r35788 - in /packages/slicer/tags: ./ 3.4.0~svn10133-1/ 3.4.0~svn10133-1/patches/ 3.4.0~svn9703-1/ 3.4.0~svn9703-1/patches/
domibel-guest at users.alioth.debian.org
domibel-guest at users.alioth.debian.org
Mon Aug 10 00:09:18 UTC 2009
Author: domibel-guest
Date: Mon Aug 10 00:09:16 2009
New Revision: 35788
URL: http://svn.debian.org/wsvn/debian-science/?sc=1&rev=35788
Log:
tagging slicer 3.4.0~svn9703-1 and 3.4.0~svn10133-1
Added:
packages/slicer/tags/
packages/slicer/tags/3.4.0~svn10133-1/
packages/slicer/tags/3.4.0~svn10133-1/README.Debian
packages/slicer/tags/3.4.0~svn10133-1/changelog
packages/slicer/tags/3.4.0~svn10133-1/compat
packages/slicer/tags/3.4.0~svn10133-1/control
packages/slicer/tags/3.4.0~svn10133-1/copyright
packages/slicer/tags/3.4.0~svn10133-1/dirs
packages/slicer/tags/3.4.0~svn10133-1/docs
packages/slicer/tags/3.4.0~svn10133-1/get-orig-source
packages/slicer/tags/3.4.0~svn10133-1/libslicer3-dev.install
packages/slicer/tags/3.4.0~svn10133-1/libslicer3.install
packages/slicer/tags/3.4.0~svn10133-1/libslicer3.lintian-overrides
packages/slicer/tags/3.4.0~svn10133-1/menu
packages/slicer/tags/3.4.0~svn10133-1/patches/
packages/slicer/tags/3.4.0~svn10133-1/patches/00list
packages/slicer/tags/3.4.0~svn10133-1/patches/50_all_changes.dpatch
packages/slicer/tags/3.4.0~svn10133-1/rules (with props)
packages/slicer/tags/3.4.0~svn10133-1/shlibs.local
packages/slicer/tags/3.4.0~svn10133-1/slicer-data.install
packages/slicer/tags/3.4.0~svn10133-1/slicer.desktop
packages/slicer/tags/3.4.0~svn10133-1/slicer.install
packages/slicer/tags/3.4.0~svn10133-1/slicer3
packages/slicer/tags/3.4.0~svn10133-1/watch
packages/slicer/tags/3.4.0~svn9703-1/
packages/slicer/tags/3.4.0~svn9703-1/README.Debian
packages/slicer/tags/3.4.0~svn9703-1/changelog
packages/slicer/tags/3.4.0~svn9703-1/compat
packages/slicer/tags/3.4.0~svn9703-1/control
packages/slicer/tags/3.4.0~svn9703-1/copyright
packages/slicer/tags/3.4.0~svn9703-1/dirs
packages/slicer/tags/3.4.0~svn9703-1/docs
packages/slicer/tags/3.4.0~svn9703-1/get-orig-source
packages/slicer/tags/3.4.0~svn9703-1/libslicer3-dev.install
packages/slicer/tags/3.4.0~svn9703-1/libslicer3.install
packages/slicer/tags/3.4.0~svn9703-1/libslicer3.lintian-overrides
packages/slicer/tags/3.4.0~svn9703-1/menu
packages/slicer/tags/3.4.0~svn9703-1/patches/
packages/slicer/tags/3.4.0~svn9703-1/patches/00list
packages/slicer/tags/3.4.0~svn9703-1/patches/50_all_changes.dpatch
packages/slicer/tags/3.4.0~svn9703-1/rules (with props)
packages/slicer/tags/3.4.0~svn9703-1/shlibs.local
packages/slicer/tags/3.4.0~svn9703-1/slicer-data.install
packages/slicer/tags/3.4.0~svn9703-1/slicer.desktop
packages/slicer/tags/3.4.0~svn9703-1/slicer.install
packages/slicer/tags/3.4.0~svn9703-1/slicer3
packages/slicer/tags/3.4.0~svn9703-1/watch
Added: packages/slicer/tags/3.4.0~svn10133-1/README.Debian
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn10133-1/README.Debian?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn10133-1/README.Debian (added)
+++ packages/slicer/tags/3.4.0~svn10133-1/README.Debian Mon Aug 10 00:09:16 2009
@@ -1,0 +1,6 @@
+slicer for Debian
+-----------------
+
+This package does not use slicerlibcurl. Instead it uses curl from the Debian repositories.
+
+ -- Dominique Belhachemi <domibel at cs.tu-berlin.de> Sat, 22 Mar 2008 10:08:42 +0000
Added: packages/slicer/tags/3.4.0~svn10133-1/changelog
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn10133-1/changelog?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn10133-1/changelog (added)
+++ packages/slicer/tags/3.4.0~svn10133-1/changelog Mon Aug 10 00:09:16 2009
@@ -1,0 +1,12 @@
+slicer (3.4.0~svn10133-1) experimental; urgency=low
+
+ * Add libgdcm2-dev dependency
+ * Bump standard version to 3.8.2
+
+ -- Dominique Belhachemi <domibel at cs.tu-berlin.de> Thu, 06 Aug 2009 09:40:41 -0400
+
+slicer (3.4.0~svn9703-1) experimental; urgency=low
+
+ * Initial release (Closes: #500841)
+
+ -- Dominique Belhachemi <domibel at cs.tu-berlin.de> Fri, 12 Jun 2009 10:03:15 -0400
Added: packages/slicer/tags/3.4.0~svn10133-1/compat
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn10133-1/compat?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn10133-1/compat (added)
+++ packages/slicer/tags/3.4.0~svn10133-1/compat Mon Aug 10 00:09:16 2009
@@ -1,0 +1,1 @@
+7
Added: packages/slicer/tags/3.4.0~svn10133-1/control
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn10133-1/control?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn10133-1/control (added)
+++ packages/slicer/tags/3.4.0~svn10133-1/control Mon Aug 10 00:09:16 2009
@@ -1,0 +1,79 @@
+Source: slicer
+Priority: optional
+Maintainer: Debian Science Team <debian-science-maintainers at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Dominique Belhachemi <domibel at cs.tu-berlin.de>
+Build-Depends: debhelper (>= 7), dpatch, cmake, tcl8.4-dev, tk8.4-dev, libpng-dev, libjpeg-dev,
+ libtiff-dev, libexpat1-dev, libinsighttoolkit3-dev, libkwwidgets1-dev, libcurl4-openssl-dev,
+ libfreetype6-dev, libxext-dev, libvtk5-dev, libteem1-dev, libopenigtlink1-dev, chrpath,
+ uuid-dev, libbz2-dev, libxft-dev, libtclap-dev, libgdcm2-dev, libfftw3-dev, libopenjpeg-dev
+Build-Depends-Indep: doxygen, graphviz
+Standards-Version: 3.8.2
+Vcs-Browser: http://svn.debian.org/wsvn/debian-science/packages/slicer/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-science/packages/slicer/trunk/
+Section: graphics
+Homepage: http://www.slicer.org/
+
+
+Package: slicer
+Architecture: any
+Depends: libslicer3 (= ${binary:Version}), ${shlibs:Depends}, ${misc:Depends},
+ slicer-data, itcl3, iwidgets4, tcllib, tcl8.4-kwwidgets
+Description: software package for visualization and image analysis - main application
+ Slicer is an application for computer scientists and clinical researchers. The
+ platform provides functionality for segmentation, registration and
+ three-dimensional visualization of multi-modal image data, as well as advanced
+ image analysis algorithms for diffusion tensor imaging, functional magnetic
+ resonance imaging and image-guided therapy. Standard image file formats are
+ supported, and the application integrates interface capabilities to biomedical
+ research software and image informatics frameworks.
+ .
+ 3D Slicer main application.
+
+
+Package: libslicer3
+Section: libs
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: software package for visualization and image analysis - runtime
+ Slicer is an application for computer scientists and clinical researchers. The
+ platform provides functionality for segmentation, registration and
+ three-dimensional visualization of multi-modal image data, as well as advanced
+ image analysis algorithms for diffusion tensor imaging, functional magnetic
+ resonance imaging and image-guided therapy. Standard image file formats are
+ supported, and the application integrates interface capabilities to biomedical
+ research software and image informatics frameworks.
+ .
+ 3D Slicer libraries.
+
+
+Package: libslicer3-dev
+Section: libdevel
+Architecture: any
+Depends: libslicer3 (= ${binary:Version}), ${shlibs:Depends}, ${misc:Depends}
+Description: software package for visualization and image analysis - development
+ Slicer is an application for computer scientists and clinical researchers. The
+ platform provides functionality for segmentation, registration and
+ three-dimensional visualization of multi-modal image data, as well as advanced
+ image analysis algorithms for diffusion tensor imaging, functional magnetic
+ resonance imaging and image-guided therapy. Standard image file formats are
+ supported, and the application integrates interface capabilities to biomedical
+ research software and image informatics frameworks.
+ .
+ 3D Slicer development files.
+
+
+Package: slicer-data
+Section: doc
+Architecture: all
+Depends: ${misc:Depends}, tk8.4 | wish
+Description: software package for visualization and image analysis - share
+ Slicer is an application for computer scientists and clinical researchers. The
+ platform provides functionality for segmentation, registration and
+ three-dimensional visualization of multi-modal image data, as well as advanced
+ image analysis algorithms for diffusion tensor imaging, functional magnetic
+ resonance imaging and image-guided therapy. Standard image file formats are
+ supported, and the application integrates interface capabilities to biomedical
+ research software and image informatics frameworks.
+ .
+ 3D Slicer data files.
Added: packages/slicer/tags/3.4.0~svn10133-1/copyright
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn10133-1/copyright?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn10133-1/copyright (added)
+++ packages/slicer/tags/3.4.0~svn10133-1/copyright Mon Aug 10 00:09:16 2009
@@ -1,0 +1,717 @@
+Name: slicer
+Source: http://www.slicer.org/
+
+
+Files: *
+Copyright: 2009, Brigham and Women's Hospital (BWH)
+License: other (3D Slicer license)
+ The 3D Slicer license below is a BSD style license, with extensions
+ to cover contributions and other issues specific to 3D Slicer.
+ .
+ 3D Slicer Contribution and Software License Agreement ("Agreement")
+ Version 1.0 (December 20, 2005)
+ .
+ This Agreement covers contributions to and downloads from the 3D
+ Slicer project ("Slicer") maintained by The Brigham and Women's
+ Hospital, Inc. ("Brigham"). Part A of this Agreement applies to
+ contributions of software and/or data to Slicer (including making
+ revisions of or additions to code and/or data already in Slicer). Part
+ B of this Agreement applies to downloads of software and/or data from
+ Slicer. Part C of this Agreement applies to all transactions with
+ Slicer. If you distribute Software (as defined below) downloaded from
+ Slicer, all of the paragraphs of Part B of this Agreement must be
+ included with and apply to such Software.
+ .
+ Your contribution of software and/or data to Slicer (including prior
+ to the date of the first publication of this Agreement, each a
+ "Contribution") and/or downloading, copying, modifying, displaying,
+ distributing or use of any software and/or data from Slicer
+ (collectively, the "Software") constitutes acceptance of all of the
+ terms and conditions of this Agreement. If you do not agree to such
+ terms and conditions, you have no right to contribute your
+ Contribution, or to download, copy, modify, display, distribute or use
+ the Software.
+ .
+ PART A. CONTRIBUTION AGREEMENT - License to Brigham with Right to
+ Sublicense ("Contribution Agreement").
+ .
+ 1. As used in this Contribution Agreement, "you" means the individual
+ contributing the Contribution to Slicer and the institution or
+ entity which employs or is otherwise affiliated with such
+ individual in connection with such Contribution.
+ .
+ 2. This Contribution Agreement applies to all Contributions made to
+ Slicer, including without limitation Contributions made prior to
+ the date of first publication of this Agreement. If at any time you
+ make a Contribution to Slicer, you represent that (i) you are
+ legally authorized and entitled to make such Contribution and to
+ grant all licenses granted in this Contribution Agreement with
+ respect to such Contribution; (ii) if your Contribution includes
+ any patient data, all such data is de-identified in accordance with
+ U.S. confidentiality and security laws and requirements, including
+ but not limited to the Health Insurance Portability and
+ Accountability Act (HIPAA) and its regulations, and your disclosure
+ of such data for the purposes contemplated by this Agreement is
+ properly authorized and in compliance with all applicable laws and
+ regulations; and (iii) you have preserved in the Contribution all
+ applicable attributions, copyright notices and licenses for any
+ third party software or data included in the Contribution.
+ .
+ 3. Except for the licenses granted in this Agreement, you reserve all
+ right, title and interest in your Contribution.
+ .
+ 4. You hereby grant to Brigham, with the right to sublicense, a
+ perpetual, worldwide, non-exclusive, no charge, royalty-free,
+ irrevocable license to use, reproduce, make derivative works of,
+ display and distribute the Contribution. If your Contribution is
+ protected by patent, you hereby grant to Brigham, with the right to
+ sublicense, a perpetual, worldwide, non-exclusive, no-charge,
+ royalty-free, irrevocable license under your interest in patent
+ rights covering the Contribution, to make, have made, use, sell and
+ otherwise transfer your Contribution, alone or in combination with
+ any other code.
+ .
+ 5. You acknowledge and agree that Brigham may incorporate your
+ Contribution into Slicer and may make Slicer available to members
+ of the public on an open source basis under terms substantially in
+ accordance with the Software License set forth in Part B of this
+ Agreement. You further acknowledge and agree that Brigham shall
+ have no liability arising in connection with claims resulting from
+ your breach of any of the terms of this Agreement.
+ .
+ 6. YOU WARRANT THAT TO THE BEST OF YOUR KNOWLEDGE YOUR CONTRIBUTION
+ DOES NOT CONTAIN ANY CODE THAT REQURES OR PRESCRIBES AN "OPEN
+ SOURCE LICENSE" FOR DERIVATIVE WORKS (by way of non-limiting
+ example, the GNU General Public License or other so-called
+ "reciprocal" license that requires any derived work to be licensed
+ under the GNU General Public License or other "open source
+ license").
+ .
+ PART B. DOWNLOADING AGREEMENT - License from Brigham with Right to
+ Sublicense ("Software License").
+ .
+ 1. As used in this Software License, "you" means the individual
+ downloading and/or using, reproducing, modifying, displaying and/or
+ distributing the Software and the institution or entity which
+ employs or is otherwise affiliated with such individual in
+ connection therewith. The Brigham and Women?s Hospital,
+ Inc. ("Brigham") hereby grants you, with right to sublicense, with
+ respect to Brigham's rights in the software, and data, if any,
+ which is the subject of this Software License (collectively, the
+ "Software"), a royalty-free, non-exclusive license to use,
+ reproduce, make derivative works of, display and distribute the
+ Software, provided that:
+ .
+ (a) you accept and adhere to all of the terms and conditions of this
+ Software License;
+ .
+ (b) in connection with any copy of or sublicense of all or any portion
+ of the Software, all of the terms and conditions in this Software
+ License shall appear in and shall apply to such copy and such
+ sublicense, including without limitation all source and executable
+ forms and on any user documentation, prefaced with the following
+ words: "All or portions of this licensed product (such portions are
+ the "Software") have been obtained under license from The Brigham and
+ Women's Hospital, Inc. and are subject to the following terms and
+ conditions:"
+ .
+ (c) you preserve and maintain all applicable attributions, copyright
+ notices and licenses included in or applicable to the Software;
+ .
+ (c) you preserve and maintain all applicable attributions, copyright
+ notices and licenses included in or applicable to the Software;
+ .
+ (d) modified versions of the Software must be clearly identified and
+ marked as such, and must not be misrepresented as being the original
+ Software; and
+ .
+ (e) you consider making, but are under no obligation to make, the
+ source code of any of your modifications to the Software freely
+ available to others on an open source basis.
+ .
+ 2. The license granted in this Software License includes without
+ limitation the right to (i) incorporate the Software into
+ proprietary programs (subject to any restrictions applicable to
+ such programs), (ii) add your own copyright statement to your
+ modifications of the Software, and (iii) provide additional or
+ different license terms and conditions in your sublicenses of
+ modifications of the Software; provided that in each case your use,
+ reproduction or distribution of such modifications otherwise
+ complies with the conditions stated in this Software License.
+ .
+ 3. This Software License does not grant any rights with respect to
+ third party software, except those rights that Brigham has been
+ authorized by a third party to grant to you, and accordingly you
+ are solely responsible for (i) obtaining any permissions from third
+ parties that you need to use, reproduce, make derivative works of,
+ display and distribute the Software, and (ii) informing your
+ sublicensees, including without limitation your end-users, of their
+ obligations to secure any such required permissions.
+
+ 4. The Software has been designed for research purposes only and has
+ not been reviewed or approved by the Food and Drug Administration
+ or by any other agency. YOU ACKNOWLEDGE AND AGREE THAT CLINICAL
+ APPLICATIONS ARE NEITHER RECOMMENDED NOR ADVISED. Any
+ commercialization of the Software is at the sole risk of the party
+ or parties engaged in such commercialization. You further agree to
+ use, reproduce, make derivative works of, display and distribute
+ the Software in compliance with all applicable governmental laws,
+ regulations and orders, including without limitation those relating
+ to export and import control.
+ .
+ 5. The Software is provided "AS IS" and neither Brigham nor any
+ contributor to the software (each a "Contributor") shall have any
+ obligation to provide maintenance, support, updates, enhancements
+ or modifications thereto. BRIGHAM AND ALL CONTRIBUTORS SPECIFICALLY
+ DISCLAIM ALL EXPRESS AND IMPLIED WARRANTIES OF ANY KIND INCLUDING,
+ BUT NOT LIMITED TO, ANY WARRANTIES OF MERCHANTABILITY, FITNESS FOR
+ A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL
+ BRIGHAM OR ANY CONTRIBUTOR BE LIABLE TO ANY PARTY FOR DIRECT,
+ INDIRECT, SPECIAL, INCIDENTAL, EXEMPLARY OR CONSEQUENTIAL DAMAGES
+ HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY ARISING IN ANY WAY
+ RELATED TO THE SOFTWARE, EVEN IF BRIGHAM OR ANY CONTRIBUTOR HAS
+ BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. TO THE MAXIMUM
+ EXTENT NOT PROHIBITED BY LAW OR REGULATION, YOU FURTHER ASSUME ALL
+ LIABILITY FOR YOUR USE, REPRODUCTION, MAKING OF DERIVATIVE WORKS,
+ DISPLAY, LICENSE OR DISTRIBUTION OF THE SOFTWARE AND AGREE TO
+ INDEMNIFY AND HOLD HARMLESS BRIGHAM AND ALL CONTRIBUTORS FROM AND
+ AGAINST ANY AND ALL CLAIMS, SUITS, ACTIONS, DEMANDS AND JUDGMENTS
+ ARISING THEREFROM.
+ .
+ 6. None of the names, logos or trademarks of Brigham or any of
+ Brigham's affiliates or any of the Contributors, or any funding
+ agency, may be used to endorse or promote products produced in
+ whole or in part by operation of the Software or derived from or
+ based on the Software without specific prior written permission
+ from the applicable party.
+ .
+ 7. Any use, reproduction or distribution of the Software which is not
+ in accordance with this Software License shall automatically revoke
+ all rights granted to you under this Software License and render
+ Paragraphs 1 and 2 of this Software License null and void.
+ .
+ 8. This Software License does not grant any rights in or to any
+ intellectual property owned by Brigham or any Contributor except
+ those rights expressly granted hereunder.
+ .
+ PART C. MISCELLANEOUS
+ .
+ This Agreement shall be governed by and construed in accordance with
+ the laws of The Commonwealth of Massachusetts without regard to
+ principles of conflicts of law. This Agreement shall supercede and
+ replace any license terms that you may have agreed to previously with
+ respect to Slicer.
+
+
+Files:
+ ./Applications/CLI/RegisterImagesModule/Applications/itkImageToImageRegistrationMethodTestingHelper.txx
+ ./Applications/CLI/RegisterImagesModule/Applications/InitialImageToImageRegistrationMethod.cxx
+ ./Applications/CLI/RegisterImagesModule/Applications/BSplineImageToImageRegistrationMethod.cxx
+ ./Applications/CLI/RegisterImagesModule/Applications/AffineImageToImageRegistrationMethod.cxx
+ ./Applications/CLI/RegisterImagesModule/Applications/itkImageToImageRegistrationMethodTestingHelper.h
+ ./Applications/CLI/RegisterImagesModule/Applications/RigidImageToImageRegistrationMethod.cxx
+ ./Modules/VolumeRenderingCuda/vtkVolumeRenderingCudaFactory.cxx
+ ./Modules/VolumeRenderingCuda/vtkVolumeRenderingCudaFactory.h
+ ./Modules/VolumeRenderingCuda/vtkVolumeRenderingToolkit.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastCompositeGOShadeHelper.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastHelper.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerVolumePropertyWidget.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointRayCastImage.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastCompositeGOHelper.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastMIPHelper.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerBoxRepresentation.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastCompositeHelper.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastCompositeGOShadeHelper.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerBoxWidget.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerMesaRayCastImageDisplayHelper.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastHelper.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastCompositeGOHelper.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastCompositeHelper.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerOpenGLRayCastImageDisplayHelper.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerOpenGLVolumeTextureMapper3D.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerBoxWidget.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastCompositeShadeHelper.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointRayCastImage.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerVolumeTextureMapper3D.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerOpenGLVolumeTextureMapper3D.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerMesaRayCastImageDisplayHelper.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerOpenGLRayCastImageDisplayHelper.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerVolumePropertyWidget.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerRayCastImageDisplayHelper.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerRayCastImageDisplayHelper.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastCompositeShadeHelper.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerVolumeRenderingFactory.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerBoxRepresentation.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerBoxWidget2.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastMIPHelper.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerVolumeRenderingFactory.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastMapper.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastMapper.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerBoxWidget2.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerVolumeTextureMapper3D.h
+ ./Modules/Volumes/vtkKWWindowLevelThresholdEditor.h
+ ./Modules/Volumes/vtkKWWindowLevelThresholdEditor.cxx
+ ./Modules/Meshing/Common/vtkMimxErrorCallback.h
+ ./Modules/Meshing/Common/vtkFESurfaceList.cxx
+ ./Modules/Meshing/Common/vtkLinkedListIterator.txx
+ ./Modules/Meshing/Common/vtkLocalLinkedListWrapper.cxx
+ ./Modules/Meshing/Common/vtkLinkedListIterator.h
+ ./Modules/Meshing/Common/vtkLinkedListWrapperTree.cxx
+ ./Modules/Meshing/Common/vtkFiniteElementMeshList.cxx
+ ./Modules/Meshing/Common/vtkAbstractList.txx
+ ./Modules/Meshing/Common/vtkContainer.h
+ ./Modules/Meshing/Common/vtkLinkedListWrapper.h
+ ./Modules/Meshing/Common/vtkLinkedList.txx
+ ./Modules/Meshing/Common/vtkContainer.cxx
+ ./Modules/Meshing/Common/vtkFiniteElementBuildingBlockList.h
+ ./Modules/Meshing/Common/vtkLinkedListWrapper.cxx
+ ./Modules/Meshing/Common/vtkLinkedListWrapperTree.h
+ ./Modules/Meshing/Common/vtkAbstractIterator.txx
+ ./Modules/Meshing/Common/vtkFESurfaceList.h
+ ./Modules/Meshing/Common/vtkLocalLinkedListWrapper.h
+ ./Modules/Meshing/Common/vtkFiniteElementBuildingBlockList.cxx
+ ./Modules/Meshing/Common/vtkAbstractIterator.h
+ ./Modules/Meshing/Common/vtkFiniteElementMeshList.h
+ ./Modules/Meshing/Common/vtkLinkedList.h
+ ./Modules/Meshing/Common/vtkAbstractList.h
+ ./Modules/Meshing/BuildingBlock/vtkKWMimxApplication.cxx
+ ./Modules/Meshing/Filter/vtkMeshQualityExtended.cxx
+ ./Base/Logic/vtkImageSlice.cxx
+ ./Base/Logic/vtkImageSlicePaint.cxx
+ ./Base/Logic/vtkImageResliceMask.h
+ ./Base/Logic/vtkImageSlicePaint.h
+ ./Base/Logic/vtkImageResliceMask.cxx
+ ./Base/Logic/vtkSlicerGlyphSource2D.cxx
+ ./Base/Logic/vtkImageSlice.h
+ ./Base/GUI/vtkSlicerBoxRepresentation.h
+ ./Base/GUI/vtkKWMatrix4x4.cxx
+ ./Base/GUI/vtkSlicerViewerInteractorStyle.cxx
+ ./Base/GUI/vtkKWScriptedWidget.h
+ ./Base/GUI/vtkSlicerInteractorStyle.cxx
+ ./Base/GUI/vtkSlicerRenderWidget.cxx
+ ./Base/GUI/vtkKWMatrix4x4.h
+ ./Base/GUI/vtkSlicerApplication.cxx
+ ./Base/GUI/vtkKWScriptedWidget.cxx
+ ./Base/GUI/vtkSlicerRenderWidget.h
+ ./Base/GUI/vtkSlicerViewerInteractorStyle.h
+ ./Base/GUI/vtkSlicerBoxRepresentation.cxx
+ ./Base/GUI/vtkSlicerBoxWidget2.cxx
+ ./Base/GUI/vtkSlicerInteractorStyle.h
+ ./Base/GUI/vtkSlicerBoxWidget2.h
+ ./Libs/vtkTeem/vtkDiffusionTensorMathematicsSimple.h
+ ./Libs/vtkTeem/vtkImageLabelCombine.h
+ ./Libs/vtkTeem/vtkPolyDataTensorToColor.cxx
+ ./Libs/vtkTeem/vtkNRRDReader.cxx
+ ./Libs/vtkTeem/vtkNRRDReader.h
+ ./Libs/vtkTeem/vtkDiffusionTensorMathematicsSimple.cxx
+ ./Libs/vtkTeem/vtkImageLabelCombine.cxx
+ ./Libs/vtkTeem/vtkPolyDataTensorToColor.h
+ ./Libs/vtkITK/vtkITKWandImageFilter.cxx
+ ./Libs/vtkITK/vtkITKLevelTracingImageFilter.cxx
+ ./Libs/vtkITK/vtkITKLevelTracing3DImageFilter.cxx
+Copyright: 1993-2008 Ken Martin, Will Schroeder, Bill Lorensen
+License: other (VTK license)
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions
+ are met:
+ .
