[Collab-qa-commits] r2596 - packages-metadata/f

[Charles Plessy]

Author: plessy
Date: 2013-01-03 04:01:22 +0000 (Thu, 03 Jan 2013)
New Revision: 2596

Modified:
   packages-metadata/f/fsl.control
   packages-metadata/f/fsl.upstream
Log:
Daily automatic umegaya push

Modified: packages-metadata/f/fsl.control
===================================================================
--- packages-metadata/f/fsl.control	2013-01-01 04:01:20 UTC (rev 2595)
+++ packages-metadata/f/fsl.control	2013-01-03 04:01:22 UTC (rev 2596)
@@ -3,13 +3,22 @@
 Priority: optional
 Maintainer: NeuroDebian Team <team at neuro.debian.net>
 Uploaders: Michael Hanke <mih at debian.org>, Yaroslav Halchenko <debian at onerussian.com>
-Build-Depends: debhelper (>= 7), zlib1g-dev (>= 1.2.2),
- libboost-dev (>= 1.32.0), libpng12-dev (>= 1.2.8rel),
- libgd2-noxpm-dev (>= 2.0.33) | libgd2-xpm-dev (>= 2.0.33), libnewmat10-dev,
- libgdchart-gd2-noxpm-dev | libgdchart-gd2-xpm-dev,
- liboctave-dev | octave3.2-headers | octave3.0-headers, tcl8.4 (>=8.4.7),
- imagemagick, libnifti-dev (>> 1.1.0-1), libgiftiio-dev, mesa-common-dev,
- libexpat1-dev | libexpat-dev, libglu1-mesa-dev | libglu-dev
+Build-Depends: debhelper (>= 7),
+               zlib1g-dev (>= 1.2.2),
+               libboost-dev (>= 1.32.0),
+               libpng12-dev (>= 1.2.8rel),
+               libgd2-noxpm-dev (>= 2.0.33) | libgd2-xpm-dev (>= 2.0.33),
+               libnewmat10-dev,
+               libgdchart-gd2-noxpm-dev | libgdchart-gd2-xpm-dev,
+               liboctave-dev | octave3.2-headers | octave3.0-headers,
+               tcl8.4 (>=8.4.7),
+               imagemagick,
+               libnifti-dev (>> 1.1.0-1),
+               libgiftiio-dev,
+               mesa-common-dev,
+               libexpat1-dev | libexpat-dev,
+               libglu1-mesa-dev | libglu-dev,
+               libgomp1
 Standards-Version: 3.9.3
 Homepage: http://www.fmrib.ox.ac.uk/fsl/
 Vcs-Browser: http://git.debian.org/?p=pkg-exppsy/fsl.git
@@ -19,8 +28,9 @@
 
 Package: fsl
 Architecture: all
-Depends: ${misc:Depends}, fsl-5.0
-Description: Metapackage for the latest version of FSL
+Depends: ${misc:Depends},
+         fsl-5.0
+Description: metapackage for the latest version of FSL
  FSL is a comprehensive library of image analysis and statistical tools
  for fMRI, MRI and DTI brain imaging data. The suite consists of various
  command line tools, as well as simple GUIs for its core analysis pipelines.
@@ -30,11 +40,26 @@
 
 Package: fsl-5.0
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}, mozilla-firefox | www-browser,
- tcsh | c-shell, tk8.4 (>=8.4.7), tcl8.4 (>=8.4.7), bc, dc, python
-Recommends: fsl-doc-5.0 (= ${source:Version}), fsl-atlases, fslview
-Suggests: fsl-feeds, octave | ${octave:Depends}, dicomnifti, fsl-possum-data, fsl-first-data, gridengine-client
-Conflicts: fsl-fslview, fsl-doc-4.1 (<< 4.1.9-5~)
+Depends: ${shlibs:Depends},
+         ${misc:Depends},
+         mozilla-firefox | www-browser,
+         tcsh | c-shell,
+         tk8.4 (>=8.4.7),
+         tcl8.4 (>=8.4.7),
+         bc,
+         dc,
+         python
+Recommends: fsl-doc-5.0 (= ${source:Version}),
+            fsl-atlases,
+            fslview
+Suggests: fsl-feeds,
+          octave | ${octave:Depends},
+          dicomnifti,
+          fsl-possum-data,
+          fsl-first-data,
+          gridengine-client
+Conflicts: fsl-fslview,
+           fsl-doc-4.1 (<< 4.1.9-5~)
 Description: analysis tools for FMRI, MRI and DTI brain imaging
  FSL is a comprehensive library of image analysis and statistical tools
  for fMRI, MRI and DTI brain imaging data. The suite consists of various
@@ -43,6 +68,11 @@
  white matter tractography, tissue segmentation, affine and non-linear
  co-registration, and independent component analysis.
  .
+ Some FSL components require additional data packages (fsl-atlases,
+ fsl-first-data, fsl-possum-data) that are currently available from the
+ NeuroDebian repository only. For more information on how to obtain these
+ data packages visit http://neuro.debian.net.
+ .
  FSL interoperates well with other brain imaging related software. This includes
  Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support
  the NIfTI format.

Modified: packages-metadata/f/fsl.upstream
===================================================================
--- packages-metadata/f/fsl.upstream	2013-01-01 04:01:20 UTC (rev 2595)
+++ packages-metadata/f/fsl.upstream	2013-01-03 04:01:22 UTC (rev 2596)
@@ -1,5 +1,8 @@
+FAQ: http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FSL%20FAQ
+Contact: http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/Support
+Other-References: http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/
 Reference:
-  Author: Mark Jenkinson and Christian F. Beckmann and Timothy E. J. Behrens and Mark W. Woolrich and Stephen M. Smith
+- Author: Mark Jenkinson and Christian F. Beckmann and Timothy E. J. Behrens and Mark W. Woolrich and Stephen M. Smith
   Title: FSL
   Journal: NeuroImage
   Year: 2012
@@ -7,5 +10,25 @@
   Number: 2
   Pages: 782-790
   DOI: 10.1016/j.neuroimage.2011.09.015
+  PMID: 21979382
+- Author: M.W. Woolrich and S. Jbabdi and B. Patenaude and M. Chappell and S. Makni and T. Behrens and C. Beckmann and M. Jenkinson and S.M. Smith
+  Title: Bayesian analysis of neuroimaging data in FSL
+  Journal: NeuroImage
+  Volume: 45
+  Year: 2009
+  Pages: 73-86
+  PMID: 19059349
+- Author: S.M. Smith and M. Jenkinson and M.W. Woolrich and C.F. Beckmann and T.E.J. Behrens and H. Johansen-Berg and P.R. Bannister and M. De Luca and I. Drobnjak and D.E. Flitney and R. Niazy and J. Saunders and J. Vickers and Y. Zhang and N. De Stefano and J.M. Brady and P.M. Matthews
+  Title: Advances in functional and structural MR image analysis and implementation as FSL
+  Journal: NeuroImage
+  Volume: 23
+  Pages: 208-219
+  Year: 2004
+  PMID: 15501092
 Registration: http://www.fmrib.ox.ac.uk/fsldownloads/
-
+Tags:
+  - field::medicine:imaging
+  - field::neuroscience:imaging
+Also-Known-As:
+  NITRC: 25
+  NeuroLex: birnlex_2067