadata/m/mipe.upstream
===================================================================

--- packages-metadata/m/mipe.upstream	2012-05-05 16:22:07 UTC (rev 2261)
+++ packages-metadata/m/mipe.upstream	2012-05-06 03:00:31 UTC (rev 2262)
@@ -2,7 +2,7 @@
 Contact: Jan Aerts (aerts at users.sourceforge.net)
 Homepage: http://mipe.sourceforge.net
 Reference:
- Author: Aerts J & Veenendaal T.
+ Author: Jan Aerts and T. Veenendaal
  Title: MIPE - a XML-format to facilitate the storage and exchange of PCR-related data
  Journal: Online Journal of Bioinformatics
  Number: 2

Added: packages-metadata/m/muscle.upstream
===================================================================
--- packages-metadata/m/muscle.upstream	                        (rev 0)
+++ packages-metadata/m/muscle.upstream	2012-05-06 03:00:31 UTC (rev 2262)
@@ -0,0 +1,23 @@
+Reference:
+ - Author: Robert C. Edgar
+   Title: "MUSCLE: multiple sequence alignment with high accuracy and high throughput"
+   Journal: Nucleic Acids Research
+   Year: 2004
+   Volume: 32
+   Number: 5
+   Pages: 1792-1797
+   DOI: 10.1093/nar/gkh340
+   PMID: 15034147
+   URL: http://nar.oxfordjournals.org/content/32/5/1792
+   eprint: http://nar.oxfordjournals.org/content/32/5/1792.full.pdf+html
+ - Author: Robert C. Edgar
+   Title: "MUSCLE: a multiple sequence alignment method with reduced time and space complexity"
+   Journal: BMC Bioinformatics
+   Year: 2004
+   Volume: 19
+   Number: 5
+   Pages: 113
+   DOI: 10.1186/1471-2105-5-113
+   PMID: 15318951
+   URL: http://www.biomedcentral.com/1471-2105/5/113
+   eprint: http://www.biomedcentral.com/content/pdf/1471-2105-5-113.pdf

Modified: packages-metadata/p/pixelmed.copyright
===================================================================
--- packages-metadata/p/pixelmed.copyright	2012-05-05 16:22:07 UTC (rev 2261)
+++ packages-metadata/p/pixelmed.copyright	2012-05-06 03:00:31 UTC (rev 2262)
@@ -1,25 +1,24 @@
-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
-Debianized-By: Mathieu Malaterre <mathieu.malaterre at gmail.com>
-Debianized-Date: Sat, 21 Nov 2009 22:30:57 +0100
-Original-Source: http://www.pixelmed.com/
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: PixelMed Java DICOM Toolkit
+Upstream-Contact: pixelmed_dicom at yahoogroups.com
+Source: http://www.pixelmed.com/
 
 Files: *
-Copyright:
- Copyright (c) 2001-2008, David A. Clunie DBA PixelMed Publishing. All rights reserved.
-License:
+Copyright: 2001-2008, David A. Clunie DBA PixelMed Publishing. All rights reserved.
+License: BSD
  Redistribution and use in source and binary forms, with or without modification, are
  permitted provided that the following conditions are met:
- 
+ .
  1. Redistributions of source code must retain the above copyright notice, this list of
     conditions and the following disclaimers.
- 
+ .
  2. Redistributions in binary form must reproduce the above copyright notice, this list of
     conditions and the following disclaimers in the documentation and/or other materials
     provided with the distribution.
- 
+ .
  3. Neither the name of PixelMed Publishing nor the names of its contributors may
     be used to endorse or promote products derived from this software.
- 
+ .
  This software is provided by the copyright holders and contributors "as is" and any
  express or implied warranties, including, but not limited to, the implied warranties
  of merchantability and fitness for a particular purpose are disclaimed. In no event
@@ -29,14 +28,13 @@
  however caused and on any theory of liability, whether in contract, strict liability, or
  tort (including negligence or otherwise) arising in any way out of the use of this software,
  even if advised of the possibility of such damage.
- 
+ .
  This software has neither been tested nor approved for clinical use or for incorporation in
  a medical device. It is the redistributor's or user's responsibility to comply with any
  applicable local, state, national or international regulations.
 
 Files: debian/*
 Copyright:
- Copyright 2009, Mathieu Malaterre <mathieu.malaterre at gmail.com>
-License: GPL-2+
- The Debian packaging is licensed under the GPL-2 or any later version,
- see `/usr/share/common-licenses/GPL-2'
+ Copyright 2009-2012, Mathieu Malaterre <malat at debian.org>
+License: BSD
+ Same as above

Added: packages-metadata/p/psicode.upstream
===================================================================
--- packages-metadata/p/psicode.upstream	                        (rev 0)
+++ packages-metadata/p/psicode.upstream	2012-05-06 03:00:31 UTC (rev 2262)
@@ -0,0 +1,18 @@
+Name: PSI3
+Reference:
+ - Author: T. Daniel Crawford and C. David Sherrill and Edward F. Valeev and Justin T. Fermann and Rollin A. King and Matthew L. Leininger and Shawn T. Brown and Curtis L. Janssen and Edward T. Seidl and Joseph P. Kenny and Wesley D. Allen
+   Title: "PSI3: An open-source Ab Initio electronic structure package"
+   Journal: J. Comp. Chem.
+   Year: 2007
+   Volume: 28
+   Number: 9
+   Pages: 1610-1616
+   URL: http://onlinelibrary.wiley.com/doi/10.1002/jcc.20573/abstract
+   eprint: http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.108.5683&rep=rep1&type=pdf
+   DOI: 10.1002/jcc.20573
+ - Author: Justin M. Turney and Andrew C. Simmonett and Robert M. Parrish and Edward G. Hohenstein and Francesco A. Evangelista and Justin T. Fermann and Benjamin J. Mintz and Lori A. Burns and Jeremiah J. Wilke and Micah L. Abrams and Nicholas J. Russ and Matthew L. Leininger and Curtis L. Janssen and Edward T. Seidl and Wesley D. Allen and Henry F. Schaefer and Rollin A. King and Edward F. Valeev and C. David Sherrill and T. Daniel Crawford
+   Title: "Psi4: an open-source ab initio electronic structure program"
+   Journal: WIREs Comput. Mol. Sci.
+   Year: 2011
+   URL: http://onlinelibrary.wiley.com/doi/10.1002/wcms.93/abstract
+   DOI: 10.1002/wcms.93