+ * Redistributions of source code must retain the above copyright
+ notice, this list of conditions and the following disclaimer.
+ .
+ * Redistributions in binary form must reproduce the above copyright
+ notice, this list of conditions and the following disclaimer in
+ the documentation and/or other materials provided with the
+ distribution.
+ .
+ * Neither name of Ken Martin, Will Schroeder, or Bill Lorensen nor
+ the names of any contributors may be used to endorse or promote
+ products derived from this software without specific prior written
+ permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+ ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+ LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
+ FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
+ AUTHORS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
+ INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
+ BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+ LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN
+ ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ POSSIBILITY OF SUCH DAMAGE.
+
+
+Files:
+ ./Applications/CLI/DWIDicomLoad.cxx
+ ./Applications/CLI/DicomToNrrdConverter.cxx
+Copyright: General Electric Global Research.
+License: other (3D Slicer license)
+ for license text see above
+
+
+Files:
+ ./Modules/Meshing/Common/vtkMeshQualityClass.cxx
+ ./Modules/Meshing/BuildingBlock/vtkFaceHedgeHog.cxx
+ ./Modules/Meshing/BuildingBlock/vtkFaceHedgeHog.h
+ ./Modules/Meshing/Filter/vtkFaceHedgeHog.cxx
+Copyright: 2007, KnowledgeVis, LLC.
+License: other (3D Slicer license)
+ for license text see above
+
+
+Files:
+ ./Modules/Meshing/Common/mimxMatrixTemplate.h
+Copyright: 2000, S. D. Rajan
+License: other (3D Slicer license)
+ see above
+
+
+
+Files: ./Modules/Meshing/*
+Copyright: 2008 MIMX, The University of Iowa
+License: other (MIMX license)
+ Permission is hereby granted, free of charge, to any
+ person obtaining a copy of this software and
+ associated documentation files (the "Software"), to
+ deal in the Software without restriction, including
+ without limitation the rights to use, copy, modify,
+ merge, publish, distribute, and/or sell copies of the
+ Software, and to permit persons to whom the Software
+ is furnished to do so, provided that the above
+ copyright notice(s) and this permission notice appear
+ in all copies of the Software and that both the above
+ copyright notice(s) and this permission notice appear
+ in supporting documentation.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF
+ ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED
+ TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A
+ PARTICULAR PURPOSE AND NONINFRINGEMENT OF THIRD PARTY
+ RIGHTS. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR
+ HOLDERS INCLUDED IN THIS NOTICE BE LIABLE FOR ANY
+ CLAIM, OR ANY SPECIAL INDIRECT OR CONSEQUENTIAL DAMAGES,
+ OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE,
+ DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT,
+ NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF
+ OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS
+ SOFTWARE.
+ .
+ See the web site: http://www.ccad.uiowa.edu/mimx for
+ more information.
+
+
+Files:
+ ./Modules/EMSegment/Algorithm/EMLocalShapeCostFunction.h
+ ./Modules/EMSegment/Algorithm/EMLocalAlgorithm.txx
+ ./Modules/EMSegment/Algorithm/EMLocalAlgorithm_Miscellaneous.txx
+ ./Modules/EMSegment/Algorithm/EMLocalAlgorithm_Print.txx
+ ./Modules/EMSegment/Algorithm/EMLocalInterface.h
+ ./Modules/EMSegment/Algorithm/EMLocalAlgorithm.h
+ ./Modules/EMSegment/Algorithm/EMLocalShapeCostFunction.cxx
+ ./Modules/EMSegment/Algorithm/EMLocalInterface.cxx
+ ./Modules/EMSegment/Algorithm/EMLocalAlgorithm_MeanField.txx
+ ./Modules/EMSegment/Algorithm/EMLocalAlgorithm_Initialization.txx
+ ./Modules/EMSegment/Algorithm/EMLocalRegistrationCostFunction.h
+ ./Modules/EMSegment/Algorithm/EMLocalRegistrationCostFunction.cxx
+ ./Modules/EMSegment/Algorithm/itkEMLocalOptimization.h
+ ./Modules/ChangeTracker/Filters/vtkImageSumOverVoxels.h
+Copyright: 2001, Massachusetts Institute of Technology
+License: other (MIT license)
+ Permission is hereby granted, without payment, to copy, modify, display
+ and distribute this software and its documentation, if any, for any purpose,
+ provided that the above copyright notice and the following three paragraphs
+ appear on all copies of this software. Use of this software constitutes
+ acceptance of these terms and conditions.
+ .
+ IN NO EVENT SHALL MIT BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL,
+ INCIDENTAL, OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OF THIS SOFTWARE
+ AND ITS DOCUMENTATION, EVEN IF MIT HAS BEEN ADVISED OF THE POSSIBILITY OF
+ SUCH DAMAGE.
+ .
+ MIT SPECIFICALLY DISCLAIMS ANY EXPRESS OR IMPLIED WARRANTIES INCLUDING,
+ BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR
+ A PARTICULAR PURPOSE, AND NON-INFRINGEMENT.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS." MIT HAS NO OBLIGATION TO PROVIDE
+ MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS.
+
+
+Files:
+ ./CMake/cuda/CudaDependency.cmake
+ ./CMake/cuda/parse_cubin.cmake
+ ./CMake/cuda/make2cmake.cmake
+ ./CMake/cuda/FindCuda.cmake
+Copyright: 2007, Scientific Computing and Imaging Institute, University of Utah
+License: other
+ License for the specific language governing rights and limitations under
+ Permission is hereby granted, free of charge, to any person obtaining a
+ copy of this software and associated documentation files (the "Software"),
+ to deal in the Software without restriction, including without limitation
+ the rights to use, copy, modify, merge, publish, distribute, sublicense,
+ and/or sell copies of the Software, and to permit persons to whom the
+ Software is furnished to do so, subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included
+ in all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
+ OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
+ THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+ FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
+ DEALINGS IN THE SOFTWARE.
+
+
+Files:
+ ./Applications/CLI/Add.cxx
+ ./Applications/CLI/CurvatureAnisotropicDiffusion.cxx
+ ./Applications/CLI/ResampleVolume.cxx
+ ./Applications/CLI/GradientAnisotropicDiffusion.cxx
+ ./Applications/CLI/MedianImageFilter.cxx
+ ./Applications/CLI/Threshold.cxx
+ ./Applications/CLI/HistogramMatching.cxx
+ ./Applications/CLI/BSplineDeformableRegistration.cxx
+ ./Applications/CLI/UtahBSpline/UtahBSplineDeformableRegistration.cxx
+ ./Applications/CLI/OtsuThresholdSegmentation.cxx
+ ./Applications/CLI/DiffusionApplications/jointLMMSE/itkComputeRestrictedHistogram.h
+ ./Applications/CLI/DiffusionApplications/jointLMMSE/LMMSE.cxx
+ ./Applications/CLI/DiffusionApplications/jointLMMSE/itkComputeRestrictedHistogram.txx
+ ./Applications/CLI/DiffusionApplications/dwiNoiseFilter/itkLMMSEVectorImageFilter.txx
+ ./Applications/CLI/DiffusionApplications/dwiNoiseFilter/itkComputeRestrictedHistogram.h
+ ./Applications/CLI/DiffusionApplications/dwiNoiseFilter/LMMSE.cxx
+ ./Applications/CLI/DiffusionApplications/dwiNoiseFilter/itkComputeRestrictedHistogram.txx
+ ./Applications/CLI/DiffusionApplications/dwiNoiseFilter/itkExtractVolumeFilter.h
+ ./Applications/CLI/DiffusionApplications/dwiNoiseFilter/itkLMMSEVectorImageFilter.h
+ ./Applications/CLI/DiffusionApplications/dwiNoiseFilter/itkComputeStatisticsWherePositiveFilter.txx
+ ./Applications/CLI/DiffusionApplications/dwiNoiseFilter/itkMaskedMeanImageFilter.txx
+ ./Applications/CLI/DiffusionApplications/dwiNoiseFilter/itkExtractVolumeFilter.txx
+ ./Applications/CLI/DiffusionApplications/dwiNoiseFilter/itkMaskedMeanImageFilter.h
+ ./Applications/CLI/DiffusionApplications/dwiNoiseFilter/itkComputeStatisticsWherePositiveFilter.h
+ ./Applications/CLI/DiffusionApplications/dwiUNLM/itkComputeRestrictedHistogram.h
+ ./Applications/CLI/DiffusionApplications/dwiUNLM/UNLM.cxx
+ ./Applications/CLI/DiffusionApplications/dwiUNLM/itkComputeRestrictedHistogram.txx
+ ./Applications/CLI/DiffusionApplications/dwiUNLM/itkUNLMFilter.h
+ ./Applications/CLI/DiffusionApplications/dwiUNLM/itkUNLMFilter.txx
+ ./Applications/CLI/CheckerBoard.cxx
+ ./Applications/CLI/Subtract.cxx
+ ./Applications/CLI/Testing/BSplineWarping3DTest.cxx
+ ./Applications/CLI/RegisterImagesModule/itkRigidImageToImageRegistrationMethod.txx
+ ./Applications/CLI/RegisterImagesModule/itkBSplineImageToImageRegistrationMethod.h
+ ./Applications/CLI/RegisterImagesModule/itkBSplineImageToImageRegistrationMethod.txx
+ ./Applications/CLI/RegisterImagesModule/itkImageToImageRegistrationMethod.h
+ ./Applications/CLI/RegisterImagesModule/itkAffineImageToImageRegistrationMethod.h
+ ./Applications/CLI/RegisterImagesModule/itkImageToImageRegistrationHelper.h
+ ./Applications/CLI/RegisterImagesModule/itkOptimizedImageToImageRegistrationMethod.txx
+ ./Applications/CLI/RegisterImagesModule/itkInitialImageToImageRegistrationMethod.txx
+ ./Applications/CLI/RegisterImagesModule/itkImageToImageRegistrationHelper.txx
+ ./Applications/CLI/RegisterImagesModule/itkRigidImageToImageRegistrationMethod.h
+ ./Applications/CLI/RegisterImagesModule/itkImageToImageRegistrationMethod.txx
+ ./Applications/CLI/RegisterImagesModule/itkOptimizedImageToImageRegistrationMethod.h
+ ./Applications/CLI/RegisterImagesModule/itkInitialImageToImageRegistrationMethod.h
+ ./Applications/CLI/RegisterImagesModule/itkAffineImageToImageRegistrationMethod.txx
+ ./Applications/CLI/TestGridTransformRegistration.cxx
+ ./Applications/CLI/OtsuThresholdImageFilter.cxx
+ ./Applications/CLI/OrientImage.cxx
+ ./Base/CLI/itkPluginFilterWatcher.h
+ ./Modules/Meshing/Mesh/itkMimxImageToVtkUnstructuredGridFilter.txx
+ ./Modules/Meshing/Filter/vtkMimxRebinMaterialProperty.cxx
+ ./Modules/Meshing/Filter/vtkMimxRebinMaterialProperty.h
+ ./Modules/Meshing/Filter/itkMimxImageToVtkUnstructuredGridFilter.txx
+ ./Modules/Meshing/Testing/vtkRebinMaterialPropertyTest.cxx
+ ./Modules/Meshing/Testing/itkImageToVtkUnstructuredGridTest.cxx
+ ./Modules/Meshing/Adapter/itkImageToVTKImageFilter.h
+ ./Modules/Meshing/Adapter/itkImageToVTKImageFilter.txx
+ ./Modules/Meshing/IO/itkPluginFilterWatcher.h
+ ./Libs/vtkITK/itkEncodedTransformFileReader.h
+ ./Libs/vtkITK/itkEncodedTransformFileWriter.h
+ ./Libs/vtkITK/vtkITKNewOtsuThresholdImageFilter.cxx
+ ./Libs/vtkITK/itkNewOtsuThresholdImageFilter.h
+ ./Libs/vtkITK/itkNewOtsuThresholdImageFilter.txx
+ ./Libs/vtkITK/itkNewOtsuThresholdImageCalculator.txx
+ ./Libs/vtkITK/itkEncodedTransformFileWriter.cxx
+ ./Libs/vtkITK/itkDisplacementFieldTransform.h
+ ./Libs/vtkITK/itkEncodedTransformFileReader.cxx
+ ./Libs/vtkITK/itkDisplacementFieldTransform.txx
+ ./Libs/MRMLIDImageIO/itkMRMLIDImageIOFactory.h
+ ./Libs/MRMLIDImageIO/itkMRMLIDImageIOFactory.cxx
+Copyright: Insight Software Consortium.
+License: other (ITK license)
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are met:
+ .
+ * Redistributions of source code must retain the above copyright notice,
+ this list of conditions and the following disclaimer.
+ .
+ * Redistributions in binary form must reproduce the above copyright notice,
+ this list of conditions and the following disclaimer in the documentation
+ and/or other materials provided with the distribution.
+ .
+ * Neither the name of the Insight Software Consortium nor the names of its
+ contributors may be used to endorse or promote products derived from this
+ software without specific prior written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+ ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+ DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
+ ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+ (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
+ ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+
+Files: ./Modules/Meshing/Filter/itkMimxAccumulator.h
+Copyright:
+ 2008 MIMX, The University of Iowa
+ Insight Software Consortium
+Licence: other (ITK license AND MIMX license)
+ for license text see above
+
+
+Files:
+ ./Modules/ChangeTracker/Filters/vtkImageKilianDistanceTransform.cxx
+ ./Modules/ChangeTracker/Filters/vtkImageKilianDistanceTransform.h
+Copyright:
+ 1993-2002 Ken Martin, Will Schroeder, Bill Lorensen
+ 2001 Massachusetts Institute of Technology
+License: other (VTK license and MIT license)
+ for license text see above
+
+
+Files: ./Libs/SlicerIO/utilities.c
+Copyright: 2004, Robert Seeger (RHS)
+License: other
+ On Tue, 2009-05-19 at 09:12 -0400, Robert Seeger wrote:
+ > Dominique,
+ >
+ > You are welcome to use my code however you need to, free of license
+ > restrictions. While I'd prefer you didn't claim you wrote it yourself,
+ > I don't particularly care if you include anything indicating that
+ > I did write it (I don't mind either way).
+ >
+
+
+Files:
+ ./Applications/CLI/DiffeomorphicDemonsRegistration/DemonsRegistration.cxx
+Copyright: Tom Vercauteren, INRIA & Mauna Kea Technologies
+License: BSD
+ On Debian systems the full text of the BSD License can be
+ found in the `/usr/share/common-licenses/BSD' file.
+
+
+Files:
+ ./Modules/Meshing/Common/vtkPVAxesActor.cxx
+ ./Modules/Meshing/Common/vtkPVAxesActor.h
+Copyright: Kitware, Inc.
+License: other (ParaView License Version 1.2)
+ -----------------------------------------------------------------------------
+ Copyright (c) 2005-2008 Sandia Corporation, Kitware Inc.
+ .
+ Sandia National Laboratories, New Mexico PO Box 5800 Albuquerque, NM 87185
+ .
+ Kitware Inc.
+ 28 Corporate Drive
+ Clifton Park, NY 12065
+ USA
+ .
+ Under the terms of Contract DE-AC04-94AL85000, there is a non-exclusive
+ license for use of this work by or on behalf of the U.S. Government.
+ .
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are met:
+ .
+ * Redistributions of source code must retain the above copyright notice,
+ this list of conditions and the following disclaimer.
+ .
+ * Redistributions in binary form must reproduce the above copyright notice,
+ this list of conditions and the following disclaimer in the documentation
+ and/or other materials provided with the distribution.
+ .
+ * Neither the name of Kitware nor the names of any contributors may be used
+ to endorse or promote products derived from this software without specific
+ prior written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS''
+ AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR
+ ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+ DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+ SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+ OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ -----------------------------------------------------------------------------
+
+
+Files:
+ ./Base/GUI/Python/ipTk.py
+Copyright: 2009, Demian Wassermann, EPI Odyssee, INRIA Sophia-Antipolis
+License: BSD
+ On Debian systems the full text of the BSD License can be
+ found in the `/usr/share/common-licenses/BSD' file.
+
+
+Files:
+ ./Base/GUI/Python/_mytkinter.c
+Copyright: 1994 Steen Lumholt
+License: PSF-2
+ PYTHON SOFTWARE FOUNDATION LICENSE VERSION 2
+ --------------------------------------------
+ .
+ 1. This LICENSE AGREEMENT is between the Python Software Foundation
+ ("PSF"), and the Individual or Organization ("Licensee") accessing and
+ otherwise using this software ("Python") in source or binary form and
+ its associated documentation.
+ .
+ 2. Subject to the terms and conditions of this License Agreement, PSF
+ hereby grants Licensee a nonexclusive, royalty-free, world-wide
+ license to reproduce, analyze, test, perform and/or display publicly,
+ prepare derivative works, distribute, and otherwise use Python
+ alone or in any derivative version, provided, however, that PSF's
+ License Agreement and PSF's notice of copyright, i.e., "Copyright (c)
+ 2001, 2002, 2003, 2004, 2005, 2006 Python Software Foundation; All Rights
+ Reserved" are retained in Python alone or in any derivative version
+ prepared by Licensee.
+ .
+ 3. In the event Licensee prepares a derivative work that is based on
+ or incorporates Python or any part thereof, and wants to make
+ the derivative work available to others as provided herein, then
+ Licensee hereby agrees to include in any such work a brief summary of
+ the changes made to Python.
+ .
+ 4. PSF is making Python available to Licensee on an "AS IS"
+ basis. PSF MAKES NO REPRESENTATIONS OR WARRANTIES, EXPRESS OR
+ IMPLIED. BY WAY OF EXAMPLE, BUT NOT LIMITATION, PSF MAKES NO AND
+ DISCLAIMS ANY REPRESENTATION OR WARRANTY OF MERCHANTABILITY OR FITNESS
+ FOR ANY PARTICULAR PURPOSE OR THAT THE USE OF PYTHON WILL NOT
+ INFRINGE ANY THIRD PARTY RIGHTS.
+ .
+ 5. PSF SHALL NOT BE LIABLE TO LICENSEE OR ANY OTHER USERS OF PYTHON
+ FOR ANY INCIDENTAL, SPECIAL, OR CONSEQUENTIAL DAMAGES OR LOSS AS
+ A RESULT OF MODIFYING, DISTRIBUTING, OR OTHERWISE USING PYTHON,
+ OR ANY DERIVATIVE THEREOF, EVEN IF ADVISED OF THE POSSIBILITY THEREOF.
+ .
+ 6. This License Agreement will automatically terminate upon a material
+ breach of its terms and conditions.
+ .
+ 7. Nothing in this License Agreement shall be deemed to create any
+ relationship of agency, partnership, or joint venture between PSF and
+ Licensee. This License Agreement does not grant permission to use PSF
+ trademarks or trade name in a trademark sense to endorse or promote
+ products or services of Licensee, or any third party.
+ .
+ 8. By copying, installing or otherwise using Python, Licensee
+ agrees to be bound by the terms and conditions of this License
+ Agreement.
+
+
+Files: debian/*
+Copyright: 2008-2009, Dominique Belhachemi <domibel at cs.tu-berlin.de>
+License: BSD
+ On Debian systems the full text of the BSD License can be
+ found in the `/usr/share/common-licenses/BSD' file.
