[Collab-qa-commits] r2648 - packages-metadata/s

Sun Mar 31 02:58:53 UTC 2013

Author: plessy
Date: 2013-03-31 02:58:53 +0000 (Sun, 31 Mar 2013)
New Revision: 2648

Modified:
   packages-metadata/s/samtools.control
   packages-metadata/s/samtools.copyright
   packages-metadata/s/samtools.upstream
Log:
Daily automatic umegaya push

Modified: packages-metadata/s/samtools.control
===================================================================

--- packages-metadata/s/samtools.control	2013-03-30 03:58:59 UTC (rev 2647)
+++ packages-metadata/s/samtools.control	2013-03-31 02:58:53 UTC (rev 2648)
@@ -1,18 +1,24 @@
 Source: samtools
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Charles Plessy <plessy at debian.org>,
+           Dominique Belhachemi <domibel at debian.org>
 Section: science
 Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-DM-Upload-Allowed: yes
-Uploaders: Charles Plessy <plessy at debian.org>, Dominique Belhachemi <domibel at debian.org>
-Build-Depends: debhelper (>= 9), bash-completion, cdbs, quilt, libncurses5-dev, zlib1g-dev
-Standards-Version: 3.9.2
+Build-Depends: debhelper (>= 9),
+               bash-completion,
+               cdbs,
+               quilt,
+               libncurses5-dev,
+               zlib1g-dev
+Standards-Version: 3.9.4
+Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/samtools.git
+Vcs-Git: git://anonscm.debian.org/debian-med/samtools.git
 Homepage: http://samtools.sourceforge.net
-Vcs-Browser: http://git.debian.org/?p=debian-med/samtools.git
-Vcs-Git: git://git.debian.org/debian-med/samtools.git
 
 Package: samtools
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
 Suggests: python
 Description: processing sequence alignments in SAM and BAM formats
  Samtools is a set of utilities that manipulate nucleotide sequence alignments
@@ -24,7 +30,8 @@
 Package: libbam-dev
 Architecture: any
 Section: libdevel
-Depends: ${shlibs:Depends}, ${misc:Depends}
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
 Description: manipulates nucleotide sequence alignments in BAM or SAM format 
  The BAM library provides I/O and various operations on manipulating nucleotide
  sequence alignments in the BAM (Binary Alignment/Mapping) or SAM (Sequence
@@ -33,3 +40,4 @@
  with a specified region.
  .
  This library is part of SAMtools.
+

Modified: packages-metadata/s/samtools.copyright
===================================================================
--- packages-metadata/s/samtools.copyright	2013-03-30 03:58:59 UTC (rev 2647)
+++ packages-metadata/s/samtools.copyright	2013-03-31 02:58:53 UTC (rev 2648)
@@ -1,44 +1,18 @@
 Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
-Source: http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2
+Source: https://github.com/samtools/samtools/archive/0.1.19.tar.gz
 
 Files: *
 Copyright: © 2008–2010, Genome Research Ltd. (GRL)
+           © 2003–2006, 2008–2011, by Heng Li <lh3lh3 at live.co.uk>
+           © 2010 Broad Institute
+           © 2008 Broad Institute / Massachusetts Institute of Technology
+           © 2008, 2009, 2011, 2012 Attractive Chaos <attractor at live.co.uk>
 License: MIT
 
-Files: kprobaln.h kprobaln.c
-Copyright: © 2003-2006, 2008-2010, by Heng Li <lh3lh3 at live.co.uk>
-License: MIT
-
-Files: bcftools/bcf.h
-Copyright: © 2010 Broad Institute
-License: MIT
-
 Files: misc/export2sam.pl bam_cat.c
 Copyright: © 2010 Illumina, Inc.
 License: MIT
 
-Files: bgzf.* bgzip.c
-Copyright: © 2008 Broad Institute / Massachusetts Institute of Technology
-License: MIT
-
-Files: khash.h kseq.h
-Copyright: © 2008, 2009, 2011 by Attractive Chaos <attractor at live.co.uk>
-License: MIT
-
-Files: bcftools/kmin.?
-Copyright: © 2008, 2010 by Attractive Chaos <attractor at live.co.uk>
-License: MIT
-
-Files: knetfile.c
-Copyright: © 2008 by Genome Research Ltd (GRL).
-           2010 by Attractive Chaos <attractor at live.co.uk>
-License: MIT
-
-Files: misc/wgsim.c
-Copyright: © 2008 Genome Research Ltd (GRL)
-           © 2011 Heng Li <lh3 at live.co.uk>
-License: MIT
-
 Files: razf.*
 Copyright: 2008, Jue Ruan <ruanjue at gmail.com>, Heng Li <lh3 at sanger.ac.uk>
 License: NetBSD-similar
@@ -82,13 +56,13 @@
  needed on buffers full of bytes, and then call MD5Final, which
  will fill a supplied 16-byte array with the digest.
 
-Files: win32/xcurses.h
+Files: win32/xcurses.h win32/libcurses.a
 Copyright: Public Domain
 License: public-domain
  This file is part of PDCurses (http://pdcurses.sourceforge.net/),
  which is in the public domain.
 
-Files: win32/z*.h 
+Files: win32/z*.h win32/libz.a
 Copyright: © 1995-2005 Jean-loup Gailly and Mark Adler
 License: zlib
  This software is provided 'as-is', without any express or implied

Modified: packages-metadata/s/samtools.upstream
===================================================================
--- packages-metadata/s/samtools.upstream	2013-03-30 03:58:59 UTC (rev 2647)
+++ packages-metadata/s/samtools.upstream	2013-03-31 02:58:53 UTC (rev 2648)
@@ -1,4 +1,5 @@
 Archive: SourceForge
+Changelog: https://raw.github.com/samtools/samtools/HEAD/NEWS
 Homepage: http://samtools.sourceforge.net
 mr:
   checkout: debcheckout -a git://git.debian.org/debian-med/samtools.git
@@ -15,4 +16,4 @@
  year: 2009
  URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btp352v1
  eprint: http://bioinformatics.oxfordjournals.org/cgi/reprint/btp352v1.pdf
-Repository: https://samtools.svn.sourceforge.net/svnroot/samtools
+Repository: https://github.com/samtools/samtools


