[Collab-qa-commits] r2486 - packages-metadata/s

[Charles Plessy]

Author: plessy
Date: 2012-09-19 03:01:12 +0000 (Wed, 19 Sep 2012)
New Revision: 2486

Added:
   packages-metadata/s/saint.control
   packages-metadata/s/saint.copyright
   packages-metadata/s/saint.upstream
Log:
Daily automatic umegaya push

Added: packages-metadata/s/saint.control
===================================================================
--- packages-metadata/s/saint.control	                        (rev 0)
+++ packages-metadata/s/saint.control	2012-09-19 03:01:12 UTC (rev 2486)
@@ -0,0 +1,26 @@
+Source: saint
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9), libgsl0-dev
+Standards-Version: 3.9.3
+Homepage: http://saint-apms.sourceforge.net/Main.html
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/saint/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/saint/trunk/
+
+Package: saint
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: Significance Analysis of INTeractome
+ SAINT implements the scoring algorithm for protein-protein interaction
+ data using label free quantitative proteomics data in AP-MS experiments.
+ It was used for spectral count data in the yeast kinase interactome work
+ not incorporating control purification, as well as a generalized
+ implementation for spectral count data with and without control
+ purification.
+ .
+ Alternatively, you can also run SAINT in combination with ProHits.
+ .
+ The package was written for either doing analysis without or with
+ control IPs and

Added: packages-metadata/s/saint.copyright
===================================================================
--- packages-metadata/s/saint.copyright	                        (rev 0)
+++ packages-metadata/s/saint.copyright	2012-09-19 03:01:12 UTC (rev 2486)
@@ -0,0 +1,40 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: SAINT
+Upstream-Contact: Hyung Won Choi <hyung_won_choi at nuhs.edu.sg>
+Source: https://sourceforge.net/projects/saint-apms/files/
+Files-Excluded:
+    __MACOSX/
+    .DS_Store
+    *~
+    *.pdf
+
+Files: *
+Copyright: © 2010-2012 Hyung Won Choi <hyung_won_choi at nuhs.edu.sg>
+License: GPL-3+
+
+Files: debian/*
+Copyright: © 2012 Andreas Tille <tille at debian.org>
+License: GPL-3+
+
+License: GPL-3+
+ This program is free software; you can redistribute it
+ and/or modify it under the terms of the GNU General Public
+ License as published by the Free Software Foundation; either
+ version 3 of the License, or (at your option) any later
+ version.
+ .
+ This program is distributed in the hope that it will be
+ useful, but WITHOUT ANY WARRANTY; without even the implied
+ warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE.  See the GNU General Public License for more
+ details.
+ .
+ You should have received a copy of the GNU General Public
+ License along with this package; if not, write to the Free
+ Software Foundation, Inc., 51 Franklin St, Fifth Floor,
+ Boston, MA  02110-1301 USA
+ .
+ On Debian systems, the full text of the GNU General Public
+ License version 3 can be found in the file
+ `/usr/share/common-licenses/GPL-3'.
+

Added: packages-metadata/s/saint.upstream
===================================================================
--- packages-metadata/s/saint.upstream	                        (rev 0)
+++ packages-metadata/s/saint.upstream	2012-09-19 03:01:12 UTC (rev 2486)
@@ -0,0 +1,22 @@
+Reference:
+  - Author: A. Breitkreutz and H. Choi and J.R. Sharom and L. Boucher and V. Neduva and B. Larsen and Z.Y. Lin and B.J. Breitkreutz and C. Stark and G. Liu and J. Ahn and D. Dewar-Darch and T. Reguly and X. Tang and R. Almeida and Z.S. Qin and T. Pawson and A.-C. Gingras and A.I. Nesvizhskii and M. Tyers
+    Title: A global protein kinase and phosphatase interaction network in yeast
+    Journal: Science
+    Year: 2010
+    Volume: 328
+    Number: 5981
+    Pages: 1043-6
+    DOI: 10.1126/science.1176495
+    PMID: 20489023
+    URL: http://www.mendeley.com/research/global-protein-kinase-phosphatase-interaction-network-yeast-49/
+    ISSN: 00368075
+  - Author: Hyungwon Choi and Brett Larsen and Zhen-Yuan Lin and Ashton Breitkreutz and Dattatreya Mellacheruvu and Damian Fermin and Zhaohui S Qin and Mike Tyers and Anne-Claude Gingras and Alexey I Nesvizhskii 
+    Title: "SAINT: probabilistic scoring of affinity purification–mass spectrometry data"
+    Journal: Nature Methods
+    Year: 2010
+    Volume: 8
+    Pages: 70–73
+    DOI: 10.1038/nmeth.1541
+    PMID: 21131968
+    URL: http://www.nature.com/nmeth/journal/v8/n1/abs/nmeth.1541.html
+    eprint: http://www.nature.com/nmeth/journal/v8/n1/full/nmeth.1541.html