Added: packages/slicer/tags/3.4.0~svn10133-1/dirs
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn10133-1/dirs?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn10133-1/dirs (added)
+++ packages/slicer/tags/3.4.0~svn10133-1/dirs Mon Aug 10 00:09:16 2009
@@ -1,0 +1,2 @@
+usr/lib/InsightToolkit
+usr/lib/KWWidgets
Added: packages/slicer/tags/3.4.0~svn10133-1/docs
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn10133-1/docs?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn10133-1/docs (added)
+++ packages/slicer/tags/3.4.0~svn10133-1/docs Mon Aug 10 00:09:16 2009
@@ -1,0 +1,1 @@
+README.txt
Added: packages/slicer/tags/3.4.0~svn10133-1/get-orig-source
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn10133-1/get-orig-source?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn10133-1/get-orig-source (added)
+++ packages/slicer/tags/3.4.0~svn10133-1/get-orig-source Mon Aug 10 00:09:16 2009
@@ -1,0 +1,58 @@
+#!/bin/sh
+set -ex
+
+PACKAGE=slicer
+
+VERSION=${VERSION:-$2}
+TARFILE=${TARFILE:-$3}
+
+if [ -z ${VERSION}]; then
+VERSION=`dpkg-parsechangelog | sed -n -e 's/^Version: \(.*\)-[^-]*$/\1/p'`
+fi
+
+REVISION=`echo $VERSION | sed -e 's/^.*svn//g'`
+
+
+if [ -z ${TARFILE}]; then
+TARFILE=${PACKAGE}_${VERSION}.orig.tar.gz
+fi
+
+FOLDER=${PACKAGE}-${VERSION}
+
+
+svn export --quiet --revision ${REVISION} http://svn.slicer.org/Slicer3/branches/Slicer-3-4 ${FOLDER}
+
+cd ${FOLDER}
+#rm ./Utilities/Launcher/*.tcl
+#rm ./Utilities/Launcher/CMakeLists.txt
+rm -rf ./Utilities/Launcher/Slicer3Launchers/
+rm -rf ./Utilities/Launcher/tclkits/
+rm -rf ./Utilities/Launcher/Slicer3.vfs/
+rm -f ./Utilities/Launcher/3DSlicerLogoICOimages/Thumbs.db
+rm -rf ./Libs/tclap/
+#- find . -type f -name *.vcproj | xargs rm
+rm -f ./Modules/QueryAtlas/Resources/controlledVocabulary.xls
+#rm -f ./Modules/ChangeTracker/Testing/scan2.raw.gz
+#rm -f ./Modules/ChangeTracker/Simulation/original.raw.gz
+#rm -f ./Modules/ChangeTracker/Testing/scan1.raw.gz
+# remove jar files
+rm -rf ./Modules/QueryAtlas/OntologyViz/
+#rm -rf ./Testing/
+#rm ./Modules/EMSegment/Testing/TestData/TutorialTest/StandardData/StandardSegmentationResult_small_normalizationOn.raw
+#rm ./Modules/EMSegment/Testing/TestData/TutorialTest/StandardData/StandardSegmentationResult_small.raw
+#rm ./Modules/EMSegment/Testing/TestData/TutorialTest/VolumeData/atlasBackgroundReg_small.raw
+#rm ./Modules/EMSegment/Testing/TestData/TutorialTest/VolumeData/atlasCSFReg_small.raw
+#rm ./Modules/EMSegment/Testing/TestData/TutorialTest/VolumeData/atlasGreymatterReg_small.raw
+#rm ./Modules/EMSegment/Testing/TestData/TutorialTest/VolumeData/atlasWhitematterReg_small.raw
+#rm ./Modules/EMSegment/Testing/TestData/TutorialTest/VolumeData/segmentationResult_small.raw
+#rm ./Modules/EMSegment/Testing/TestData/TutorialTest/VolumeData/targetT1Normed_small.raw
+#rm ./Modules/EMSegment/Testing/TestData/TutorialTest/VolumeData/targetT2Normed_small.raw
+rm ./Modules/Editor/ImageData/Thumbs.db
+rm ./Modules/MRAblation/.vtkMRAblationLogic.cxx.swo
+rm -rf ./Modules/ProstateNav/newmat
+#grep -rnl Davies ./Modules/ProstateNav/newmat/ | xargs rm
+cd ..
+
+GZIP=-9 tar czf ${TARFILE} ${FOLDER}
+rm -rf ${FOLDER}
+
Added: packages/slicer/tags/3.4.0~svn10133-1/libslicer3-dev.install
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn10133-1/libslicer3-dev.install?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn10133-1/libslicer3-dev.install (added)
+++ packages/slicer/tags/3.4.0~svn10133-1/libslicer3-dev.install Mon Aug 10 00:09:16 2009
@@ -1,0 +1,10 @@
+usr/lib/lib*.so
+usr/lib/Slicer3/lib*.so
+usr/lib/Slicer3/Modules/lib*.so
+usr/include
+usr/lib/GenerateLM
+usr/lib/GenerateCLP
+usr/lib/LoadableModule
+usr/lib/ModuleDescriptionParser
+usr/lib/Slicer3/*cmake
+usr/lib/Slicer3/CMake
Added: packages/slicer/tags/3.4.0~svn10133-1/libslicer3.install
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn10133-1/libslicer3.install?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn10133-1/libslicer3.install (added)
+++ packages/slicer/tags/3.4.0~svn10133-1/libslicer3.install Mon Aug 10 00:09:16 2009
@@ -1,0 +1,7 @@
+usr/lib/lib*.so.*
+usr/lib/Slicer3/lib*.so.*
+usr/lib/Slicer3/ITKFactories/libCommandIOPlugin.so
+usr/lib/Slicer3/ITKFactories/libMRMLIDIOPlugin.so
+usr/lib/Slicer3/ITKFactories/libMGHIOPlugin.so
+usr/lib/Slicer3/Plugins/lib*.so
+usr/lib/SlicerIO/libslicerio.a
Added: packages/slicer/tags/3.4.0~svn10133-1/libslicer3.lintian-overrides
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn10133-1/libslicer3.lintian-overrides?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn10133-1/libslicer3.lintian-overrides (added)
+++ packages/slicer/tags/3.4.0~svn10133-1/libslicer3.lintian-overrides Mon Aug 10 00:09:16 2009
@@ -1,0 +1,1 @@
+libslicer3: package-name-doesnt-match-sonames libCommandIO3 libFreeSurfer3 libIGT3 libLoadableModule3 libMGHIO3 libMRML3 libMRMLIDIO3 libModuleDescriptionParser3 libQdec3 libRemoteIO3 libvtkITK3 libvtkTeem3
Added: packages/slicer/tags/3.4.0~svn10133-1/menu
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn10133-1/menu?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn10133-1/menu (added)
+++ packages/slicer/tags/3.4.0~svn10133-1/menu Mon Aug 10 00:09:16 2009
@@ -1,0 +1,2 @@
+?package(slicer):needs="X11" section="Applications/Science/Medicine"\
+ title="3D Slicer" command="/usr/bin/slicer3"
Added: packages/slicer/tags/3.4.0~svn10133-1/patches/00list
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn10133-1/patches/00list?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn10133-1/patches/00list (added)
+++ packages/slicer/tags/3.4.0~svn10133-1/patches/00list Mon Aug 10 00:09:16 2009
@@ -1,0 +1,1 @@
+50_all_changes.dpatch
Added: packages/slicer/tags/3.4.0~svn10133-1/patches/50_all_changes.dpatch
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn10133-1/patches/50_all_changes.dpatch?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn10133-1/patches/50_all_changes.dpatch (added)
+++ packages/slicer/tags/3.4.0~svn10133-1/patches/50_all_changes.dpatch Mon Aug 10 00:09:16 2009
@@ -1,0 +1,1368 @@
+#! /bin/sh /usr/share/dpatch/dpatch-run
+## 50_all_changes.dpatch by <domibel at sid1500>
+##
+## All lines beginning with `## DP:' are a description of the patch.
+## DP: This patch adds soname version numbers
+
+ at DPATCH@
+diff -urNad slicer-3.4.0~svn10133~/Applications/CLI/CMakeLists.txt slicer-3.4.0~svn10133/Applications/CLI/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Applications/CLI/CMakeLists.txt 2009-07-22 09:12:49.000000000 -0400
++++ slicer-3.4.0~svn10133/Applications/CLI/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -269,19 +269,19 @@
+ target_link_libraries (${CLP}Lib ITKIO ITKBasicFilters)
+
+ #####################
+-set (CLP DicomToNrrdConverter)
+-
+-set ( ${CLP}_SOURCE ${CLP}.cxx)
+-generateclp(${CLP}_SOURCE ${CLP}.xml ${Slicer3_SOURCE_DIR}/Resources/NAMICLogo.h)
+-add_executable(${CLP} ${${CLP}_SOURCE})
+-slicer3_set_plugins_output_path(${CLP})
+-target_link_libraries (${CLP} ITKIO ITKBasicFilters)
+-
+-add_library(${CLP}Lib SHARED ${${CLP}_SOURCE})
+-slicer3_set_plugins_output_path(${CLP}Lib)
+-set_target_properties (${CLP}Lib PROPERTIES COMPILE_FLAGS "-Dmain=ModuleEntryPoint")
+-target_link_libraries (${CLP}Lib ITKIO ITKBasicFilters)
+-
++#set (CLP DicomToNrrdConverter)
++#
++#set ( ${CLP}_SOURCE ${CLP}.cxx)
++#generateclp(${CLP}_SOURCE ${CLP}.xml ${Slicer3_SOURCE_DIR}/Resources/NAMICLogo.h)
++#add_executable(${CLP} ${${CLP}_SOURCE})
++#slicer3_set_plugins_output_path(${CLP})
++#target_link_libraries (${CLP} ITKIO ITKBasicFilters)
++#
++#add_library(${CLP}Lib SHARED ${${CLP}_SOURCE})
++#slicer3_set_plugins_output_path(${CLP}Lib)
++#set_target_properties (${CLP}Lib PROPERTIES COMPILE_FLAGS "-Dmain=ModuleEntryPoint")
++#target_link_libraries (${CLP}Lib ITKIO ITKBasicFilters)
++#
+ #####################
+ set (CLP DWIDicomLoad)
+
+@@ -569,11 +569,11 @@
+
+ else ( ${ITK_VERSION_MAJOR} GREATER 3 )
+
+- if ( ${ITK_VERSION_MAJOR} MATCHES 3 AND ${ITK_VERSION_MINOR} GREATER 12 )
++ if ( ${ITK_VERSION_MAJOR} MATCHES 3 AND ${ITK_VERSION_MINOR} GREATER 14 )
+
+ subdirs( RegisterImagesModule )
+
+- else ( ${ITK_VERSION_MAJOR} MATCHES 3 AND ${ITK_VERSION_MINOR} GREATER 12 )
++ else ( ${ITK_VERSION_MAJOR} MATCHES 3 AND ${ITK_VERSION_MINOR} GREATER 14 )
+
+ if ( ${ITK_VERSION_MAJOR} MATCHES 3 AND ${ITK_VERSION_MINOR} GREATER 6 )
+ if ( ITK_USE_OPTIMIZED_REGISTRATION_METHODS )
+@@ -585,7 +585,7 @@
+ message ("RegisterImagesModule requires ITK version 3.8 or higher")
+ endif ( ${ITK_VERSION_MAJOR} MATCHES 3 AND ${ITK_VERSION_MINOR} GREATER 6 )
+
+- endif ( ${ITK_VERSION_MAJOR} MATCHES 3 AND ${ITK_VERSION_MINOR} GREATER 12 )
++ endif ( ${ITK_VERSION_MAJOR} MATCHES 3 AND ${ITK_VERSION_MINOR} GREATER 14 )
+
+ endif ( ${ITK_VERSION_MAJOR} GREATER 3 )
+
+@@ -661,8 +661,8 @@
+ CheckerBoardLib
+ GaussianBlurImageFilter
+ GaussianBlurImageFilterLib
+- DicomToNrrdConverter
+- DicomToNrrdConverterLib
++# DicomToNrrdConverter
++# DicomToNrrdConverterLib
+ DWIDicomLoad
+ DWIDicomLoadLib
+ FreesurferSurfaceSectionExtraction
+diff -urNad slicer-3.4.0~svn10133~/Applications/CLI/DWIDicomLoad.cxx slicer-3.4.0~svn10133/Applications/CLI/DWIDicomLoad.cxx
+--- slicer-3.4.0~svn10133~/Applications/CLI/DWIDicomLoad.cxx 2009-06-10 17:43:25.000000000 -0400
++++ slicer-3.4.0~svn10133/Applications/CLI/DWIDicomLoad.cxx 2009-08-06 15:54:35.000000000 -0400
+@@ -70,7 +70,7 @@
+ #include "vnl/algo/vnl_svd.h"
+
+ #include "itkVectorImage.h"
+-#include "gdcmDictSet.h" // access to dictionary
++//#include "gdcmDictSet.h" // access to dictionary
+ #include "gdcmDict.h" // access to dictionary
+ #include "gdcmDictEntry.h" // access to dictionary
+ #include "gdcmGlobal.h" // access to dictionary
+@@ -86,17 +86,17 @@
+
+
+ // relevant GE private tags
+-const gdcm::DictEntry GEDictBValue( 0x0043, 0x1039, "IS", "1", "B Value of diffusion weighting" );
+-const gdcm::DictEntry GEDictXGradient( 0x0019, 0x10bb, "DS", "1", "X component of gradient direction" );
+-const gdcm::DictEntry GEDictYGradient( 0x0019, 0x10bc, "DS", "1", "Y component of gradient direction" );
+-const gdcm::DictEntry GEDictZGradient( 0x0019, 0x10bd, "DS", "1", "Z component of gradient direction" );
++//const gdcm::DictEntry GEDictBValue( 0x0043, 0x1039, "IS", "1", "B Value of diffusion weighting" );
++//const gdcm::DictEntry GEDictXGradient( 0x0019, 0x10bb, "DS", "1", "X component of gradient direction" );
++//const gdcm::DictEntry GEDictYGradient( 0x0019, 0x10bc, "DS", "1", "Y component of gradient direction" );
++//const gdcm::DictEntry GEDictZGradient( 0x0019, 0x10bd, "DS", "1", "Z component of gradient direction" );
+
+ // relevant Siemens private tags
+-const gdcm::DictEntry SiemensMosiacParameters( 0x0051, 0x100b, "IS", "1", "Mosiac Matrix Size" );
+-const gdcm::DictEntry SiemensDictNMosiac( 0x0019, 0x100a, "US", "1", "Number of Images In Mosaic" );
+-const gdcm::DictEntry SiemensDictBValue( 0x0019, 0x100c, "IS", "1", "B Value of diffusion weighting" );
+-const gdcm::DictEntry SiemensDictDiffusionDirection( 0x0019, 0x100e, "FD", "3", "Diffusion Gradient Direction" );
+-const gdcm::DictEntry SiemensDictDiffusionMatrix( 0x0019, 0x1027, "FD", "6", "Diffusion Matrix" );
++//const gdcm::DictEntry SiemensMosiacParameters( 0x0051, 0x100b, "IS", "1", "Mosiac Matrix Size" );
++//const gdcm::DictEntry SiemensDictNMosiac( 0x0019, 0x100a, "US", "1", "Number of Images In Mosaic" );
++//const gdcm::DictEntry SiemensDictBValue( 0x0019, 0x100c, "IS", "1", "B Value of diffusion weighting" );
++//const gdcm::DictEntry SiemensDictDiffusionDirection( 0x0019, 0x100e, "FD", "3", "Diffusion Gradient Direction" );
++//const gdcm::DictEntry SiemensDictDiffusionMatrix( 0x0019, 0x1027, "FD", "6", "Diffusion Matrix" );
+
+ // add relevant private tags from other vendors
+
+@@ -163,19 +163,19 @@
+ if ( vendor.find("GE") != std::string::npos )
+ {
+ // for GE data
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(GEDictBValue);
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(GEDictXGradient);
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(GEDictYGradient);
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(GEDictZGradient);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(GEDictBValue);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(GEDictXGradient);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(GEDictYGradient);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(GEDictZGradient);
+ }
+ else if( vendor.find("SIEMENS") != std::string::npos )
+ {
+ // for Siemens data
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(SiemensMosiacParameters);
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(SiemensDictNMosiac);
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(SiemensDictBValue);
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(SiemensDictDiffusionDirection);
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(SiemensDictDiffusionMatrix);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(SiemensMosiacParameters);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(SiemensDictNMosiac);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(SiemensDictBValue);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(SiemensDictDiffusionDirection);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(SiemensDictDiffusionMatrix);
+ }
+ else if( vendor.find("PHILIPS") != std::string::npos )
+ {
+diff -urNad slicer-3.4.0~svn10133~/Applications/CLI/DicomToNrrdConverter.cxx slicer-3.4.0~svn10133/Applications/CLI/DicomToNrrdConverter.cxx
+--- slicer-3.4.0~svn10133~/Applications/CLI/DicomToNrrdConverter.cxx 2009-06-10 17:43:25.000000000 -0400
++++ slicer-3.4.0~svn10133/Applications/CLI/DicomToNrrdConverter.cxx 2009-08-06 15:54:35.000000000 -0400
+@@ -67,11 +67,11 @@
+ #include "vnl/algo/vnl_svd.h"
+
+ #include "itkVectorImage.h"
+-#include "gdcmDictSet.h" // access to dictionary
++//#include "gdcmDictSet.h" // access to dictionary
+ #include "gdcmDict.h" // access to dictionary
+ #include "gdcmFile.h" // access to dictionary
+-#include "gdcmDocEntry.h" //internal of gdcm
+-#include "gdcmBinEntry.h" //internal of gdcm
++//#include "gdcmDocEntry.h" //internal of gdcm
++//#include "gdcmBinEntry.h" //internal of gdcm
+ #include "gdcmDictEntry.h" // access to dictionary
+ #include "gdcmGlobal.h" // access to dictionary
+
+@@ -89,25 +89,25 @@
+ namespace {
+
+ // relevant GE private tags
+-const gdcm::DictEntry GEDictBValue( 0x0043, 0x1039, "IS", "1", "B Value of diffusion weighting" );
+-const gdcm::DictEntry GEDictXGradient( 0x0019, 0x10bb, "DS", "1", "X component of gradient direction" );
+-const gdcm::DictEntry GEDictYGradient( 0x0019, 0x10bc, "DS", "1", "Y component of gradient direction" );
+-const gdcm::DictEntry GEDictZGradient( 0x0019, 0x10bd, "DS", "1", "Z component of gradient direction" );
++//const gdcm::DictEntry GEDictBValue( 0x0043, 0x1039, "IS", "1", "B Value of diffusion weighting" );
++//const gdcm::DictEntry GEDictXGradient( 0x0019, 0x10bb, "DS", "1", "X component of gradient direction" );
++//const gdcm::DictEntry GEDictYGradient( 0x0019, 0x10bc, "DS", "1", "Y component of gradient direction" );
++//const gdcm::DictEntry GEDictZGradient( 0x0019, 0x10bd, "DS", "1", "Z component of gradient direction" );
+
+ // relevant Siemens private tags
+-const gdcm::DictEntry SiemensMosiacParameters( 0x0051, 0x100b, "IS", "1", "Mosiac Matrix Size" );
+-const gdcm::DictEntry SiemensDictNMosiac( 0x0019, 0x100a, "US", "1", "Number of Images In Mosaic" );
+-const gdcm::DictEntry SiemensDictBValue( 0x0019, 0x100c, "IS", "1", "B Value of diffusion weighting" );
+-const gdcm::DictEntry SiemensDictDiffusionDirection( 0x0019, 0x100e, "FD", "3", "Diffusion Gradient Direction" );
+-const gdcm::DictEntry SiemensDictDiffusionMatrix( 0x0019, 0x1027, "FD", "6", "Diffusion Matrix" );
+-const gdcm::DictEntry SiemensDictShadowInfo( 0x0029, 0x1010, "OB", "1", "Siemens DWI Info" );
++//const gdcm::DictEntry SiemensMosiacParameters( 0x0051, 0x100b, "IS", "1", "Mosiac Matrix Size" );
++//const gdcm::DictEntry SiemensDictNMosiac( 0x0019, 0x100a, "US", "1", "Number of Images In Mosaic" );
++//const gdcm::DictEntry SiemensDictBValue( 0x0019, 0x100c, "IS", "1", "B Value of diffusion weighting" );
++//const gdcm::DictEntry SiemensDictDiffusionDirection( 0x0019, 0x100e, "FD", "3", "Diffusion Gradient Direction" );
++//const gdcm::DictEntry SiemensDictDiffusionMatrix( 0x0019, 0x1027, "FD", "6", "Diffusion Matrix" );
++//const gdcm::DictEntry SiemensDictShadowInfo( 0x0029, 0x1010, "OB", "1", "Siemens DWI Info" );
+
+ // relevant Philips private tags
+-const gdcm::DictEntry PhilipsDictBValue( 0x2001, 0x1003, "FL", "1", "B Value of diffusion weighting" );
+-const gdcm::DictEntry PhilipsDictDiffusionDirection( 0x2001, 0x1004, "CS", "1", "Diffusion Gradient Direction" );
+-const gdcm::DictEntry PhilipsDictDiffusionDirectionRL( 0x2005, 0x10b0, "FL", "4", "Diffusion Direction R/L" );
+-const gdcm::DictEntry PhilipsDictDiffusionDirectionAP( 0x2005, 0x10b1, "FL", "4", "Diffusion Direction A/P" );
+-const gdcm::DictEntry PhilipsDictDiffusionDirectionFH( 0x2005, 0x10b2, "FL", "4", "Diffusion Direction F/H" );
++//const gdcm::DictEntry PhilipsDictBValue( 0x2001, 0x1003, "FL", "1", "B Value of diffusion weighting" );
++//const gdcm::DictEntry PhilipsDictDiffusionDirection( 0x2001, 0x1004, "CS", "1", "Diffusion Gradient Direction" );
++//const gdcm::DictEntry PhilipsDictDiffusionDirectionRL( 0x2005, 0x10b0, "FL", "4", "Diffusion Direction R/L" );
++//const gdcm::DictEntry PhilipsDictDiffusionDirectionAP( 0x2005, 0x10b1, "FL", "4", "Diffusion Direction A/P" );
++//const gdcm::DictEntry PhilipsDictDiffusionDirectionFH( 0x2005, 0x10b2, "FL", "4", "Diffusion Direction F/H" );
+
+ // add relevant private tags from other vendors
+
+@@ -302,20 +302,20 @@
+ if ( vendor.find("GE") != std::string::npos )
+ {
+ // for GE data
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(GEDictBValue);
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(GEDictXGradient);
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(GEDictYGradient);
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(GEDictZGradient);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(GEDictBValue);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(GEDictXGradient);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(GEDictYGradient);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(GEDictZGradient);
+ }
+ else if( vendor.find("SIEMENS") != std::string::npos )
+ {
+ // for Siemens data
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(SiemensMosiacParameters);
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(SiemensDictNMosiac);
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(SiemensDictBValue);
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(SiemensDictDiffusionDirection);
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(SiemensDictDiffusionMatrix);
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(SiemensDictShadowInfo);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(SiemensMosiacParameters);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(SiemensDictNMosiac);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(SiemensDictBValue);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(SiemensDictDiffusionDirection);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(SiemensDictDiffusionMatrix);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(SiemensDictShadowInfo);
+
+ if ( ImageType.find("MOSAIC") != std::string::npos )
+ {
+@@ -332,11 +332,11 @@
+ ( vendor.find("Philips") != std::string::npos ) )
+ {
+ // for philips data
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(PhilipsDictBValue);
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(PhilipsDictDiffusionDirection);
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(PhilipsDictDiffusionDirectionRL);
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(PhilipsDictDiffusionDirectionAP);
+- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(PhilipsDictDiffusionDirectionFH);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(PhilipsDictBValue);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(PhilipsDictDiffusionDirection);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(PhilipsDictDiffusionDirectionRL);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(PhilipsDictDiffusionDirectionAP);
++// gdcm::Global::GetDicts()->GetDefaultPubDict()->AddEntry(PhilipsDictDiffusionDirectionFH);
+ }
+ else
+ {
+diff -urNad slicer-3.4.0~svn10133~/Applications/CLI/MIDASApplications/DownloadSlicerTutorials/CMakeLists.txt slicer-3.4.0~svn10133/Applications/CLI/MIDASApplications/DownloadSlicerTutorials/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Applications/CLI/MIDASApplications/DownloadSlicerTutorials/CMakeLists.txt 2008-06-24 18:14:09.000000000 -0400
++++ slicer-3.4.0~svn10133/Applications/CLI/MIDASApplications/DownloadSlicerTutorials/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -18,8 +18,8 @@
+
+ #
+ # Find SLICERLIBCURL (slicercurl)
+-find_package(SLICERLIBCURL REQUIRED)
+-include(${SLICERLIBCURL_USE_FILE})
++find_package(CURL REQUIRED)
++include(${CURL_INCLUDE_DIRS})
+
+ #
+ # Find GenerateCLP
+@@ -39,7 +39,7 @@
+ add_executable(DownloadSlicerTutorials ${DownloadSlicerTutorials_SOURCE})
+ slicer3_set_plugins_output_path(DownloadSlicerTutorials)
+ target_link_libraries(DownloadSlicerTutorials
+- ${SLICERLIBCURL_LIBRARIES} ITKIO MRMLIDIO itkzlib)
++ ${CURL_LIBRARIES} ITKIO MRMLIDIO)
+
+ #
+ # Generate shared loadable slicer module
+@@ -49,7 +49,7 @@
+ COMPILE_FLAGS "-Dmain=ModuleEntryPoint")
+ slicer3_set_plugins_output_path(DownloadSlicerTutorialsModule)
+ target_link_libraries(DownloadSlicerTutorialsModule
+- ${SLICERLIBCURL_LIBRARIES} ITKIO MRMLIDIO itkzlib)
++ ${CURL_LIBRARIES} ITKIO MRMLIDIO)
+
+ #
+ # Move exec and module to where Slicer can find them
+diff -urNad slicer-3.4.0~svn10133~/Applications/CLI/MIDASApplications/DownloadSlicerTutorials/DownloadSlicerTutorials.cxx slicer-3.4.0~svn10133/Applications/CLI/MIDASApplications/DownloadSlicerTutorials/DownloadSlicerTutorials.cxx
+--- slicer-3.4.0~svn10133~/Applications/CLI/MIDASApplications/DownloadSlicerTutorials/DownloadSlicerTutorials.cxx 2009-04-10 13:33:12.000000000 -0400
++++ slicer-3.4.0~svn10133/Applications/CLI/MIDASApplications/DownloadSlicerTutorials/DownloadSlicerTutorials.cxx 2009-08-06 15:54:35.000000000 -0400
+@@ -3,7 +3,7 @@
+ #endif
+
+ // Includes
+-#include <slicerlibcurl/slicerlibcurl.h>
++#include <curl/curl.h>
+ #include <itksys/SystemTools.hxx>
+ #include <itksys/Process.h>
+ #include <math.h>
+diff -urNad slicer-3.4.0~svn10133~/Applications/GUI/CMakeLists.txt slicer-3.4.0~svn10133/Applications/GUI/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Applications/GUI/CMakeLists.txt 2009-02-11 17:48:16.000000000 -0500
++++ slicer-3.4.0~svn10133/Applications/GUI/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -45,7 +45,7 @@
+ set(Slicer3_FORWARD_PATH_BUILD
+ "\"${Slicer3_FORWARD_DIR_BUILD}\",\"${VTK_DIR}/bin\",\"${KWWidgets_RUNTIME_DIRS}\",\"${ITK_DIR}/bin\",\"${Teem_DIR}/bin\",\"${TCL_DIR}/bin\",\"${INCR_TCL_LIBRARY_PATH}\",\"${INCR_TK_LIBRARY_PATH}\",\"${OPENGL_gl_LIBRARY_PATH}\"")
+ set(Slicer3_FORWARD_PATH_INSTALL
+- "\"../${Slicer3_INSTALL_LIB_DIR}\",\"../lib/vtk-${VTK_MAJOR_VERSION}.${VTK_MINOR_VERSION}\",\"../lib/KWWidgets\",\"../lib/InsightToolkit\",\"../lib/Teem-${Teem_VERSION_MAJOR}.${Teem_VERSION_MINOR}\",\"../lib/TclTk/lib\",\"../lib/TclTk/lib/itcl${INCR_TCL_VERSION_DOT}\",\"../lib/TclTk/lib/itk${INCR_TCL_VERSION_DOT}\",\"../lib/FreeSurfer\",\"../lib/IGT\",\"../lib/ITKCommandIO\",\"../lib/LoadableModule\",\"../lib/MGHImageIO\",\"../lib/MRML\",\"../lib/ModuleDescriptionParser\",\"../lib/MRMLIDImageIO\",\"../lib/Qdec\",\"../lib/RemoteIO\",\"../lib/SlicerIO\",\"../lib/tclap\",\"../lib/vtkITK\",\"../lib/vtkTeem\"")
++ "\"../${Slicer3_INSTALL_LIB_DIR}\",\"../lib/vtk-${VTK_MAJOR_VERSION}.${VTK_MINOR_VERSION}\",\"../lib/KWWidgets\",\"../lib/InsightToolkit\"")
+ if(Slicer3_BUILD_MODULES)
+ set(Slicer3_FORWARD_PATH_BUILD
+ "${Slicer3_FORWARD_PATH_BUILD},\"${Slicer3_HOME}/${Slicer3_INSTALL_MODULES_BIN_DIR}\"")
+@@ -95,8 +95,10 @@
+ # --------------------------------------------------------------------------
+ # Find SLICERLIBCURL (slicercurl)
+ #
+-find_package(SLICERLIBCURL REQUIRED)
+-include(${SLICERLIBCURL_USE_FILE})
++#find_package(SLICERLIBCURL REQUIRED)
++#include(${SLICERLIBCURL_USE_FILE})
++find_package(CURL REQUIRED)
++include(${CURL_INCLUDE_DIRS})
+
+ # --------------------------------------------------------------------------
+ # Include dirs
+diff -urNad slicer-3.4.0~svn10133~/Applications/GUI/Slicer3.cxx slicer-3.4.0~svn10133/Applications/GUI/Slicer3.cxx
+--- slicer-3.4.0~svn10133~/Applications/GUI/Slicer3.cxx 2009-07-31 15:13:16.000000000 -0400
++++ slicer-3.4.0~svn10133/Applications/GUI/Slicer3.cxx 2009-08-06 15:54:35.000000000 -0400
+@@ -411,7 +411,7 @@
+ }
+
+ std::string tclEnv = "TCL_LIBRARY=";
+- tclEnv += slicerHome + "/lib/TclTk/lib/tcl" + Slicer3_TCL_TK_MAJOR_VERSION + "." + Slicer3_TCL_TK_MINOR_VERSION;
++ tclEnv += slicerHome + "/lib/tcl" + Slicer3_TCL_TK_MAJOR_VERSION + "." + Slicer3_TCL_TK_MINOR_VERSION;
+ vtkKWApplication::PutEnv(const_cast <char *> (tclEnv.c_str()));
+
+ // ITK factories dir
+diff -urNad slicer-3.4.0~svn10133~/Base/CLI/CMakeLists.txt slicer-3.4.0~svn10133/Base/CLI/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Base/CLI/CMakeLists.txt 2008-05-20 03:31:33.000000000 -0400
++++ slicer-3.4.0~svn10133/Base/CLI/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -58,6 +58,11 @@
+ slicer3_get_persistent_property(Slicer3_Base_LIBRARIES tmp)
+ slicer3_set_persistent_property(Slicer3_Base_LIBRARIES ${tmp} SlicerBaseCLI)
+
++SET_TARGET_PROPERTIES(SlicerBaseCLI PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS SlicerBaseCLI
+ RUNTIME DESTINATION ${Slicer3_INSTALL_BIN_DIR} COMPONENT RuntimeLibraries
+ LIBRARY DESTINATION ${Slicer3_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
+diff -urNad slicer-3.4.0~svn10133~/Base/GUI/CMakeLists.txt slicer-3.4.0~svn10133/Base/GUI/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Base/GUI/CMakeLists.txt 2009-03-16 11:34:28.000000000 -0400
++++ slicer-3.4.0~svn10133/Base/GUI/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -177,6 +177,11 @@
+ RemoteIO
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ slicer3_get_persistent_property(Slicer3_Base_LIBRARIES tmp)
+ slicer3_set_persistent_property(Slicer3_Base_LIBRARIES ${tmp} ${lib_name})
+
+diff -urNad slicer-3.4.0~svn10133~/Base/Logic/CMakeLists.txt slicer-3.4.0~svn10133/Base/Logic/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Base/Logic/CMakeLists.txt 2008-11-05 14:25:28.000000000 -0500
++++ slicer-3.4.0~svn10133/Base/Logic/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -115,6 +115,11 @@
+ slicer3_get_persistent_property(Slicer3_Base_LIBRARIES tmp)
+ slicer3_set_persistent_property(Slicer3_Base_LIBRARIES ${tmp} ${lib_name})
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION ${Slicer3_INSTALL_BIN_DIR} COMPONENT RuntimeLibraries
+ LIBRARY DESTINATION ${Slicer3_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
+diff -urNad slicer-3.4.0~svn10133~/CMakeLists.txt slicer-3.4.0~svn10133/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/CMakeLists.txt 2009-04-22 19:00:01.000000000 -0400
++++ slicer-3.4.0~svn10133/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -27,6 +27,11 @@
+
+ set(Slicer3_HOME "${Slicer3_BINARY_DIR}")
+
++# TCL
++find_package(TCL REQUIRED)
++
++
++
+ #-----------------------------------------------------------------------------
+ # Disable the warnings that DevStudio 2005 emits wrt to sprintf, strcpu, etc.
+ #
+@@ -60,6 +65,9 @@
+ set(Slicer3_VERSION "${Slicer3_VERSION_MAJOR}.${Slicer3_VERSION_MINOR}")
+ set(Slicer3_VERSION_FULL "${Slicer3_VERSION}.${Slicer3_VERSION_PATCH}")
+
++set ( Slicer3_SHAREDLIB_VERSION ${Slicer3_VERSION_FULL} )
++string ( REGEX MATCH "^[0-9]+" Slicer3_SHAREDLIB_SOVERSION ${Slicer3_SHAREDLIB_VERSION} )
++
+ #-----------------------------------------------------------------------------
+ # Build shared lib by default
+ #
+@@ -159,10 +167,15 @@
+ include(${Teem_USE_FILE})
+
+ ## SlicerLibCurl
+-find_package(SLICERLIBCURL REQUIRED)
+-if(SLICERLIBCURL_FOUND)
+- include(${SLICERLIBCURL_USE_FILE})
+-endif(SLICERLIBCURL_FOUND)
++#find_package(SLICERLIBCURL REQUIRED)
++#if(SLICERLIBCURL_FOUND)
++# include(${SLICERLIBCURL_USE_FILE})
++#endif(SLICERLIBCURL_FOUND)
++find_package(CURL REQUIRED)
++if(CURL_FOUND)
++ # Add include directories needed to use CURL.
++ include_directories(${CURL_INCLUDE_DIRS})
++endif(CURL_FOUND)
+
+ ## BatchMake
+ option(Slicer3_USE_BatchMake "Build Slicer3 with BatchMake support." OFF)
+@@ -178,7 +191,7 @@
+ option(Slicer3_USE_OPENIGTLINK "Build Slicer3 with OpenIGTLink support." OFF)
+ if(Slicer3_USE_OPENIGTLINK)
+ find_package(OpenIGTLink REQUIRED)
+- include(${OpenIGTLink_USE_FILE})
++ include_directories(${OpenIGTLink_INCLUDE_DIRS})
+ endif(Slicer3_USE_OPENIGTLINK)
+
+ #-----------------------------------------------------------------------------
+diff -urNad slicer-3.4.0~svn10133~/Libs/CMakeLists.txt slicer-3.4.0~svn10133/Libs/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Libs/CMakeLists.txt 2008-11-05 18:39:51.000000000 -0500
++++ slicer-3.4.0~svn10133/Libs/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -1,7 +1,6 @@
+ project(SlicerLibs)
+
+ set(dirs
+- tclap
+ ModuleDescriptionParser
+ GenerateCLP
+ LoadableModule
+diff -urNad slicer-3.4.0~svn10133~/Libs/FreeSurfer/CMakeLists.txt slicer-3.4.0~svn10133/Libs/FreeSurfer/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Libs/FreeSurfer/CMakeLists.txt 2008-05-21 19:25:36.000000000 -0400
++++ slicer-3.4.0~svn10133/Libs/FreeSurfer/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -68,9 +68,14 @@
+ vtkIOTCL
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Libs/GenerateCLP/CMakeLists.txt slicer-3.4.0~svn10133/Libs/GenerateCLP/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Libs/GenerateCLP/CMakeLists.txt 2008-05-27 18:36:34.000000000 -0400
++++ slicer-3.4.0~svn10133/Libs/GenerateCLP/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -11,10 +11,10 @@
+ include(${ModuleDescriptionParser_USE_FILE})
+ endif(ModuleDescriptionParser_FOUND)
+
+-find_package(TCLAP REQUIRED)
+-if(TCLAP_FOUND)
+- include(${TCLAP_USE_FILE})
+-endif(TCLAP_FOUND)
++#find_package(TCLAP REQUIRED)
++#if(TCLAP_FOUND)
++# include(${TCLAP_USE_FILE})
++#endif(TCLAP_FOUND)
+
+ find_package(ITK REQUIRED)
+ if(ITK_FOUND)
+diff -urNad slicer-3.4.0~svn10133~/Libs/GenerateCLP/UseGenerateCLP.cmake.in slicer-3.4.0~svn10133/Libs/GenerateCLP/UseGenerateCLP.cmake.in
+--- slicer-3.4.0~svn10133~/Libs/GenerateCLP/UseGenerateCLP.cmake.in 2008-05-26 11:07:36.000000000 -0400
++++ slicer-3.4.0~svn10133/Libs/GenerateCLP/UseGenerateCLP.cmake.in 2009-08-06 15:54:35.000000000 -0400
+@@ -5,10 +5,10 @@
+ message(FATAL_ERROR "Cannot build without ITK. Please set ITK_DIR.")
+ endif(ITK_FOUND)
+
+-find_package(TCLAP REQUIRED)
+-if(TCLAP_FOUND)
+- include(${TCLAP_USE_FILE})
+-endif(TCLAP_FOUND)
++#find_package(TCLAP REQUIRED)
++#if(TCLAP_FOUND)
++# include(${TCLAP_USE_FILE})
++#endif(TCLAP_FOUND)
+
+ find_package(ModuleDescriptionParser REQUIRED)
+ if(ModuleDescriptionParser_FOUND)
+diff -urNad slicer-3.4.0~svn10133~/Libs/IGT/CMakeLists.txt slicer-3.4.0~svn10133/Libs/IGT/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Libs/IGT/CMakeLists.txt 2008-05-21 19:25:36.000000000 -0400
++++ slicer-3.4.0~svn10133/Libs/IGT/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -139,9 +139,14 @@
+ ${TRACKING_INTERFACE_LIB}
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Libs/ITKCommandIO/CMakeLists.txt slicer-3.4.0~svn10133/Libs/ITKCommandIO/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Libs/ITKCommandIO/CMakeLists.txt 2008-05-28 00:38:39.000000000 -0400
++++ slicer-3.4.0~svn10133/Libs/ITKCommandIO/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -71,9 +71,14 @@
+ ITKIO
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Libs/LoadableModule/CMakeLists.txt slicer-3.4.0~svn10133/Libs/LoadableModule/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Libs/LoadableModule/CMakeLists.txt 2009-02-11 17:48:16.000000000 -0500
++++ slicer-3.4.0~svn10133/Libs/LoadableModule/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -116,9 +116,14 @@
+
+ target_link_libraries(${lib_name} ${link_libs})
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Libs/MGHImageIO/CMakeLists.txt slicer-3.4.0~svn10133/Libs/MGHImageIO/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Libs/MGHImageIO/CMakeLists.txt 2008-05-28 00:38:39.000000000 -0400
++++ slicer-3.4.0~svn10133/Libs/MGHImageIO/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -59,9 +59,14 @@
+ ITKIO
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Libs/MRML/CMakeLists.txt slicer-3.4.0~svn10133/Libs/MRML/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Libs/MRML/CMakeLists.txt 2009-02-27 17:28:47.000000000 -0500
++++ slicer-3.4.0~svn10133/Libs/MRML/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -237,9 +237,14 @@
+ endif(MRML_USE_vtkTeem)
+ endif(MRML_USE_Teem)
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Libs/MRMLIDImageIO/CMakeLists.txt slicer-3.4.0~svn10133/Libs/MRMLIDImageIO/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Libs/MRMLIDImageIO/CMakeLists.txt 2008-05-28 00:38:39.000000000 -0400
++++ slicer-3.4.0~svn10133/Libs/MRMLIDImageIO/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -78,9 +78,14 @@
+ vtkImaging
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Libs/ModuleDescriptionParser/CMakeLists.txt slicer-3.4.0~svn10133/Libs/ModuleDescriptionParser/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Libs/ModuleDescriptionParser/CMakeLists.txt 2009-02-11 17:48:16.000000000 -0500
++++ slicer-3.4.0~svn10133/Libs/ModuleDescriptionParser/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -120,9 +120,14 @@
+
+ target_link_libraries(${lib_name} ${link_libs})
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Libs/Qdec/CMakeLists.txt slicer-3.4.0~svn10133/Libs/Qdec/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Libs/Qdec/CMakeLists.txt 2008-05-31 13:31:15.000000000 -0400
++++ slicer-3.4.0~svn10133/Libs/Qdec/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -76,9 +76,14 @@
+ # vtkIOTCL
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Libs/Qdec/QdecContrast.cpp slicer-3.4.0~svn10133/Libs/Qdec/QdecContrast.cpp
+--- slicer-3.4.0~svn10133~/Libs/Qdec/QdecContrast.cpp 2009-05-19 18:25:04.000000000 -0400
++++ slicer-3.4.0~svn10133/Libs/Qdec/QdecContrast.cpp 2009-08-06 15:54:35.000000000 -0400
+@@ -16,6 +16,7 @@
+ #include <errno.h>
+ #include <sys/stat.h>
+ #include <cassert>
++#include <cstdio>
+
+ #include "QdecContrast.h"
+
+diff -urNad slicer-3.4.0~svn10133~/Libs/RemoteIO/CMakeLists.txt slicer-3.4.0~svn10133/Libs/RemoteIO/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Libs/RemoteIO/CMakeLists.txt 2008-10-10 10:41:24.000000000 -0400
++++ slicer-3.4.0~svn10133/Libs/RemoteIO/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -11,8 +11,11 @@
+ find_package(ITK REQUIRED)
+ include(${ITK_USE_FILE})
+
+-find_package(SLICERLIBCURL REQUIRED)
+-include(${SLICERLIBCURL_USE_FILE})
++find_package(CURL REQUIRED)
++if(CURL_FOUND)
++ # Add include directories needed to use CURL.
++ include_directories(${CURL_INCLUDE_DIRS})
++endif(CURL_FOUND)
+
+ # Disable MSVC 8 warnings
+ if(WIN32)
+@@ -100,13 +103,18 @@
+ vtkIOTCL
+ vtkCommonTCL
+ itksys
+- ${SLICERLIBCURL_LIBRARIES}
++ ${CURL_LIBRARIES}
+ MRML
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Libs/RemoteIO/vtkHTTPHandler.h slicer-3.4.0~svn10133/Libs/RemoteIO/vtkHTTPHandler.h
+--- slicer-3.4.0~svn10133~/Libs/RemoteIO/vtkHTTPHandler.h 2008-10-10 10:41:24.000000000 -0400
++++ slicer-3.4.0~svn10133/Libs/RemoteIO/vtkHTTPHandler.h 2009-08-06 15:54:35.000000000 -0400
+@@ -5,7 +5,7 @@
+ #pragma warning ( disable : 4786 )
+ #endif
+
+-#include <slicerlibcurl/slicerlibcurl.h>
++#include <curl/curl.h>
+
+ #include <vtkRemoteIOConfigure.h>
+ #include "vtkRemoteIO.h"
+diff -urNad slicer-3.4.0~svn10133~/Libs/SlicerIO/CMakeLists.txt slicer-3.4.0~svn10133/Libs/SlicerIO/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Libs/SlicerIO/CMakeLists.txt 2008-05-21 19:25:36.000000000 -0400
++++ slicer-3.4.0~svn10133/Libs/SlicerIO/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -48,7 +48,7 @@
+
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Libs/vtkITK/CMakeLists.txt slicer-3.4.0~svn10133/Libs/vtkITK/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Libs/vtkITK/CMakeLists.txt 2009-03-25 19:01:37.000000000 -0400
++++ slicer-3.4.0~svn10133/Libs/vtkITK/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -111,9 +111,14 @@
+ ITKDICOMParser
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Libs/vtkITK/vtkITKArchetypeImageSeriesReader.h slicer-3.4.0~svn10133/Libs/vtkITK/vtkITKArchetypeImageSeriesReader.h
+--- slicer-3.4.0~svn10133~/Libs/vtkITK/vtkITKArchetypeImageSeriesReader.h 2009-04-03 07:35:43.000000000 -0400
++++ slicer-3.4.0~svn10133/Libs/vtkITK/vtkITKArchetypeImageSeriesReader.h 2009-08-06 15:54:35.000000000 -0400
+@@ -34,7 +34,7 @@
+ #include <string>
+
+ #include "itkMetaDataDictionary.h"
+-#include "gdcmDictSet.h" // access to dictionary
++//#include "gdcmDictSet.h" // access to dictionary
+ #include "gdcmDict.h" // access to dictionary
+ #include "gdcmDictEntry.h" // access to dictionary
+ #include "gdcmGlobal.h" // access to dictionary
+diff -urNad slicer-3.4.0~svn10133~/Libs/vtkTeem/CMakeLists.txt slicer-3.4.0~svn10133/Libs/vtkTeem/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Libs/vtkTeem/CMakeLists.txt 2008-11-05 18:39:51.000000000 -0500
++++ slicer-3.4.0~svn10133/Libs/vtkTeem/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -111,9 +111,14 @@
+ ${Teem_LIBRARIES}
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Modules/CMakeLists.txt slicer-3.4.0~svn10133/Modules/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/CMakeLists.txt 2009-04-30 17:12:13.000000000 -0400
++++ slicer-3.4.0~svn10133/Modules/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -74,7 +74,7 @@
+ subdirs(
+ OpenIGTLinkIF
+ NeuroNav
+- ProstateNav
++# ProstateNav
+ )
+ endif(Slicer3_USE_OPENIGTLINK)
+
+diff -urNad slicer-3.4.0~svn10133~/Modules/ChangeTracker/CMakeLists.txt slicer-3.4.0~svn10133/Modules/ChangeTracker/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/ChangeTracker/CMakeLists.txt 2009-04-30 13:59:22.000000000 -0400
++++ slicer-3.4.0~svn10133/Modules/ChangeTracker/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -40,8 +40,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkChangeTrackerConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+@@ -114,6 +112,11 @@
+ )
+ slicer3_set_modules_output_path(${lib_name})
+
++set_target_properties(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ target_link_libraries(${lib_name}
+ ${Slicer3_Libs_LIBRARIES}
+ ${Slicer3_Base_LIBRARIES}
+diff -urNad slicer-3.4.0~svn10133~/Modules/CommandLineModule/CMakeLists.txt slicer-3.4.0~svn10133/Modules/CommandLineModule/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/CommandLineModule/CMakeLists.txt 2009-02-11 17:48:16.000000000 -0500
++++ slicer-3.4.0~svn10133/Modules/CommandLineModule/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -31,8 +31,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkCommandLineModuleConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+@@ -86,6 +84,11 @@
+ ${ITK_LIBRARIES}
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ # Python settings
+
+ if(Slicer3_USE_PYTHON)
+diff -urNad slicer-3.4.0~svn10133~/Modules/EMSegment/CMakeLists.txt slicer-3.4.0~svn10133/Modules/EMSegment/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/EMSegment/CMakeLists.txt 2008-05-27 18:44:06.000000000 -0400
++++ slicer-3.4.0~svn10133/Modules/EMSegment/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -44,8 +44,6 @@
+ "${CMAKE_CURRENT_SOURCE_DIR}/Registration/*.h"
+ )
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkEMSegmentConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+@@ -176,6 +174,11 @@
+ Volumes
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ slicer3_install_modules(${lib_name})
+
+ # --------------------------------------------------------------------------
+diff -urNad slicer-3.4.0~svn10133~/Modules/FetchMI/CMakeLists.txt slicer-3.4.0~svn10133/Modules/FetchMI/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/FetchMI/CMakeLists.txt 2009-02-26 14:03:13.000000000 -0500
++++ slicer-3.4.0~svn10133/Modules/FetchMI/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -33,8 +33,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkFetchMIConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Modules/GradientAnisotropicDiffusionFilter/CMakeLists.txt slicer-3.4.0~svn10133/Modules/GradientAnisotropicDiffusionFilter/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/GradientAnisotropicDiffusionFilter/CMakeLists.txt 2008-11-21 00:20:51.000000000 -0500
++++ slicer-3.4.0~svn10133/Modules/GradientAnisotropicDiffusionFilter/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -31,8 +31,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkGradientAnisotropicDiffusionFilterConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Modules/Meshing/Adapter/CMakeLists.txt slicer-3.4.0~svn10133/Modules/Meshing/Adapter/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/Meshing/Adapter/CMakeLists.txt 2008-12-11 12:55:09.000000000 -0500
++++ slicer-3.4.0~svn10133/Modules/Meshing/Adapter/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -58,6 +58,11 @@
+ ITKAlgorithms
+ )
+
++set_target_properties(${LIB_NAME} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${LIB_NAME}
+ RUNTIME DESTINATION ${Slicer3_INSTALL_BIN_DIR} COMPONENT RuntimeLibraries
+ LIBRARY DESTINATION ${Slicer3_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
+diff -urNad slicer-3.4.0~svn10133~/Modules/Meshing/BuildingBlock/CMakeLists.txt slicer-3.4.0~svn10133/Modules/Meshing/BuildingBlock/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/Meshing/BuildingBlock/CMakeLists.txt 2008-12-11 12:55:09.000000000 -0500
++++ slicer-3.4.0~svn10133/Modules/Meshing/BuildingBlock/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -173,6 +173,11 @@
+ ITKIO
+ ITKAlgorithms
+ )
++
++SET_TARGET_PROPERTIES(${LIB_NAME} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
+
+
+ #CONFIGURE_FILE(
+diff -urNad slicer-3.4.0~svn10133~/Modules/Meshing/Common/CMakeLists.txt slicer-3.4.0~svn10133/Modules/Meshing/Common/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/Meshing/Common/CMakeLists.txt 2008-12-24 10:07:19.000000000 -0500
++++ slicer-3.4.0~svn10133/Modules/Meshing/Common/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -156,6 +156,12 @@
+ MRML
+ )
+
++SET_TARGET_PROPERTIES(${LIB_NAME} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
++
+ install(TARGETS ${LIB_NAME}
+ RUNTIME DESTINATION ${Slicer3_INSTALL_BIN_DIR} COMPONENT RuntimeLibraries
+ LIBRARY DESTINATION ${Slicer3_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
+diff -urNad slicer-3.4.0~svn10133~/Modules/Meshing/Filter/CMakeLists.txt slicer-3.4.0~svn10133/Modules/Meshing/Filter/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/Meshing/Filter/CMakeLists.txt 2008-12-24 10:07:19.000000000 -0500
++++ slicer-3.4.0~svn10133/Modules/Meshing/Filter/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -102,6 +102,11 @@
+ ${KWWidgets_LIBRARIES}
+ )
+
++SET_TARGET_PROPERTIES(${LIB_NAME} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${LIB_NAME}
+ RUNTIME DESTINATION ${Slicer3_INSTALL_BIN_DIR} COMPONENT RuntimeLibraries
+ LIBRARY DESTINATION ${Slicer3_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
+diff -urNad slicer-3.4.0~svn10133~/Modules/Meshing/IA_FEMesh/CMakeLists.txt slicer-3.4.0~svn10133/Modules/Meshing/IA_FEMesh/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/Meshing/IA_FEMesh/CMakeLists.txt 2008-12-10 09:36:48.000000000 -0500
++++ slicer-3.4.0~svn10133/Modules/Meshing/IA_FEMesh/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -44,8 +44,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkIA_FEMeshConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Modules/Meshing/IO/CMakeLists.txt slicer-3.4.0~svn10133/Modules/Meshing/IO/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/Meshing/IO/CMakeLists.txt 2008-12-11 12:55:09.000000000 -0500
++++ slicer-3.4.0~svn10133/Modules/Meshing/IO/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -60,6 +60,11 @@
+ vtkRendering
+ )
+
++SET_TARGET_PROPERTIES(${LIB_NAME} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${LIB_NAME}
+ RUNTIME DESTINATION ${Slicer3_INSTALL_BIN_DIR} COMPONENT RuntimeLibraries
+ LIBRARY DESTINATION ${Slicer3_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
+diff -urNad slicer-3.4.0~svn10133~/Modules/Meshing/Widgets/CMakeLists.txt slicer-3.4.0~svn10133/Modules/Meshing/Widgets/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/Meshing/Widgets/CMakeLists.txt 2008-12-11 12:55:09.000000000 -0500
++++ slicer-3.4.0~svn10133/Modules/Meshing/Widgets/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -107,6 +107,11 @@
+ mimxFilter
+ mimxCommon
+ )
++
++SET_TARGET_PROPERTIES(${LIB_NAME} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
+
+ install(TARGETS ${LIB_NAME}
+ RUNTIME DESTINATION ${Slicer3_INSTALL_BIN_DIR} COMPONENT RuntimeLibraries
+diff -urNad slicer-3.4.0~svn10133~/Modules/NeuroNav/CMakeLists.txt slicer-3.4.0~svn10133/Modules/NeuroNav/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/NeuroNav/CMakeLists.txt 2008-09-12 13:39:46.000000000 -0400
++++ slicer-3.4.0~svn10133/Modules/NeuroNav/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -40,8 +40,6 @@
+ "${CMAKE_CURRENT_SOURCE_DIR}/*.h"
+ )
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkNeuroNavConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Modules/OpenIGTLinkIF/CMakeLists.txt slicer-3.4.0~svn10133/Modules/OpenIGTLinkIF/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/OpenIGTLinkIF/CMakeLists.txt 2008-12-09 16:36:04.000000000 -0500
++++ slicer-3.4.0~svn10133/Modules/OpenIGTLinkIF/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -40,8 +40,6 @@
+ )
+
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkOpenIGTLinkIFConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+@@ -84,6 +82,10 @@
+ )
+ slicer3_set_modules_output_path(${lib_name})
+
++set_target_properties(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
+
+ target_link_libraries(${lib_name}
+ ${Slicer3_Libs_LIBRARIES}
+diff -urNad slicer-3.4.0~svn10133~/Modules/ProstateNav/CMakeLists.txt slicer-3.4.0~svn10133/Modules/ProstateNav/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/ProstateNav/CMakeLists.txt 2009-02-05 22:44:59.000000000 -0500
++++ slicer-3.4.0~svn10133/Modules/ProstateNav/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -17,12 +17,16 @@
+
+ # --------------------------------------------------------------------------
+ # Include dirs
++#find_package(OpenIGTLink REQUIRED)
++#include_directories(${OpenIGTLink_INCLUDE_DIRS})
+
+
+ #
+ # Include dirs
+ #
+
++include_directories( /usr/include/newmat )
++
+
+ include_directories(
+ ${CMAKE_CURRENT_SOURCE_DIR}
+@@ -82,32 +86,9 @@
+ ${CMAKE_CURRENT_SOURCE_DIR}/igtlHeaderMessage.cxx
+ ${CMAKE_CURRENT_SOURCE_DIR}/igtlMoveToMessage.cxx
+ ${CMAKE_CURRENT_SOURCE_DIR}/igtlSetZFrameMessage.cxx
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmat9.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmatrm.cpp
+ ${CMAKE_CURRENT_SOURCE_DIR}/newmat/nm_misc.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/bandmat.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmat1.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/solution.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/cholesky.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/hholder.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmat2.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmatex.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmat3.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/sort.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/evalue.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/jacobi.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmat4.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/submat.cpp
+ ${CMAKE_CURRENT_SOURCE_DIR}/newmat/example.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmat5.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/svd.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/myexcept.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmat6.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmatnl.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/fft.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmat7.cpp
+ ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newfft.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmat8.cpp
+ ${CMAKE_CURRENT_SOURCE_DIR}/newmat/ZLinAlg.cxx
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Modules/ProstateNav/Wizard/vtkProstateNavCalibrationStep.h slicer-3.4.0~svn10133/Modules/ProstateNav/Wizard/vtkProstateNavCalibrationStep.h
+--- slicer-3.4.0~svn10133~/Modules/ProstateNav/Wizard/vtkProstateNavCalibrationStep.h 2009-02-04 14:15:57.000000000 -0500
++++ slicer-3.4.0~svn10133/Modules/ProstateNav/Wizard/vtkProstateNavCalibrationStep.h 2009-08-06 15:54:35.000000000 -0400
+@@ -37,6 +37,13 @@
+ class VTK_PROSTATENAV_EXPORT vtkProstateNavCalibrationStep : public vtkProstateNavStep
+ {
+ public:
++ //BTX
++ typedef NEWMAT::Matrix Matrix;
++ typedef NEWMAT::Real Real;
++ typedef NEWMAT::FFT2 FFT2;
++ typedef NEWMAT::FFT2I FFT2I;
++ //ETX
++
+ static vtkProstateNavCalibrationStep *New();
+ vtkTypeRevisionMacro(vtkProstateNavCalibrationStep,vtkProstateNavStep);
+ void PrintSelf(ostream& os, vtkIndent indent);
+diff -urNad slicer-3.4.0~svn10133~/Modules/QdecModule/CMakeLists.txt slicer-3.4.0~svn10133/Modules/QdecModule/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/QdecModule/CMakeLists.txt 2008-11-21 00:20:51.000000000 -0500
++++ slicer-3.4.0~svn10133/Modules/QdecModule/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -31,8 +31,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkQdecModuleConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+@@ -73,6 +71,11 @@
+ ${ITK_LIBRARIES}
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ slicer3_install_modules(${lib_name})
+
+ # --------------------------------------------------------------------------
+diff -urNad slicer-3.4.0~svn10133~/Modules/QueryAtlas/CMakeLists.txt slicer-3.4.0~svn10133/Modules/QueryAtlas/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/QueryAtlas/CMakeLists.txt 2008-11-21 00:20:51.000000000 -0500
++++ slicer-3.4.0~svn10133/Modules/QueryAtlas/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -42,14 +42,11 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkQueryAtlasConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/Resources/*.h")
+ install(FILES
+- ${headers}
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME}/Resources COMPONENT Development
+ )
+
+@@ -204,14 +201,14 @@
+ OntologyViz/extjars/prefuse.jar
+ )
+
+-foreach(file ${ONTOVIZFILES})
+- configure_file(
+- ${CMAKE_CURRENT_SOURCE_DIR}/${file}
+- ${CMAKE_BINARY_DIR}/${Slicer3_INSTALL_MODULES_LIB_DIR}/${PROJECT_NAME}/${file}
+- COPYONLY)
+- get_filename_component(path "${file}" PATH)
+- install(FILES
+- ${file}
+- DESTINATION ${Slicer3_INSTALL_MODULES_LIB_DIR}/${PROJECT_NAME}/${path} COMPONENT Development
+- )
+-endforeach(file)
++#foreach(file ${ONTOVIZFILES})
++# configure_file(
++# ${CMAKE_CURRENT_SOURCE_DIR}/${file}
++# ${CMAKE_BINARY_DIR}/${Slicer3_INSTALL_MODULES_LIB_DIR}/${PROJECT_NAME}/${file}
++# COPYONLY)
++# get_filename_component(path "${file}" PATH)
++# install(FILES
++# ${file}
++# DESTINATION ${Slicer3_INSTALL_MODULES_LIB_DIR}/${PROJECT_NAME}/${path} COMPONENT Development
++# )
++#endforeach(file)
+diff -urNad slicer-3.4.0~svn10133~/Modules/RealTimeImaging/CMakeLists.txt slicer-3.4.0~svn10133/Modules/RealTimeImaging/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/RealTimeImaging/CMakeLists.txt 2008-05-27 18:44:06.000000000 -0400
++++ slicer-3.4.0~svn10133/Modules/RealTimeImaging/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -32,7 +32,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+ "${CMAKE_CURRENT_BINARY_DIR}/vtkRealTimeImagingConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+diff -urNad slicer-3.4.0~svn10133~/Modules/ScriptedModule/CMakeLists.txt slicer-3.4.0~svn10133/Modules/ScriptedModule/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/ScriptedModule/CMakeLists.txt 2009-02-11 17:48:16.000000000 -0500
++++ slicer-3.4.0~svn10133/Modules/ScriptedModule/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -31,8 +31,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkScriptedModuleConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+@@ -68,6 +66,11 @@
+ ${ITK_LIBRARIES}
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ # Python settings
+
+ if(Slicer3_USE_PYTHON)
+diff -urNad slicer-3.4.0~svn10133~/Modules/SlicerDaemon/CMakeLists.txt slicer-3.4.0~svn10133/Modules/SlicerDaemon/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/SlicerDaemon/CMakeLists.txt 2008-12-08 04:31:27.000000000 -0500
++++ slicer-3.4.0~svn10133/Modules/SlicerDaemon/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -31,8 +31,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkSlicerDaemonConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+@@ -69,6 +67,11 @@
+ ${ITK_LIBRARIES}
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ slicer3_install_modules(${lib_name})
+
+ # --------------------------------------------------------------------------
+diff -urNad slicer-3.4.0~svn10133~/Modules/SlicerWelcome/CMakeLists.txt slicer-3.4.0~svn10133/Modules/SlicerWelcome/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/SlicerWelcome/CMakeLists.txt 2009-03-27 15:12:39.000000000 -0400
++++ slicer-3.4.0~svn10133/Modules/SlicerWelcome/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -37,8 +37,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkSlicerWelcomeConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Modules/Statistics/LabelStatistics/CMakeLists.txt slicer-3.4.0~svn10133/Modules/Statistics/LabelStatistics/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/Statistics/LabelStatistics/CMakeLists.txt 2008-05-27 18:44:06.000000000 -0400
++++ slicer-3.4.0~svn10133/Modules/Statistics/LabelStatistics/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -31,8 +31,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkLabelStatisticsConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Modules/Tractography/Display/CMakeLists.txt slicer-3.4.0~svn10133/Modules/Tractography/Display/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/Tractography/Display/CMakeLists.txt 2008-07-10 22:39:00.000000000 -0400
++++ slicer-3.4.0~svn10133/Modules/Tractography/Display/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -31,14 +31,11 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkSlicerTractographyDisplayConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/Resources/*.h")
+ install(FILES
+- ${headers}
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME}/Resources COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Modules/Tractography/FiducialSeeding/CMakeLists.txt slicer-3.4.0~svn10133/Modules/Tractography/FiducialSeeding/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/Tractography/FiducialSeeding/CMakeLists.txt 2008-07-30 19:34:00.000000000 -0400
++++ slicer-3.4.0~svn10133/Modules/Tractography/FiducialSeeding/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -31,8 +31,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkSlicerTractographyFiducialSeedingConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+@@ -75,6 +73,11 @@
+ ${ITK_LIBRARIES}
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ slicer3_install_modules(${lib_name})
+
+ # --------------------------------------------------------------------------
+diff -urNad slicer-3.4.0~svn10133~/Modules/Tractography/Seeding/CMakeLists.txt slicer-3.4.0~svn10133/Modules/Tractography/Seeding/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/Tractography/Seeding/CMakeLists.txt 2008-05-27 18:44:06.000000000 -0400
++++ slicer-3.4.0~svn10133/Modules/Tractography/Seeding/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -31,8 +31,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkSlicerTractographySeedingConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Modules/VolumeRendering/CMakeLists.txt slicer-3.4.0~svn10133/Modules/VolumeRendering/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/VolumeRendering/CMakeLists.txt 2009-01-20 16:30:19.000000000 -0500
++++ slicer-3.4.0~svn10133/Modules/VolumeRendering/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -33,8 +33,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkVolumeRenderingConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn10133~/Modules/VolumeRendering/VolumeRenderingReplacements/CMakeLists.txt slicer-3.4.0~svn10133/Modules/VolumeRendering/VolumeRenderingReplacements/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/VolumeRendering/VolumeRenderingReplacements/CMakeLists.txt 2009-01-07 14:02:39.000000000 -0500
++++ slicer-3.4.0~svn10133/Modules/VolumeRendering/VolumeRenderingReplacements/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -31,8 +31,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkVolumeRenderingReplacementsConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+@@ -88,4 +86,9 @@
+ ${ITK_LIBRARIES}
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ slicer3_install_modules(${lib_name})
+diff -urNad slicer-3.4.0~svn10133~/Modules/Volumes/CMakeLists.txt slicer-3.4.0~svn10133/Modules/Volumes/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Modules/Volumes/CMakeLists.txt 2009-01-20 17:30:16.000000000 -0500
++++ slicer-3.4.0~svn10133/Modules/Volumes/CMakeLists.txt 2009-08-06 15:54:35.000000000 -0400
+@@ -37,7 +37,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+ "${CMAKE_CURRENT_BINARY_DIR}/vtkVolumesConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+@@ -98,6 +97,11 @@
+ SlicerTractographyFiducialSeeding
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ slicer3_install_modules(${lib_name})
+
+ # --------------------------------------------------------------------------
+diff -urNad slicer-3.4.0~svn10133~/Utilities/Launcher/CMakeLists.txt slicer-3.4.0~svn10133/Utilities/Launcher/CMakeLists.txt
+--- slicer-3.4.0~svn10133~/Utilities/Launcher/CMakeLists.txt 2008-09-25 15:26:44.000000000 -0400
++++ slicer-3.4.0~svn10133/Utilities/Launcher/CMakeLists.txt 2009-08-06 15:56:56.000000000 -0400
+@@ -40,11 +40,11 @@
+ set(launcher_source
+ "${CMAKE_CURRENT_SOURCE_DIR}/Slicer3Launchers/${launcher_name}")
+ set(launcher_binary
+- "${Slicer3_BINARY_DIR}/Slicer3${CMAKE_EXECUTABLE_SUFFIX}")
++ "${Slicer3_BINARY_DIR}/Slicer3-launcher${CMAKE_EXECUTABLE_SUFFIX}")
+
+ if(EXISTS "${launcher_source}")
+ configure_file("${launcher_source}" "${launcher_binary}" COPYONLY)
+- install(PROGRAMS "${launcher_binary}" DESTINATION ".")
++ install(PROGRAMS "${launcher_binary}" DESTINATION ${Slicer3_INSTALL_BIN_DIR})
+ endif(EXISTS "${launcher_source}")
+
+ # Should this location change, change Application/GUI/Slicer3.cxx as well
Added: packages/slicer/tags/3.4.0~svn10133-1/rules
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn10133-1/rules?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn10133-1/rules (added)
+++ packages/slicer/tags/3.4.0~svn10133-1/rules Mon Aug 10 00:09:16 2009
@@ -1,0 +1,165 @@
+#!/usr/bin/make -f
+
+PACKAGE=slicer
+
+# DPatch
+DEB_SOURCE_PACKAGE:=$(PACKAGE)
+include /usr/share/dpatch/dpatch.make
+
+
+# Uncomment this to turn on verbose mode.
+export DH_VERBOSE=0
+
+# set the number of build jobs
+ifneq (,$(filter parallel=%,$(DEB_BUILD_OPTIONS)))
+ JOBS := -j$(patsubst parallel=%,%,$(filter parallel=%,$(DEB_BUILD_OPTIONS)))
+endif
+
+# set optimization mode
+ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
+ CFLAGS += -O0
+else
+ CFLAGS += -O2
+endif
+
+export LD_LIBRARY_PATH+=:$(CURDIR)/DEB_build_shared/bin
+
+# set shared build path
+SHARED_BUILD_PATH = DEB_build_shared
+
+CMAKE_FLAGS = -DCMAKE_INSTALL_PREFIX:PATH=/usr \
+ -DCMAKE_CXX_FLAGS:STRING=-Wno-deprecated \
+ -DCMAKE_CXX_FLAGS=$(CFLAGS) \
+ -DCMAKE_BUILD_TYPE:STRING=Debug \
+ -DCMAKE_VERBOSE_MAKEFILE:BOOL=$(DH_VERBOSE) \
+ -DVOLUMERENDERINGMODULE:BOOL=ON \
+ -DCMAKE_SKIP_RPATH:BOOL=OFF \
+ -DBUILD_TESTING:BOOL=OFF \
+ -DCMAKE_SHARED_LINKER_FLAGS:STRING=-Wl,--as-needed \
+ -DCMAKE_EXE_LINKER_FLAGS:STRING=-Wl,--as-needed \
+ -DSlicer3_USE_IGSTK:BOOL=OFF \
+ -DSlicer3_USE_OPENIGTLINK:BOOL=ON \
+ -DSlicer3_USE_MIDAS:BOOL=ON \
+
+
+get-orig-source:
+ /bin/sh $(CURDIR)/debian/get-orig-source
+
+configure: configure-stamp
+configure-stamp: patch-stamp
+ dh_testdir
+ # Add here commands to configure the package.
+
+ if [ ! -d $(SHARED_BUILD_PATH) ]; then mkdir $(SHARED_BUILD_PATH); fi
+ cd $(SHARED_BUILD_PATH) \
+ && cmake $(CURDIR) $(CMAKE_FLAGS) -DBUILD_SHARED_LIBS:BOOL=ON
+
+ cd $(SHARED_BUILD_PATH) \
+ && cmake $(CURDIR) $(CMAKE_FLAGS) -DBUILD_SHARED_LIBS:BOOL=ON
+
+ touch $@
+
+
+build: build-stamp
+build-stamp: configure
+ dh_testdir
+
+ # Add here commands to compile the package.
+
+ # build shared libs and binaries
+ cd $(SHARED_BUILD_PATH) && $(MAKE) $(JOBS)
+
+ #docbook-to-man debian/slicer.sgml > slicer.1
+
+ touch $@
+
+
+clean: clean-patched unpatch
+
+clean-patched:
+ dh_testdir
+ dh_testroot
+ rm -f build-stamp configure-stamp install-stamp
+
+ # Add here commands to clean up after the build process.
+ rm -rf $(SHARED_BUILD_PATH)
+
+ dh_clean --exclude ./Libs/FreeSurfer/Testing/TestData/lh.dart.orig
+
+install: install-stamp
+install-stamp: build-stamp
+ dh_testdir
+ dh_testroot
+ dh_prep --exclude ./Libs/FreeSurfer/Testing/TestData/lh.dart.orig
+ dh_installdirs
+
+ # Add here commands to install the package into debian/slicer.
+
+ # install binaries and shared libs
+ cd $(SHARED_BUILD_PATH) && $(MAKE) install DESTDIR=$(CURDIR)/debian/tmp
+
+ # remove empty directories
+ rmdir $(CURDIR)/debian/tmp/usr/share/Slicer3/Modules/EMSegment/Testing/TestData/TutorialTest2/VolumeData/Working/
+ rmdir $(CURDIR)/debian/tmp/usr/share/Slicer3/Modules/ModelIntoLabelVolume/Testing/TestData/
+ rmdir $(CURDIR)/debian/tmp/usr/share/Slicer3/Modules/ModelIntoLabelVolume/Testing/
+ rmdir $(CURDIR)/debian/tmp/usr/share/Slicer3/Modules/ModelIntoLabelVolume/
+ chmod +x $(CURDIR)/debian/tmp/usr/lib/Slicer3/Modules/SlicerDaemon/Tcl/slicerget.tcl
+ chmod +x $(CURDIR)/debian/tmp/usr/lib/Slicer3/Modules/SlicerDaemon/Tcl/slicerput.tcl
+ chmod +x $(CURDIR)/debian/tmp/usr/lib/Slicer3/Modules/SlicerDaemon/Tcl/tracker/tracker.tcl
+ chmod +x $(CURDIR)/debian/tmp/usr/lib/Slicer3/SlicerBaseGUI/Tcl/ExternalProgress.tcl
+ chmod +x $(CURDIR)/debian/tmp/usr/lib/Slicer3/launch.tcl
+ chmod +x $(CURDIR)/debian/tmp/usr/share/FreeSurfer/Testing/fips2mrml.tcl
+ chmod +x $(CURDIR)/debian/tmp/usr/share/Slicer3/Modules/ChangeTracker/Simulation/create_artificial_growth_deformation.sh
+ chmod +x $(CURDIR)/debian/tmp/usr/share/Slicer3/Modules/QueryAtlas/Tcl/QueryAtlasFips2Mrml.tcl
+ chmod -x $(CURDIR)/Utilities/Launcher/3DSlicerLogoICOimages/3DSlicerLogo-DesktopIcon-48x48x256.png
+
+ dh_install --sourcedir=$(CURDIR)/debian/tmp --fail-missing
+
+ touch $@
+
+
+# Build architecture-independent files here.
+binary-indep: install
+ dh_testdir -i
+ dh_testroot -i
+ dh_installchangelogs -i
+ dh_installdocs -i
+ dh_installexamples -i
+ dh_lintian -i
+ dh_installman -i
+ dh_link -i
+ dh_strip -i
+ dh_compress -i
+ dh_fixperms -i
+ dh_makeshlibs -i
+ dh_installdeb -i
+ dh_shlibdeps -i
+ dh_gencontrol -i
+ dh_md5sums -i
+ dh_builddeb -i
+
+
+
+# Build architecture-dependent files here.
+binary-arch: install
+ dh_testdir -a
+ dh_testroot -a
+ dh_installchangelogs -a
+ dh_installdocs -a
+ dh_installexamples -a
+ dh_lintian -a
+ dh_installman -a
+ dh_installmenu -a
+ dh_link -a
+ dh_strip -a
+ dh_compress -a
+ dh_fixperms -a
+ dh_makeshlibs -a -plibslicer3
+ dh_installdeb -a
+ dh_shlibdeps -a -l $(CURDIR)/debian/tmp/usr/lib:$(CURDIR)/debian/tmp/usr/lib/Slicer3:$(CURDIR)/debian/tmp/usr/lib/Slicer3/Modules
+ dh_gencontrol -a
+ dh_md5sums -a
+ dh_builddeb -a
+
+binary: binary-indep binary-arch
+.PHONY: build clean binary-indep binary-arch binary install configure
Propchange: packages/slicer/tags/3.4.0~svn10133-1/rules
------------------------------------------------------------------------------
svn:executable = *
Added: packages/slicer/tags/3.4.0~svn10133-1/shlibs.local
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn10133-1/shlibs.local?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn10133-1/shlibs.local (added)
+++ packages/slicer/tags/3.4.0~svn10133-1/shlibs.local Mon Aug 10 00:09:16 2009
@@ -1,0 +1,30 @@
+libLoadableModule 3 libslicer3 (>= 3.0.0-1)
+libModuleDescriptionParser 3 libslicer3 (>= 3.0.0-1)
+libSlicerBaseLogic 3 libslicer3 (>= 3.0.0-1)
+libMRML 3 libslicer3 (>= 3.0.0-1)
+libFreeSurfer 3 libslicer3 (>= 3.0.0-1)
+libIGT 3 libslicer3 (>= 3.0.0-1)
+libRemoteIO 3 libslicer3 (>= 3.0.0-1)
+libCommandLineModule 3 libslicer3 (>= 3.0.0-1)
+libvtkITK 3 libslicer3 (>= 3.0.0-1)
+libvtkTeem 3 libslicer3 (>= 3.0.0-1)
+libSlicerBaseCLI 3 libslicer3 (>= 3.0.0-1)
+libScriptedModule 3 libslicer3 (>= 3.0.0-1)
+libSlicerDaemon 3 libslicer3 (>= 3.0.0-1)
+libSlicerBaseGUI 3 libslicer3 (>= 3.0.0-1)
+libEMSegment 3 libslicer3 (>= 3.0.0-1)
+libQueryAtlas 3 libslicer3 (>= 3.0.0-1)
+libQdecModule 3 libslicer3 (>= 3.0.0-1)
+libVolumes 3 libslicer3 (>= 3.0.0-1)
+libVolumeRenderingReplacements 3 libslicer3 (>= 3.0.0-1)
+libSlicerTractographyFiducialSeeding 3 libslicer3 (>= 3.0.0-1)
+libmimxMeshIO 3 libslicer3 (>= 3.0.0-1)
+libmimxFilter 3 libslicer3 (>= 3.0.0-1)
+libmimxCommon 3 libslicer3 (>= 3.0.0-1)
+libmimxWidgets 3 libslicer3 (>= 3.0.0-1)
+libBuildingBlock 3 libslicer3 (>= 3.0.0-1)
+libQdec 3 libslicer3 (>= 3.0.0-1)
+libMRMLIDIO 3 libslicer3 (>= 3.0.0-1)
+libMGHIO 3 libslicer3 (>= 3.0.0-1)
+libOpenIGTLinkIF 3 libslicer3 (>= 3.0.0-1)
+libChangeTracker 3 libslicer3 (>= 3.0.0-1)
Added: packages/slicer/tags/3.4.0~svn10133-1/slicer-data.install
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn10133-1/slicer-data.install?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn10133-1/slicer-data.install (added)
+++ packages/slicer/tags/3.4.0~svn10133-1/slicer-data.install Mon Aug 10 00:09:16 2009
@@ -1,0 +1,1 @@
+usr/share
Added: packages/slicer/tags/3.4.0~svn10133-1/slicer.desktop
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn10133-1/slicer.desktop?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn10133-1/slicer.desktop (added)
+++ packages/slicer/tags/3.4.0~svn10133-1/slicer.desktop Mon Aug 10 00:09:16 2009
@@ -1,0 +1,10 @@
+[Desktop Entry]
+Name=3D Slicer
+Comment=Start 3D Slicer
+Exec=/usr/bin/slicer3
+Type=Application
+Icon=3DSlicerLogo-DesktopIcon-48x48x256.png
+StartupNotify=true
+Categories=Graphics;MedicalSoftware;
+X-Desktop-File-Install-Version=
+MimeType=
Added: packages/slicer/tags/3.4.0~svn10133-1/slicer.install
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn10133-1/slicer.install?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn10133-1/slicer.install (added)
+++ packages/slicer/tags/3.4.0~svn10133-1/slicer.install Mon Aug 10 00:09:16 2009
@@ -1,0 +1,67 @@
+usr/lib/Slicer3/Modules/Editor
+usr/lib/Slicer3/Modules/SlicerDaemon
+usr/lib/Slicer3/Modules/ScriptedModuleExample
+usr/lib/Slicer3/Modules/ClipModel
+usr/lib/Slicer3/Modules/ModelIntoLabelVolume
+usr/lib/Slicer3/SlicerBaseGUI
+usr/lib/Slicer3/Plugins/ExtractSkeleton
+usr/lib/Slicer3/Plugins/ResampleDTI
+usr/lib/Slicer3/Plugins/ExecutionModelTour
+usr/lib/Slicer3/Plugins/DemonsRegistration
+usr/lib/Slicer3/Plugins/VotingBinaryHoleFillingImageFilter
+usr/lib/Slicer3/Plugins/ModelMaker
+usr/lib/Slicer3/Plugins/DiffusionTensorEstimation
+usr/lib/Slicer3/Plugins/Seeding
+usr/lib/Slicer3/Plugins/OtsuThresholdImageFilter
+usr/lib/Slicer3/Plugins/jointLMMSE
+usr/lib/Slicer3/Plugins/OrientImage
+usr/lib/Slicer3/Plugins/Subtract
+usr/lib/Slicer3/Plugins/ResampleVolume
+usr/lib/Slicer3/Plugins/RigidRegistration
+usr/lib/Slicer3/Plugins/DWIDicomLoad
+usr/lib/Slicer3/Plugins/dwiNoiseFilter
+usr/lib/Slicer3/Plugins/CurvatureAnisotropicDiffusion
+usr/lib/Slicer3/Plugins/ZeroCrossingBasedEdgeDetectionImageFilter
+usr/lib/Slicer3/Plugins/ConfidenceConnected
+usr/lib/Slicer3/Plugins/OtsuThresholdSegmentation
+usr/lib/Slicer3/Plugins/SparseFieldLevelSetContour
+usr/lib/Slicer3/Plugins/ResampleVolume2
+usr/lib/Slicer3/Plugins/EMSegmentCommandLine
+usr/lib/Slicer3/Plugins/Add
+usr/lib/Slicer3/Plugins/ImageReadDicomWrite
+usr/lib/Slicer3/Plugins/AffineRegistration
+usr/lib/Slicer3/Plugins/LabelMapSmoothing
+usr/lib/Slicer3/Plugins/Realign
+usr/lib/Slicer3/Plugins/GaussianBlurImageFilter
+usr/lib/Slicer3/Plugins/GrayscaleFillHoleImageFilter
+usr/lib/Slicer3/Plugins/DiffusionTensorMathematics
+usr/lib/Slicer3/Plugins/EMSegmentCommandLine_GUIVersion
+usr/lib/Slicer3/Plugins/MedianImageFilter
+usr/lib/Slicer3/Plugins/GradientAnisotropicDiffusion
+usr/lib/Slicer3/Plugins/GrayscaleGrindPeakImageFilter
+usr/lib/Slicer3/Plugins/HistogramMatching
+usr/lib/Slicer3/Plugins/GrayscaleModelMaker
+usr/lib/Slicer3/Plugins/LinearRegistration
+usr/lib/Slicer3/Plugins/Threshold
+usr/lib/Slicer3/Plugins/BSplineDeformableRegistration
+usr/lib/Slicer3/Plugins/FreesurferSurfaceSectionExtraction
+usr/lib/Slicer3/Plugins/ImageLabelCombine
+usr/lib/Slicer3/Plugins/dwiUNLM
+usr/lib/Slicer3/Plugins/DownloadSlicerTutorials
+usr/bin/DetectGrowthSegmentation
+usr/bin/applyDeformationITK
+usr/bin/GenerateCLP
+usr/bin/Slicer3-real
+usr/bin/ChangeTrackerCommandLine
+usr/bin/GenerateLMLauncher
+usr/bin/DetectGrowth
+usr/bin/Slicer3
+usr/bin/GenerateLM
+usr/bin/GenerateCLPLauncher
+usr/lib/Slicer3/launch.tcl
+usr/lib/Qdec/vtkFreeSurferReaders.tcl
+usr/lib/Slicer3/Modules/FetchMI/Tcl/FetchMIXMLUtilities.tcl
+usr/lib/Slicer3/Modules/lib*.so.*
+../../Utilities/Launcher/3DSlicerLogoICOimages/3DSlicerLogo-DesktopIcon-48x48x256.png usr/share/pixmaps
+../../debian/slicer.desktop usr/share/applications
+../../debian/slicer3 usr/bin
Added: packages/slicer/tags/3.4.0~svn10133-1/slicer3
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn10133-1/slicer3?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn10133-1/slicer3 (added)
+++ packages/slicer/tags/3.4.0~svn10133-1/slicer3 Mon Aug 10 00:09:16 2009
@@ -1,0 +1,7 @@
+#!/bin/sh
+
+export TK_LIBRARY=/usr/share/tcltk/tk8.4/
+
+/usr/bin/Slicer3 $*
+
+exit 0
Added: packages/slicer/tags/3.4.0~svn10133-1/watch
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn10133-1/watch?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn10133-1/watch (added)
+++ packages/slicer/tags/3.4.0~svn10133-1/watch Mon Aug 10 00:09:16 2009
@@ -1,0 +1,4 @@
+version=3
+opts=uversionmangle=s/^/3.4.0~svn/,filenamemangle=s/.*rev=(\d+)&.*/slicer_3.4.0~svn$1.orig.tar.gz/ \
+http://viewvc.slicer.org/viewcvs.cgi/branches/Slicer-3-4/ ^/viewcvs.cgi\?rev=(\d+)&view=rev$ \
+ debian /bin/sh debian/get-orig-source
Added: packages/slicer/tags/3.4.0~svn9703-1/README.Debian
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn9703-1/README.Debian?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn9703-1/README.Debian (added)
+++ packages/slicer/tags/3.4.0~svn9703-1/README.Debian Mon Aug 10 00:09:16 2009
@@ -1,0 +1,6 @@
+slicer for Debian
+-----------------
+
+This package does not use slicerlibcurl. Instead it uses curl from the Debian repositories.
+
+ -- Dominique Belhachemi <domibel at cs.tu-berlin.de> Sat, 22 Mar 2008 10:08:42 +0000
Added: packages/slicer/tags/3.4.0~svn9703-1/changelog
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn9703-1/changelog?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn9703-1/changelog (added)
+++ packages/slicer/tags/3.4.0~svn9703-1/changelog Mon Aug 10 00:09:16 2009
@@ -1,0 +1,5 @@
+slicer (3.4.0~svn9703-1) experimental; urgency=low
+
+ * Initial release (Closes: #500841)
+
+ -- Dominique Belhachemi <domibel at cs.tu-berlin.de> Fri, 12 Jun 2009 10:03:15 -0400
Added: packages/slicer/tags/3.4.0~svn9703-1/compat
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn9703-1/compat?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn9703-1/compat (added)
+++ packages/slicer/tags/3.4.0~svn9703-1/compat Mon Aug 10 00:09:16 2009
@@ -1,0 +1,1 @@
+7
Added: packages/slicer/tags/3.4.0~svn9703-1/control
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn9703-1/control?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn9703-1/control (added)
+++ packages/slicer/tags/3.4.0~svn9703-1/control Mon Aug 10 00:09:16 2009
@@ -1,0 +1,79 @@
+Source: slicer
+Priority: optional
+Maintainer: Debian Science Team <debian-science-maintainers at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Dominique Belhachemi <domibel at cs.tu-berlin.de>
+Build-Depends: debhelper (>= 7), dpatch, cmake, tcl8.4-dev, tk8.4-dev, libpng-dev, libjpeg-dev,
+ libtiff-dev, libexpat1-dev, libinsighttoolkit3-dev, libkwwidgets1-dev, libcurl4-openssl-dev,
+ libfreetype6-dev, libxext-dev, libvtk5-dev, libteem1-dev, libopenigtlink1-dev, chrpath,
+ uuid-dev, libbz2-dev, libxft-dev, libtclap-dev
+Build-Depends-Indep: doxygen, graphviz
+Standards-Version: 3.8.1
+Vcs-Browser: http://svn.debian.org/wsvn/debian-science/packages/slicer/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-science/packages/slicer/trunk/
+Section: graphics
+Homepage: http://www.slicer.org/
+
+
+Package: slicer
+Architecture: any
+Depends: libslicer3 (= ${binary:Version}), ${shlibs:Depends}, ${misc:Depends},
+ slicer-data, itcl3, iwidgets4, tcllib, tcl8.4-kwwidgets
+Description: software package for visualization and image analysis - main application
+ Slicer is an application for computer scientists and clinical researchers. The
+ platform provides functionality for segmentation, registration and
+ three-dimensional visualization of multi-modal image data, as well as advanced
+ image analysis algorithms for diffusion tensor imaging, functional magnetic
+ resonance imaging and image-guided therapy. Standard image file formats are
+ supported, and the application integrates interface capabilities to biomedical
+ research software and image informatics frameworks.
+ .
+ 3D Slicer main application.
+
+
+Package: libslicer3
+Section: libs
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: software package for visualization and image analysis - runtime
+ Slicer is an application for computer scientists and clinical researchers. The
+ platform provides functionality for segmentation, registration and
+ three-dimensional visualization of multi-modal image data, as well as advanced
+ image analysis algorithms for diffusion tensor imaging, functional magnetic
+ resonance imaging and image-guided therapy. Standard image file formats are
+ supported, and the application integrates interface capabilities to biomedical
+ research software and image informatics frameworks.
+ .
+ 3D Slicer libraries.
+
+
+Package: libslicer3-dev
+Section: libdevel
+Architecture: any
+Depends: libslicer3 (= ${binary:Version}), ${shlibs:Depends}, ${misc:Depends}
+Description: software package for visualization and image analysis - development
+ Slicer is an application for computer scientists and clinical researchers. The
+ platform provides functionality for segmentation, registration and
+ three-dimensional visualization of multi-modal image data, as well as advanced
+ image analysis algorithms for diffusion tensor imaging, functional magnetic
+ resonance imaging and image-guided therapy. Standard image file formats are
+ supported, and the application integrates interface capabilities to biomedical
+ research software and image informatics frameworks.
+ .
+ 3D Slicer development files.
+
+
+Package: slicer-data
+Section: doc
+Architecture: all
+Depends: ${misc:Depends}, tk8.4 | wish
+Description: software package for visualization and image analysis - share
+ Slicer is an application for computer scientists and clinical researchers. The
+ platform provides functionality for segmentation, registration and
+ three-dimensional visualization of multi-modal image data, as well as advanced
+ image analysis algorithms for diffusion tensor imaging, functional magnetic
+ resonance imaging and image-guided therapy. Standard image file formats are
+ supported, and the application integrates interface capabilities to biomedical
+ research software and image informatics frameworks.
+ .
+ 3D Slicer data files.
Added: packages/slicer/tags/3.4.0~svn9703-1/copyright
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn9703-1/copyright?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn9703-1/copyright (added)
+++ packages/slicer/tags/3.4.0~svn9703-1/copyright Mon Aug 10 00:09:16 2009
@@ -1,0 +1,717 @@
+Name: slicer
+Source: http://www.slicer.org/
+
+
+Files: *
+Copyright: 2009, Brigham and Women's Hospital (BWH)
+License: other (3D Slicer license)
+ The 3D Slicer license below is a BSD style license, with extensions
+ to cover contributions and other issues specific to 3D Slicer.
+ .
+ 3D Slicer Contribution and Software License Agreement ("Agreement")
+ Version 1.0 (December 20, 2005)
+ .
+ This Agreement covers contributions to and downloads from the 3D
+ Slicer project ("Slicer") maintained by The Brigham and Women's
+ Hospital, Inc. ("Brigham"). Part A of this Agreement applies to
+ contributions of software and/or data to Slicer (including making
+ revisions of or additions to code and/or data already in Slicer). Part
+ B of this Agreement applies to downloads of software and/or data from
+ Slicer. Part C of this Agreement applies to all transactions with
+ Slicer. If you distribute Software (as defined below) downloaded from
+ Slicer, all of the paragraphs of Part B of this Agreement must be
+ included with and apply to such Software.
+ .
+ Your contribution of software and/or data to Slicer (including prior
+ to the date of the first publication of this Agreement, each a
+ "Contribution") and/or downloading, copying, modifying, displaying,
+ distributing or use of any software and/or data from Slicer
+ (collectively, the "Software") constitutes acceptance of all of the
+ terms and conditions of this Agreement. If you do not agree to such
+ terms and conditions, you have no right to contribute your
+ Contribution, or to download, copy, modify, display, distribute or use
+ the Software.
+ .
+ PART A. CONTRIBUTION AGREEMENT - License to Brigham with Right to
+ Sublicense ("Contribution Agreement").
+ .
+ 1. As used in this Contribution Agreement, "you" means the individual
+ contributing the Contribution to Slicer and the institution or
+ entity which employs or is otherwise affiliated with such
+ individual in connection with such Contribution.
+ .
+ 2. This Contribution Agreement applies to all Contributions made to
+ Slicer, including without limitation Contributions made prior to
+ the date of first publication of this Agreement. If at any time you
+ make a Contribution to Slicer, you represent that (i) you are
+ legally authorized and entitled to make such Contribution and to
+ grant all licenses granted in this Contribution Agreement with
+ respect to such Contribution; (ii) if your Contribution includes
+ any patient data, all such data is de-identified in accordance with
+ U.S. confidentiality and security laws and requirements, including
+ but not limited to the Health Insurance Portability and
+ Accountability Act (HIPAA) and its regulations, and your disclosure
+ of such data for the purposes contemplated by this Agreement is
+ properly authorized and in compliance with all applicable laws and
+ regulations; and (iii) you have preserved in the Contribution all
+ applicable attributions, copyright notices and licenses for any
+ third party software or data included in the Contribution.
+ .
+ 3. Except for the licenses granted in this Agreement, you reserve all
+ right, title and interest in your Contribution.
+ .
+ 4. You hereby grant to Brigham, with the right to sublicense, a
+ perpetual, worldwide, non-exclusive, no charge, royalty-free,
+ irrevocable license to use, reproduce, make derivative works of,
+ display and distribute the Contribution. If your Contribution is
+ protected by patent, you hereby grant to Brigham, with the right to
+ sublicense, a perpetual, worldwide, non-exclusive, no-charge,
+ royalty-free, irrevocable license under your interest in patent
+ rights covering the Contribution, to make, have made, use, sell and
+ otherwise transfer your Contribution, alone or in combination with
+ any other code.
+ .
+ 5. You acknowledge and agree that Brigham may incorporate your
+ Contribution into Slicer and may make Slicer available to members
+ of the public on an open source basis under terms substantially in
+ accordance with the Software License set forth in Part B of this
+ Agreement. You further acknowledge and agree that Brigham shall
+ have no liability arising in connection with claims resulting from
+ your breach of any of the terms of this Agreement.
+ .
+ 6. YOU WARRANT THAT TO THE BEST OF YOUR KNOWLEDGE YOUR CONTRIBUTION
+ DOES NOT CONTAIN ANY CODE THAT REQURES OR PRESCRIBES AN "OPEN
+ SOURCE LICENSE" FOR DERIVATIVE WORKS (by way of non-limiting
+ example, the GNU General Public License or other so-called
+ "reciprocal" license that requires any derived work to be licensed
+ under the GNU General Public License or other "open source
+ license").
+ .
+ PART B. DOWNLOADING AGREEMENT - License from Brigham with Right to
+ Sublicense ("Software License").
+ .
+ 1. As used in this Software License, "you" means the individual
+ downloading and/or using, reproducing, modifying, displaying and/or
+ distributing the Software and the institution or entity which
+ employs or is otherwise affiliated with such individual in
+ connection therewith. The Brigham and Women?s Hospital,
+ Inc. ("Brigham") hereby grants you, with right to sublicense, with
+ respect to Brigham's rights in the software, and data, if any,
+ which is the subject of this Software License (collectively, the
+ "Software"), a royalty-free, non-exclusive license to use,
+ reproduce, make derivative works of, display and distribute the
+ Software, provided that:
+ .
+ (a) you accept and adhere to all of the terms and conditions of this
+ Software License;
+ .
+ (b) in connection with any copy of or sublicense of all or any portion
+ of the Software, all of the terms and conditions in this Software
+ License shall appear in and shall apply to such copy and such
+ sublicense, including without limitation all source and executable
+ forms and on any user documentation, prefaced with the following
+ words: "All or portions of this licensed product (such portions are
+ the "Software") have been obtained under license from The Brigham and
+ Women's Hospital, Inc. and are subject to the following terms and
+ conditions:"
+ .
+ (c) you preserve and maintain all applicable attributions, copyright
+ notices and licenses included in or applicable to the Software;
+ .
+ (c) you preserve and maintain all applicable attributions, copyright
+ notices and licenses included in or applicable to the Software;
+ .
+ (d) modified versions of the Software must be clearly identified and
+ marked as such, and must not be misrepresented as being the original
+ Software; and
+ .
+ (e) you consider making, but are under no obligation to make, the
+ source code of any of your modifications to the Software freely
+ available to others on an open source basis.
+ .
+ 2. The license granted in this Software License includes without
+ limitation the right to (i) incorporate the Software into
+ proprietary programs (subject to any restrictions applicable to
+ such programs), (ii) add your own copyright statement to your
+ modifications of the Software, and (iii) provide additional or
+ different license terms and conditions in your sublicenses of
+ modifications of the Software; provided that in each case your use,
+ reproduction or distribution of such modifications otherwise
+ complies with the conditions stated in this Software License.
+ .
+ 3. This Software License does not grant any rights with respect to
+ third party software, except those rights that Brigham has been
+ authorized by a third party to grant to you, and accordingly you
+ are solely responsible for (i) obtaining any permissions from third
+ parties that you need to use, reproduce, make derivative works of,
+ display and distribute the Software, and (ii) informing your
+ sublicensees, including without limitation your end-users, of their
+ obligations to secure any such required permissions.
+
+ 4. The Software has been designed for research purposes only and has
+ not been reviewed or approved by the Food and Drug Administration
+ or by any other agency. YOU ACKNOWLEDGE AND AGREE THAT CLINICAL
+ APPLICATIONS ARE NEITHER RECOMMENDED NOR ADVISED. Any
+ commercialization of the Software is at the sole risk of the party
+ or parties engaged in such commercialization. You further agree to
+ use, reproduce, make derivative works of, display and distribute
+ the Software in compliance with all applicable governmental laws,
+ regulations and orders, including without limitation those relating
+ to export and import control.
+ .
+ 5. The Software is provided "AS IS" and neither Brigham nor any
+ contributor to the software (each a "Contributor") shall have any
+ obligation to provide maintenance, support, updates, enhancements
+ or modifications thereto. BRIGHAM AND ALL CONTRIBUTORS SPECIFICALLY
+ DISCLAIM ALL EXPRESS AND IMPLIED WARRANTIES OF ANY KIND INCLUDING,
+ BUT NOT LIMITED TO, ANY WARRANTIES OF MERCHANTABILITY, FITNESS FOR
+ A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL
+ BRIGHAM OR ANY CONTRIBUTOR BE LIABLE TO ANY PARTY FOR DIRECT,
+ INDIRECT, SPECIAL, INCIDENTAL, EXEMPLARY OR CONSEQUENTIAL DAMAGES
+ HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY ARISING IN ANY WAY
+ RELATED TO THE SOFTWARE, EVEN IF BRIGHAM OR ANY CONTRIBUTOR HAS
+ BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. TO THE MAXIMUM
+ EXTENT NOT PROHIBITED BY LAW OR REGULATION, YOU FURTHER ASSUME ALL
+ LIABILITY FOR YOUR USE, REPRODUCTION, MAKING OF DERIVATIVE WORKS,
+ DISPLAY, LICENSE OR DISTRIBUTION OF THE SOFTWARE AND AGREE TO
+ INDEMNIFY AND HOLD HARMLESS BRIGHAM AND ALL CONTRIBUTORS FROM AND
+ AGAINST ANY AND ALL CLAIMS, SUITS, ACTIONS, DEMANDS AND JUDGMENTS
+ ARISING THEREFROM.
+ .
+ 6. None of the names, logos or trademarks of Brigham or any of
+ Brigham's affiliates or any of the Contributors, or any funding
+ agency, may be used to endorse or promote products produced in
+ whole or in part by operation of the Software or derived from or
+ based on the Software without specific prior written permission
+ from the applicable party.
+ .
+ 7. Any use, reproduction or distribution of the Software which is not
+ in accordance with this Software License shall automatically revoke
+ all rights granted to you under this Software License and render
+ Paragraphs 1 and 2 of this Software License null and void.
+ .
+ 8. This Software License does not grant any rights in or to any
+ intellectual property owned by Brigham or any Contributor except
+ those rights expressly granted hereunder.
+ .
+ PART C. MISCELLANEOUS
+ .
+ This Agreement shall be governed by and construed in accordance with
+ the laws of The Commonwealth of Massachusetts without regard to
+ principles of conflicts of law. This Agreement shall supercede and
+ replace any license terms that you may have agreed to previously with
+ respect to Slicer.
+
+
+Files:
+ ./Applications/CLI/RegisterImagesModule/Applications/itkImageToImageRegistrationMethodTestingHelper.txx
+ ./Applications/CLI/RegisterImagesModule/Applications/InitialImageToImageRegistrationMethod.cxx
+ ./Applications/CLI/RegisterImagesModule/Applications/BSplineImageToImageRegistrationMethod.cxx
+ ./Applications/CLI/RegisterImagesModule/Applications/AffineImageToImageRegistrationMethod.cxx
+ ./Applications/CLI/RegisterImagesModule/Applications/itkImageToImageRegistrationMethodTestingHelper.h
+ ./Applications/CLI/RegisterImagesModule/Applications/RigidImageToImageRegistrationMethod.cxx
+ ./Modules/VolumeRenderingCuda/vtkVolumeRenderingCudaFactory.cxx
+ ./Modules/VolumeRenderingCuda/vtkVolumeRenderingCudaFactory.h
+ ./Modules/VolumeRenderingCuda/vtkVolumeRenderingToolkit.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastCompositeGOShadeHelper.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastHelper.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerVolumePropertyWidget.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointRayCastImage.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastCompositeGOHelper.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastMIPHelper.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerBoxRepresentation.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastCompositeHelper.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastCompositeGOShadeHelper.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerBoxWidget.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerMesaRayCastImageDisplayHelper.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastHelper.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastCompositeGOHelper.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastCompositeHelper.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerOpenGLRayCastImageDisplayHelper.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerOpenGLVolumeTextureMapper3D.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerBoxWidget.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastCompositeShadeHelper.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointRayCastImage.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerVolumeTextureMapper3D.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerOpenGLVolumeTextureMapper3D.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerMesaRayCastImageDisplayHelper.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerOpenGLRayCastImageDisplayHelper.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerVolumePropertyWidget.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerRayCastImageDisplayHelper.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerRayCastImageDisplayHelper.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastCompositeShadeHelper.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerVolumeRenderingFactory.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerBoxRepresentation.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerBoxWidget2.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastMIPHelper.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerVolumeRenderingFactory.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastMapper.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerFixedPointVolumeRayCastMapper.cxx
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerBoxWidget2.h
+ ./Modules/VolumeRendering/VolumeRenderingReplacements/vtkSlicerVolumeTextureMapper3D.h
+ ./Modules/Volumes/vtkKWWindowLevelThresholdEditor.h
+ ./Modules/Volumes/vtkKWWindowLevelThresholdEditor.cxx
+ ./Modules/Meshing/Common/vtkMimxErrorCallback.h
+ ./Modules/Meshing/Common/vtkFESurfaceList.cxx
+ ./Modules/Meshing/Common/vtkLinkedListIterator.txx
+ ./Modules/Meshing/Common/vtkLocalLinkedListWrapper.cxx
+ ./Modules/Meshing/Common/vtkLinkedListIterator.h
+ ./Modules/Meshing/Common/vtkLinkedListWrapperTree.cxx
+ ./Modules/Meshing/Common/vtkFiniteElementMeshList.cxx
+ ./Modules/Meshing/Common/vtkAbstractList.txx
+ ./Modules/Meshing/Common/vtkContainer.h
+ ./Modules/Meshing/Common/vtkLinkedListWrapper.h
+ ./Modules/Meshing/Common/vtkLinkedList.txx
+ ./Modules/Meshing/Common/vtkContainer.cxx
+ ./Modules/Meshing/Common/vtkFiniteElementBuildingBlockList.h
+ ./Modules/Meshing/Common/vtkLinkedListWrapper.cxx
+ ./Modules/Meshing/Common/vtkLinkedListWrapperTree.h
+ ./Modules/Meshing/Common/vtkAbstractIterator.txx
+ ./Modules/Meshing/Common/vtkFESurfaceList.h
+ ./Modules/Meshing/Common/vtkLocalLinkedListWrapper.h
+ ./Modules/Meshing/Common/vtkFiniteElementBuildingBlockList.cxx
+ ./Modules/Meshing/Common/vtkAbstractIterator.h
+ ./Modules/Meshing/Common/vtkFiniteElementMeshList.h
+ ./Modules/Meshing/Common/vtkLinkedList.h
+ ./Modules/Meshing/Common/vtkAbstractList.h
+ ./Modules/Meshing/BuildingBlock/vtkKWMimxApplication.cxx
+ ./Modules/Meshing/Filter/vtkMeshQualityExtended.cxx
+ ./Base/Logic/vtkImageSlice.cxx
+ ./Base/Logic/vtkImageSlicePaint.cxx
+ ./Base/Logic/vtkImageResliceMask.h
+ ./Base/Logic/vtkImageSlicePaint.h
+ ./Base/Logic/vtkImageResliceMask.cxx
+ ./Base/Logic/vtkSlicerGlyphSource2D.cxx
+ ./Base/Logic/vtkImageSlice.h
+ ./Base/GUI/vtkSlicerBoxRepresentation.h
+ ./Base/GUI/vtkKWMatrix4x4.cxx
+ ./Base/GUI/vtkSlicerViewerInteractorStyle.cxx
+ ./Base/GUI/vtkKWScriptedWidget.h
+ ./Base/GUI/vtkSlicerInteractorStyle.cxx
+ ./Base/GUI/vtkSlicerRenderWidget.cxx
+ ./Base/GUI/vtkKWMatrix4x4.h
+ ./Base/GUI/vtkSlicerApplication.cxx
+ ./Base/GUI/vtkKWScriptedWidget.cxx
+ ./Base/GUI/vtkSlicerRenderWidget.h
+ ./Base/GUI/vtkSlicerViewerInteractorStyle.h
+ ./Base/GUI/vtkSlicerBoxRepresentation.cxx
+ ./Base/GUI/vtkSlicerBoxWidget2.cxx
+ ./Base/GUI/vtkSlicerInteractorStyle.h
+ ./Base/GUI/vtkSlicerBoxWidget2.h
+ ./Libs/vtkTeem/vtkDiffusionTensorMathematicsSimple.h
+ ./Libs/vtkTeem/vtkImageLabelCombine.h
+ ./Libs/vtkTeem/vtkPolyDataTensorToColor.cxx
+ ./Libs/vtkTeem/vtkNRRDReader.cxx
+ ./Libs/vtkTeem/vtkNRRDReader.h
+ ./Libs/vtkTeem/vtkDiffusionTensorMathematicsSimple.cxx
+ ./Libs/vtkTeem/vtkImageLabelCombine.cxx
+ ./Libs/vtkTeem/vtkPolyDataTensorToColor.h
+ ./Libs/vtkITK/vtkITKWandImageFilter.cxx
+ ./Libs/vtkITK/vtkITKLevelTracingImageFilter.cxx
+ ./Libs/vtkITK/vtkITKLevelTracing3DImageFilter.cxx
+Copyright: 1993-2008 Ken Martin, Will Schroeder, Bill Lorensen
+License: other (VTK license)
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions
+ are met:
+ .
+ * Redistributions of source code must retain the above copyright
+ notice, this list of conditions and the following disclaimer.
+ .
+ * Redistributions in binary form must reproduce the above copyright
+ notice, this list of conditions and the following disclaimer in
+ the documentation and/or other materials provided with the
+ distribution.
+ .
+ * Neither name of Ken Martin, Will Schroeder, or Bill Lorensen nor
+ the names of any contributors may be used to endorse or promote
+ products derived from this software without specific prior written
+ permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+ ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+ LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
+ FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
+ AUTHORS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
+ INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
+ BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+ LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN
+ ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ POSSIBILITY OF SUCH DAMAGE.
+
+
+Files:
+ ./Applications/CLI/DWIDicomLoad.cxx
+ ./Applications/CLI/DicomToNrrdConverter.cxx
+Copyright: General Electric Global Research.
+License: other (3D Slicer license)
+ for license text see above
+
+
+Files:
+ ./Modules/Meshing/Common/vtkMeshQualityClass.cxx
+ ./Modules/Meshing/BuildingBlock/vtkFaceHedgeHog.cxx
+ ./Modules/Meshing/BuildingBlock/vtkFaceHedgeHog.h
+ ./Modules/Meshing/Filter/vtkFaceHedgeHog.cxx
+Copyright: 2007, KnowledgeVis, LLC.
+License: other (3D Slicer license)
+ for license text see above
+
+
+Files:
+ ./Modules/Meshing/Common/mimxMatrixTemplate.h
+Copyright: 2000, S. D. Rajan
+License: other (3D Slicer license)
+ see above
+
+
+
+Files: ./Modules/Meshing/*
+Copyright: 2008 MIMX, The University of Iowa
+License: other (MIMX license)
+ Permission is hereby granted, free of charge, to any
+ person obtaining a copy of this software and
+ associated documentation files (the "Software"), to
+ deal in the Software without restriction, including
+ without limitation the rights to use, copy, modify,
+ merge, publish, distribute, and/or sell copies of the
+ Software, and to permit persons to whom the Software
+ is furnished to do so, provided that the above
+ copyright notice(s) and this permission notice appear
+ in all copies of the Software and that both the above
+ copyright notice(s) and this permission notice appear
+ in supporting documentation.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF
+ ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED
+ TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A
+ PARTICULAR PURPOSE AND NONINFRINGEMENT OF THIRD PARTY
+ RIGHTS. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR
+ HOLDERS INCLUDED IN THIS NOTICE BE LIABLE FOR ANY
+ CLAIM, OR ANY SPECIAL INDIRECT OR CONSEQUENTIAL DAMAGES,
+ OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE,
+ DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT,
+ NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF
+ OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS
+ SOFTWARE.
+ .
+ See the web site: http://www.ccad.uiowa.edu/mimx for
+ more information.
+
+
+Files:
+ ./Modules/EMSegment/Algorithm/EMLocalShapeCostFunction.h
+ ./Modules/EMSegment/Algorithm/EMLocalAlgorithm.txx
+ ./Modules/EMSegment/Algorithm/EMLocalAlgorithm_Miscellaneous.txx
+ ./Modules/EMSegment/Algorithm/EMLocalAlgorithm_Print.txx
+ ./Modules/EMSegment/Algorithm/EMLocalInterface.h
+ ./Modules/EMSegment/Algorithm/EMLocalAlgorithm.h
+ ./Modules/EMSegment/Algorithm/EMLocalShapeCostFunction.cxx
+ ./Modules/EMSegment/Algorithm/EMLocalInterface.cxx
+ ./Modules/EMSegment/Algorithm/EMLocalAlgorithm_MeanField.txx
+ ./Modules/EMSegment/Algorithm/EMLocalAlgorithm_Initialization.txx
+ ./Modules/EMSegment/Algorithm/EMLocalRegistrationCostFunction.h
+ ./Modules/EMSegment/Algorithm/EMLocalRegistrationCostFunction.cxx
+ ./Modules/EMSegment/Algorithm/itkEMLocalOptimization.h
+ ./Modules/ChangeTracker/Filters/vtkImageSumOverVoxels.h
+Copyright: 2001, Massachusetts Institute of Technology
+License: other (MIT license)
+ Permission is hereby granted, without payment, to copy, modify, display
+ and distribute this software and its documentation, if any, for any purpose,
+ provided that the above copyright notice and the following three paragraphs
+ appear on all copies of this software. Use of this software constitutes
+ acceptance of these terms and conditions.
+ .
+ IN NO EVENT SHALL MIT BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL,
+ INCIDENTAL, OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OF THIS SOFTWARE
+ AND ITS DOCUMENTATION, EVEN IF MIT HAS BEEN ADVISED OF THE POSSIBILITY OF
+ SUCH DAMAGE.
+ .
+ MIT SPECIFICALLY DISCLAIMS ANY EXPRESS OR IMPLIED WARRANTIES INCLUDING,
+ BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR
+ A PARTICULAR PURPOSE, AND NON-INFRINGEMENT.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS." MIT HAS NO OBLIGATION TO PROVIDE
+ MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS.
+
+
+Files:
+ ./CMake/cuda/CudaDependency.cmake
+ ./CMake/cuda/parse_cubin.cmake
+ ./CMake/cuda/make2cmake.cmake
+ ./CMake/cuda/FindCuda.cmake
+Copyright: 2007, Scientific Computing and Imaging Institute, University of Utah
+License: other
+ License for the specific language governing rights and limitations under
+ Permission is hereby granted, free of charge, to any person obtaining a
+ copy of this software and associated documentation files (the "Software"),
+ to deal in the Software without restriction, including without limitation
+ the rights to use, copy, modify, merge, publish, distribute, sublicense,
+ and/or sell copies of the Software, and to permit persons to whom the
+ Software is furnished to do so, subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included
+ in all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
+ OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
+ THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+ FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
+ DEALINGS IN THE SOFTWARE.
+
+
+Files:
+ ./Applications/CLI/Add.cxx
+ ./Applications/CLI/CurvatureAnisotropicDiffusion.cxx
+ ./Applications/CLI/ResampleVolume.cxx
+ ./Applications/CLI/GradientAnisotropicDiffusion.cxx
+ ./Applications/CLI/MedianImageFilter.cxx
+ ./Applications/CLI/Threshold.cxx
+ ./Applications/CLI/HistogramMatching.cxx
+ ./Applications/CLI/BSplineDeformableRegistration.cxx
+ ./Applications/CLI/UtahBSpline/UtahBSplineDeformableRegistration.cxx
+ ./Applications/CLI/OtsuThresholdSegmentation.cxx
+ ./Applications/CLI/DiffusionApplications/jointLMMSE/itkComputeRestrictedHistogram.h
+ ./Applications/CLI/DiffusionApplications/jointLMMSE/LMMSE.cxx
+ ./Applications/CLI/DiffusionApplications/jointLMMSE/itkComputeRestrictedHistogram.txx
+ ./Applications/CLI/DiffusionApplications/dwiNoiseFilter/itkLMMSEVectorImageFilter.txx
+ ./Applications/CLI/DiffusionApplications/dwiNoiseFilter/itkComputeRestrictedHistogram.h
+ ./Applications/CLI/DiffusionApplications/dwiNoiseFilter/LMMSE.cxx
+ ./Applications/CLI/DiffusionApplications/dwiNoiseFilter/itkComputeRestrictedHistogram.txx
+ ./Applications/CLI/DiffusionApplications/dwiNoiseFilter/itkExtractVolumeFilter.h
+ ./Applications/CLI/DiffusionApplications/dwiNoiseFilter/itkLMMSEVectorImageFilter.h
+ ./Applications/CLI/DiffusionApplications/dwiNoiseFilter/itkComputeStatisticsWherePositiveFilter.txx
+ ./Applications/CLI/DiffusionApplications/dwiNoiseFilter/itkMaskedMeanImageFilter.txx
+ ./Applications/CLI/DiffusionApplications/dwiNoiseFilter/itkExtractVolumeFilter.txx
+ ./Applications/CLI/DiffusionApplications/dwiNoiseFilter/itkMaskedMeanImageFilter.h
+ ./Applications/CLI/DiffusionApplications/dwiNoiseFilter/itkComputeStatisticsWherePositiveFilter.h
+ ./Applications/CLI/DiffusionApplications/dwiUNLM/itkComputeRestrictedHistogram.h
+ ./Applications/CLI/DiffusionApplications/dwiUNLM/UNLM.cxx
+ ./Applications/CLI/DiffusionApplications/dwiUNLM/itkComputeRestrictedHistogram.txx
+ ./Applications/CLI/DiffusionApplications/dwiUNLM/itkUNLMFilter.h
+ ./Applications/CLI/DiffusionApplications/dwiUNLM/itkUNLMFilter.txx
+ ./Applications/CLI/CheckerBoard.cxx
+ ./Applications/CLI/Subtract.cxx
+ ./Applications/CLI/Testing/BSplineWarping3DTest.cxx
+ ./Applications/CLI/RegisterImagesModule/itkRigidImageToImageRegistrationMethod.txx
+ ./Applications/CLI/RegisterImagesModule/itkBSplineImageToImageRegistrationMethod.h
+ ./Applications/CLI/RegisterImagesModule/itkBSplineImageToImageRegistrationMethod.txx
+ ./Applications/CLI/RegisterImagesModule/itkImageToImageRegistrationMethod.h
+ ./Applications/CLI/RegisterImagesModule/itkAffineImageToImageRegistrationMethod.h
+ ./Applications/CLI/RegisterImagesModule/itkImageToImageRegistrationHelper.h
+ ./Applications/CLI/RegisterImagesModule/itkOptimizedImageToImageRegistrationMethod.txx
+ ./Applications/CLI/RegisterImagesModule/itkInitialImageToImageRegistrationMethod.txx
+ ./Applications/CLI/RegisterImagesModule/itkImageToImageRegistrationHelper.txx
+ ./Applications/CLI/RegisterImagesModule/itkRigidImageToImageRegistrationMethod.h
+ ./Applications/CLI/RegisterImagesModule/itkImageToImageRegistrationMethod.txx
+ ./Applications/CLI/RegisterImagesModule/itkOptimizedImageToImageRegistrationMethod.h
+ ./Applications/CLI/RegisterImagesModule/itkInitialImageToImageRegistrationMethod.h
+ ./Applications/CLI/RegisterImagesModule/itkAffineImageToImageRegistrationMethod.txx
+ ./Applications/CLI/TestGridTransformRegistration.cxx
+ ./Applications/CLI/OtsuThresholdImageFilter.cxx
+ ./Applications/CLI/OrientImage.cxx
+ ./Base/CLI/itkPluginFilterWatcher.h
+ ./Modules/Meshing/Mesh/itkMimxImageToVtkUnstructuredGridFilter.txx
+ ./Modules/Meshing/Filter/vtkMimxRebinMaterialProperty.cxx
+ ./Modules/Meshing/Filter/vtkMimxRebinMaterialProperty.h
+ ./Modules/Meshing/Filter/itkMimxImageToVtkUnstructuredGridFilter.txx
+ ./Modules/Meshing/Testing/vtkRebinMaterialPropertyTest.cxx
+ ./Modules/Meshing/Testing/itkImageToVtkUnstructuredGridTest.cxx
+ ./Modules/Meshing/Adapter/itkImageToVTKImageFilter.h
+ ./Modules/Meshing/Adapter/itkImageToVTKImageFilter.txx
+ ./Modules/Meshing/IO/itkPluginFilterWatcher.h
+ ./Libs/vtkITK/itkEncodedTransformFileReader.h
+ ./Libs/vtkITK/itkEncodedTransformFileWriter.h
+ ./Libs/vtkITK/vtkITKNewOtsuThresholdImageFilter.cxx
+ ./Libs/vtkITK/itkNewOtsuThresholdImageFilter.h
+ ./Libs/vtkITK/itkNewOtsuThresholdImageFilter.txx
+ ./Libs/vtkITK/itkNewOtsuThresholdImageCalculator.txx
+ ./Libs/vtkITK/itkEncodedTransformFileWriter.cxx
+ ./Libs/vtkITK/itkDisplacementFieldTransform.h
+ ./Libs/vtkITK/itkEncodedTransformFileReader.cxx
+ ./Libs/vtkITK/itkDisplacementFieldTransform.txx
+ ./Libs/MRMLIDImageIO/itkMRMLIDImageIOFactory.h
+ ./Libs/MRMLIDImageIO/itkMRMLIDImageIOFactory.cxx
+Copyright: Insight Software Consortium.
+License: other (ITK license)
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are met:
+ .
+ * Redistributions of source code must retain the above copyright notice,
+ this list of conditions and the following disclaimer.
+ .
+ * Redistributions in binary form must reproduce the above copyright notice,
+ this list of conditions and the following disclaimer in the documentation
+ and/or other materials provided with the distribution.
+ .
+ * Neither the name of the Insight Software Consortium nor the names of its
+ contributors may be used to endorse or promote products derived from this
+ software without specific prior written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+ ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+ DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
+ ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+ (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
+ ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+
+Files: ./Modules/Meshing/Filter/itkMimxAccumulator.h
+Copyright:
+ 2008 MIMX, The University of Iowa
+ Insight Software Consortium
+Licence: other (ITK license AND MIMX license)
+ for license text see above
+
+
+Files:
+ ./Modules/ChangeTracker/Filters/vtkImageKilianDistanceTransform.cxx
+ ./Modules/ChangeTracker/Filters/vtkImageKilianDistanceTransform.h
+Copyright:
+ 1993-2002 Ken Martin, Will Schroeder, Bill Lorensen
+ 2001 Massachusetts Institute of Technology
+License: other (VTK license and MIT license)
+ for license text see above
+
+
+Files: ./Libs/SlicerIO/utilities.c
+Copyright: 2004, Robert Seeger (RHS)
+License: other
+ On Tue, 2009-05-19 at 09:12 -0400, Robert Seeger wrote:
+ > Dominique,
+ >
+ > You are welcome to use my code however you need to, free of license
+ > restrictions. While I'd prefer you didn't claim you wrote it yourself,
+ > I don't particularly care if you include anything indicating that
+ > I did write it (I don't mind either way).
+ >
+
+
+Files:
+ ./Applications/CLI/DiffeomorphicDemonsRegistration/DemonsRegistration.cxx
+Copyright: Tom Vercauteren, INRIA & Mauna Kea Technologies
+License: BSD
+ On Debian systems the full text of the BSD License can be
+ found in the `/usr/share/common-licenses/BSD' file.
+
+
+Files:
+ ./Modules/Meshing/Common/vtkPVAxesActor.cxx
+ ./Modules/Meshing/Common/vtkPVAxesActor.h
+Copyright: Kitware, Inc.
+License: other (ParaView License Version 1.2)
+ -----------------------------------------------------------------------------
+ Copyright (c) 2005-2008 Sandia Corporation, Kitware Inc.
+ .
+ Sandia National Laboratories, New Mexico PO Box 5800 Albuquerque, NM 87185
+ .
+ Kitware Inc.
+ 28 Corporate Drive
+ Clifton Park, NY 12065
+ USA
+ .
+ Under the terms of Contract DE-AC04-94AL85000, there is a non-exclusive
+ license for use of this work by or on behalf of the U.S. Government.
+ .
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are met:
+ .
+ * Redistributions of source code must retain the above copyright notice,
+ this list of conditions and the following disclaimer.
+ .
+ * Redistributions in binary form must reproduce the above copyright notice,
+ this list of conditions and the following disclaimer in the documentation
+ and/or other materials provided with the distribution.
+ .
+ * Neither the name of Kitware nor the names of any contributors may be used
+ to endorse or promote products derived from this software without specific
+ prior written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS''
+ AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR
+ ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+ DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+ SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+ OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ -----------------------------------------------------------------------------
+
+
+Files:
+ ./Base/GUI/Python/ipTk.py
+Copyright: 2009, Demian Wassermann, EPI Odyssee, INRIA Sophia-Antipolis
+License: BSD
+ On Debian systems the full text of the BSD License can be
+ found in the `/usr/share/common-licenses/BSD' file.
+
+
+Files:
+ ./Base/GUI/Python/_mytkinter.c
+Copyright: 1994 Steen Lumholt
+License: PSF-2
+ PYTHON SOFTWARE FOUNDATION LICENSE VERSION 2
+ --------------------------------------------
+ .
+ 1. This LICENSE AGREEMENT is between the Python Software Foundation
+ ("PSF"), and the Individual or Organization ("Licensee") accessing and
+ otherwise using this software ("Python") in source or binary form and
+ its associated documentation.
+ .
+ 2. Subject to the terms and conditions of this License Agreement, PSF
+ hereby grants Licensee a nonexclusive, royalty-free, world-wide
+ license to reproduce, analyze, test, perform and/or display publicly,
+ prepare derivative works, distribute, and otherwise use Python
+ alone or in any derivative version, provided, however, that PSF's
+ License Agreement and PSF's notice of copyright, i.e., "Copyright (c)
+ 2001, 2002, 2003, 2004, 2005, 2006 Python Software Foundation; All Rights
+ Reserved" are retained in Python alone or in any derivative version
+ prepared by Licensee.
+ .
+ 3. In the event Licensee prepares a derivative work that is based on
+ or incorporates Python or any part thereof, and wants to make
+ the derivative work available to others as provided herein, then
+ Licensee hereby agrees to include in any such work a brief summary of
+ the changes made to Python.
+ .
+ 4. PSF is making Python available to Licensee on an "AS IS"
+ basis. PSF MAKES NO REPRESENTATIONS OR WARRANTIES, EXPRESS OR
+ IMPLIED. BY WAY OF EXAMPLE, BUT NOT LIMITATION, PSF MAKES NO AND
+ DISCLAIMS ANY REPRESENTATION OR WARRANTY OF MERCHANTABILITY OR FITNESS
+ FOR ANY PARTICULAR PURPOSE OR THAT THE USE OF PYTHON WILL NOT
+ INFRINGE ANY THIRD PARTY RIGHTS.
+ .
+ 5. PSF SHALL NOT BE LIABLE TO LICENSEE OR ANY OTHER USERS OF PYTHON
+ FOR ANY INCIDENTAL, SPECIAL, OR CONSEQUENTIAL DAMAGES OR LOSS AS
+ A RESULT OF MODIFYING, DISTRIBUTING, OR OTHERWISE USING PYTHON,
+ OR ANY DERIVATIVE THEREOF, EVEN IF ADVISED OF THE POSSIBILITY THEREOF.
+ .
+ 6. This License Agreement will automatically terminate upon a material
+ breach of its terms and conditions.
+ .
+ 7. Nothing in this License Agreement shall be deemed to create any
+ relationship of agency, partnership, or joint venture between PSF and
+ Licensee. This License Agreement does not grant permission to use PSF
+ trademarks or trade name in a trademark sense to endorse or promote
+ products or services of Licensee, or any third party.
+ .
+ 8. By copying, installing or otherwise using Python, Licensee
+ agrees to be bound by the terms and conditions of this License
+ Agreement.
+
+
+Files: debian/*
+Copyright: 2008-2009, Dominique Belhachemi <domibel at cs.tu-berlin.de>
+License: BSD
+ On Debian systems the full text of the BSD License can be
+ found in the `/usr/share/common-licenses/BSD' file.
Added: packages/slicer/tags/3.4.0~svn9703-1/dirs
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn9703-1/dirs?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn9703-1/dirs (added)
+++ packages/slicer/tags/3.4.0~svn9703-1/dirs Mon Aug 10 00:09:16 2009
@@ -1,0 +1,2 @@
+usr/lib/InsightToolkit
+usr/lib/KWWidgets
Added: packages/slicer/tags/3.4.0~svn9703-1/docs
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn9703-1/docs?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn9703-1/docs (added)
+++ packages/slicer/tags/3.4.0~svn9703-1/docs Mon Aug 10 00:09:16 2009
@@ -1,0 +1,1 @@
+README.txt
Added: packages/slicer/tags/3.4.0~svn9703-1/get-orig-source
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn9703-1/get-orig-source?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn9703-1/get-orig-source (added)
+++ packages/slicer/tags/3.4.0~svn9703-1/get-orig-source Mon Aug 10 00:09:16 2009
@@ -1,0 +1,58 @@
+#!/bin/sh
+set -ex
+
+PACKAGE=slicer
+
+VERSION=${VERSION:-$2}
+TARFILE=${TARFILE:-$3}
+
+if [ -z ${VERSION}]; then
+VERSION=`dpkg-parsechangelog | sed -n -e 's/^Version: \(.*\)-[^-]*$/\1/p'`
+fi
+
+REVISION=`echo $VERSION | sed -e 's/^.*svn//g'`
+
+
+if [ -z ${TARFILE}]; then
+TARFILE=${PACKAGE}_${VERSION}.orig.tar.gz
+fi
+
+FOLDER=${PACKAGE}-${VERSION}
+
+
+svn export --quiet --revision ${REVISION} http://svn.slicer.org/Slicer3/branches/Slicer-3-4 ${FOLDER}
+
+cd ${FOLDER}
+rm ./Utilities/Launcher/*.tcl
+rm ./Utilities/Launcher/CMakeLists.txt
+rm -rf ./Utilities/Launcher/Slicer3Launchers/
+rm -rf ./Utilities/Launcher/tclkits/
+rm -rf ./Utilities/Launcher/Slicer3.vfs/
+rm -f ./Utilities/Launcher/3DSlicerLogoICOimages/Thumbs.db
+rm -rf ./Libs/tclap/
+#- find . -type f -name *.vcproj | xargs rm
+rm -f ./Modules/QueryAtlas/Resources/controlledVocabulary.xls
+#rm -f ./Modules/ChangeTracker/Testing/scan2.raw.gz
+#rm -f ./Modules/ChangeTracker/Simulation/original.raw.gz
+#rm -f ./Modules/ChangeTracker/Testing/scan1.raw.gz
+# remove jar files
+rm -rf ./Modules/QueryAtlas/OntologyViz/
+#rm -rf ./Testing/
+#rm ./Modules/EMSegment/Testing/TestData/TutorialTest/StandardData/StandardSegmentationResult_small_normalizationOn.raw
+#rm ./Modules/EMSegment/Testing/TestData/TutorialTest/StandardData/StandardSegmentationResult_small.raw
+#rm ./Modules/EMSegment/Testing/TestData/TutorialTest/VolumeData/atlasBackgroundReg_small.raw
+#rm ./Modules/EMSegment/Testing/TestData/TutorialTest/VolumeData/atlasCSFReg_small.raw
+#rm ./Modules/EMSegment/Testing/TestData/TutorialTest/VolumeData/atlasGreymatterReg_small.raw
+#rm ./Modules/EMSegment/Testing/TestData/TutorialTest/VolumeData/atlasWhitematterReg_small.raw
+#rm ./Modules/EMSegment/Testing/TestData/TutorialTest/VolumeData/segmentationResult_small.raw
+#rm ./Modules/EMSegment/Testing/TestData/TutorialTest/VolumeData/targetT1Normed_small.raw
+#rm ./Modules/EMSegment/Testing/TestData/TutorialTest/VolumeData/targetT2Normed_small.raw
+rm ./Modules/Editor/ImageData/Thumbs.db
+rm ./Modules/MRAblation/.vtkMRAblationLogic.cxx.swo
+rm -rf ./Modules/ProstateNav/newmat
+#grep -rnl Davies ./Modules/ProstateNav/newmat/ | xargs rm
+cd ..
+
+GZIP=-9 tar czf ${TARFILE} ${FOLDER}
+rm -rf ${FOLDER}
+
Added: packages/slicer/tags/3.4.0~svn9703-1/libslicer3-dev.install
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn9703-1/libslicer3-dev.install?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn9703-1/libslicer3-dev.install (added)
+++ packages/slicer/tags/3.4.0~svn9703-1/libslicer3-dev.install Mon Aug 10 00:09:16 2009
@@ -1,0 +1,10 @@
+usr/lib/lib*.so
+usr/lib/Slicer3/lib*.so
+usr/lib/Slicer3/Modules/lib*.so
+usr/include
+usr/lib/GenerateLM
+usr/lib/GenerateCLP
+usr/lib/LoadableModule
+usr/lib/ModuleDescriptionParser
+usr/lib/Slicer3/*cmake
+usr/lib/Slicer3/CMake
Added: packages/slicer/tags/3.4.0~svn9703-1/libslicer3.install
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn9703-1/libslicer3.install?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn9703-1/libslicer3.install (added)
+++ packages/slicer/tags/3.4.0~svn9703-1/libslicer3.install Mon Aug 10 00:09:16 2009
@@ -1,0 +1,7 @@
+usr/lib/lib*.so.*
+usr/lib/Slicer3/lib*.so.*
+usr/lib/Slicer3/ITKFactories/libCommandIOPlugin.so
+usr/lib/Slicer3/ITKFactories/libMRMLIDIOPlugin.so
+usr/lib/Slicer3/ITKFactories/libMGHIOPlugin.so
+usr/lib/Slicer3/Plugins/lib*.so
+usr/lib/SlicerIO/libslicerio.a
Added: packages/slicer/tags/3.4.0~svn9703-1/libslicer3.lintian-overrides
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn9703-1/libslicer3.lintian-overrides?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn9703-1/libslicer3.lintian-overrides (added)
+++ packages/slicer/tags/3.4.0~svn9703-1/libslicer3.lintian-overrides Mon Aug 10 00:09:16 2009
@@ -1,0 +1,1 @@
+libslicer3: package-name-doesnt-match-sonames libCommandIO3 libFreeSurfer3 libIGT3 libLoadableModule3 libMGHIO3 libMRML3 libMRMLIDIO3 libModuleDescriptionParser3 libQdec3 libRemoteIO3 libvtkITK3 libvtkTeem3
Added: packages/slicer/tags/3.4.0~svn9703-1/menu
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn9703-1/menu?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn9703-1/menu (added)
+++ packages/slicer/tags/3.4.0~svn9703-1/menu Mon Aug 10 00:09:16 2009
@@ -1,0 +1,2 @@
+?package(slicer):needs="X11" section="Applications/Science/Medicine"\
+ title="3D Slicer" command="/usr/bin/slicer3"
Added: packages/slicer/tags/3.4.0~svn9703-1/patches/00list
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn9703-1/patches/00list?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn9703-1/patches/00list (added)
+++ packages/slicer/tags/3.4.0~svn9703-1/patches/00list Mon Aug 10 00:09:16 2009
@@ -1,0 +1,1 @@
+50_all_changes.dpatch
Added: packages/slicer/tags/3.4.0~svn9703-1/patches/50_all_changes.dpatch
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn9703-1/patches/50_all_changes.dpatch?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn9703-1/patches/50_all_changes.dpatch (added)
+++ packages/slicer/tags/3.4.0~svn9703-1/patches/50_all_changes.dpatch Mon Aug 10 00:09:16 2009
@@ -1,0 +1,1104 @@
+#! /bin/sh /usr/share/dpatch/dpatch-run
+## 50_all_changes.dpatch by <domibel at sid1500>
+##
+## All lines beginning with `## DP:' are a description of the patch.
+## DP: This patch adds soname version numbers
+
+ at DPATCH@
+diff -urNad slicer-3.4.0~svn9703~/Applications/CLI/MIDASApplications/DownloadSlicerTutorials/CMakeLists.txt slicer-3.4.0~svn9703/Applications/CLI/MIDASApplications/DownloadSlicerTutorials/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Applications/CLI/MIDASApplications/DownloadSlicerTutorials/CMakeLists.txt 2008-06-24 18:14:09.000000000 -0400
++++ slicer-3.4.0~svn9703/Applications/CLI/MIDASApplications/DownloadSlicerTutorials/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -18,8 +18,8 @@
+
+ #
+ # Find SLICERLIBCURL (slicercurl)
+-find_package(SLICERLIBCURL REQUIRED)
+-include(${SLICERLIBCURL_USE_FILE})
++find_package(CURL REQUIRED)
++include(${CURL_INCLUDE_DIRS})
+
+ #
+ # Find GenerateCLP
+@@ -39,7 +39,7 @@
+ add_executable(DownloadSlicerTutorials ${DownloadSlicerTutorials_SOURCE})
+ slicer3_set_plugins_output_path(DownloadSlicerTutorials)
+ target_link_libraries(DownloadSlicerTutorials
+- ${SLICERLIBCURL_LIBRARIES} ITKIO MRMLIDIO itkzlib)
++ ${CURL_LIBRARIES} ITKIO MRMLIDIO)
+
+ #
+ # Generate shared loadable slicer module
+@@ -49,7 +49,7 @@
+ COMPILE_FLAGS "-Dmain=ModuleEntryPoint")
+ slicer3_set_plugins_output_path(DownloadSlicerTutorialsModule)
+ target_link_libraries(DownloadSlicerTutorialsModule
+- ${SLICERLIBCURL_LIBRARIES} ITKIO MRMLIDIO itkzlib)
++ ${CURL_LIBRARIES} ITKIO MRMLIDIO)
+
+ #
+ # Move exec and module to where Slicer can find them
+diff -urNad slicer-3.4.0~svn9703~/Applications/CLI/MIDASApplications/DownloadSlicerTutorials/DownloadSlicerTutorials.cxx slicer-3.4.0~svn9703/Applications/CLI/MIDASApplications/DownloadSlicerTutorials/DownloadSlicerTutorials.cxx
+--- slicer-3.4.0~svn9703~/Applications/CLI/MIDASApplications/DownloadSlicerTutorials/DownloadSlicerTutorials.cxx 2009-04-10 13:33:12.000000000 -0400
++++ slicer-3.4.0~svn9703/Applications/CLI/MIDASApplications/DownloadSlicerTutorials/DownloadSlicerTutorials.cxx 2009-06-16 20:31:19.000000000 -0400
+@@ -3,7 +3,7 @@
+ #endif
+
+ // Includes
+-#include <slicerlibcurl/slicerlibcurl.h>
++#include <curl/curl.h>
+ #include <itksys/SystemTools.hxx>
+ #include <itksys/Process.h>
+ #include <math.h>
+diff -urNad slicer-3.4.0~svn9703~/Applications/GUI/CMakeLists.txt slicer-3.4.0~svn9703/Applications/GUI/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Applications/GUI/CMakeLists.txt 2009-02-11 17:48:16.000000000 -0500
++++ slicer-3.4.0~svn9703/Applications/GUI/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -45,7 +45,7 @@
+ set(Slicer3_FORWARD_PATH_BUILD
+ "\"${Slicer3_FORWARD_DIR_BUILD}\",\"${VTK_DIR}/bin\",\"${KWWidgets_RUNTIME_DIRS}\",\"${ITK_DIR}/bin\",\"${Teem_DIR}/bin\",\"${TCL_DIR}/bin\",\"${INCR_TCL_LIBRARY_PATH}\",\"${INCR_TK_LIBRARY_PATH}\",\"${OPENGL_gl_LIBRARY_PATH}\"")
+ set(Slicer3_FORWARD_PATH_INSTALL
+- "\"../${Slicer3_INSTALL_LIB_DIR}\",\"../lib/vtk-${VTK_MAJOR_VERSION}.${VTK_MINOR_VERSION}\",\"../lib/KWWidgets\",\"../lib/InsightToolkit\",\"../lib/Teem-${Teem_VERSION_MAJOR}.${Teem_VERSION_MINOR}\",\"../lib/TclTk/lib\",\"../lib/TclTk/lib/itcl${INCR_TCL_VERSION_DOT}\",\"../lib/TclTk/lib/itk${INCR_TCL_VERSION_DOT}\",\"../lib/FreeSurfer\",\"../lib/IGT\",\"../lib/ITKCommandIO\",\"../lib/LoadableModule\",\"../lib/MGHImageIO\",\"../lib/MRML\",\"../lib/ModuleDescriptionParser\",\"../lib/MRMLIDImageIO\",\"../lib/Qdec\",\"../lib/RemoteIO\",\"../lib/SlicerIO\",\"../lib/tclap\",\"../lib/vtkITK\",\"../lib/vtkTeem\"")
++ "\"../${Slicer3_INSTALL_LIB_DIR}\",\"../lib/vtk-${VTK_MAJOR_VERSION}.${VTK_MINOR_VERSION}\",\"../lib/KWWidgets\",\"../lib/InsightToolkit\"")
+ if(Slicer3_BUILD_MODULES)
+ set(Slicer3_FORWARD_PATH_BUILD
+ "${Slicer3_FORWARD_PATH_BUILD},\"${Slicer3_HOME}/${Slicer3_INSTALL_MODULES_BIN_DIR}\"")
+@@ -95,8 +95,10 @@
+ # --------------------------------------------------------------------------
+ # Find SLICERLIBCURL (slicercurl)
+ #
+-find_package(SLICERLIBCURL REQUIRED)
+-include(${SLICERLIBCURL_USE_FILE})
++#find_package(SLICERLIBCURL REQUIRED)
++#include(${SLICERLIBCURL_USE_FILE})
++find_package(CURL REQUIRED)
++include(${CURL_INCLUDE_DIRS})
+
+ # --------------------------------------------------------------------------
+ # Include dirs
+diff -urNad slicer-3.4.0~svn9703~/Applications/GUI/Slicer3.cxx slicer-3.4.0~svn9703/Applications/GUI/Slicer3.cxx
+--- slicer-3.4.0~svn9703~/Applications/GUI/Slicer3.cxx 2009-06-12 13:57:58.000000000 -0400
++++ slicer-3.4.0~svn9703/Applications/GUI/Slicer3.cxx 2009-06-16 20:31:19.000000000 -0400
+@@ -411,7 +411,7 @@
+ }
+
+ std::string tclEnv = "TCL_LIBRARY=";
+- tclEnv += slicerHome + "/lib/TclTk/lib/tcl" + Slicer3_TCL_TK_MAJOR_VERSION + "." + Slicer3_TCL_TK_MINOR_VERSION;
++ tclEnv += slicerHome + "/lib/tcl" + Slicer3_TCL_TK_MAJOR_VERSION + "." + Slicer3_TCL_TK_MINOR_VERSION;
+ vtkKWApplication::PutEnv(const_cast <char *> (tclEnv.c_str()));
+
+ // ITK factories dir
+diff -urNad slicer-3.4.0~svn9703~/Base/CLI/CMakeLists.txt slicer-3.4.0~svn9703/Base/CLI/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Base/CLI/CMakeLists.txt 2008-05-20 03:31:33.000000000 -0400
++++ slicer-3.4.0~svn9703/Base/CLI/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -58,6 +58,11 @@
+ slicer3_get_persistent_property(Slicer3_Base_LIBRARIES tmp)
+ slicer3_set_persistent_property(Slicer3_Base_LIBRARIES ${tmp} SlicerBaseCLI)
+
++SET_TARGET_PROPERTIES(SlicerBaseCLI PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS SlicerBaseCLI
+ RUNTIME DESTINATION ${Slicer3_INSTALL_BIN_DIR} COMPONENT RuntimeLibraries
+ LIBRARY DESTINATION ${Slicer3_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
+diff -urNad slicer-3.4.0~svn9703~/Base/GUI/CMakeLists.txt slicer-3.4.0~svn9703/Base/GUI/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Base/GUI/CMakeLists.txt 2009-03-16 11:34:28.000000000 -0400
++++ slicer-3.4.0~svn9703/Base/GUI/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -177,6 +177,11 @@
+ RemoteIO
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ slicer3_get_persistent_property(Slicer3_Base_LIBRARIES tmp)
+ slicer3_set_persistent_property(Slicer3_Base_LIBRARIES ${tmp} ${lib_name})
+
+diff -urNad slicer-3.4.0~svn9703~/Base/Logic/CMakeLists.txt slicer-3.4.0~svn9703/Base/Logic/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Base/Logic/CMakeLists.txt 2008-11-05 14:25:28.000000000 -0500
++++ slicer-3.4.0~svn9703/Base/Logic/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -115,6 +115,11 @@
+ slicer3_get_persistent_property(Slicer3_Base_LIBRARIES tmp)
+ slicer3_set_persistent_property(Slicer3_Base_LIBRARIES ${tmp} ${lib_name})
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION ${Slicer3_INSTALL_BIN_DIR} COMPONENT RuntimeLibraries
+ LIBRARY DESTINATION ${Slicer3_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
+diff -urNad slicer-3.4.0~svn9703~/CMakeLists.txt slicer-3.4.0~svn9703/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/CMakeLists.txt 2009-04-22 19:00:01.000000000 -0400
++++ slicer-3.4.0~svn9703/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -27,6 +27,11 @@
+
+ set(Slicer3_HOME "${Slicer3_BINARY_DIR}")
+
++# TCL
++find_package(TCL REQUIRED)
++
++
++
+ #-----------------------------------------------------------------------------
+ # Disable the warnings that DevStudio 2005 emits wrt to sprintf, strcpu, etc.
+ #
+@@ -60,6 +65,9 @@
+ set(Slicer3_VERSION "${Slicer3_VERSION_MAJOR}.${Slicer3_VERSION_MINOR}")
+ set(Slicer3_VERSION_FULL "${Slicer3_VERSION}.${Slicer3_VERSION_PATCH}")
+
++set ( Slicer3_SHAREDLIB_VERSION ${Slicer3_VERSION_FULL} )
++string ( REGEX MATCH "^[0-9]+" Slicer3_SHAREDLIB_SOVERSION ${Slicer3_SHAREDLIB_VERSION} )
++
+ #-----------------------------------------------------------------------------
+ # Build shared lib by default
+ #
+@@ -159,10 +167,15 @@
+ include(${Teem_USE_FILE})
+
+ ## SlicerLibCurl
+-find_package(SLICERLIBCURL REQUIRED)
+-if(SLICERLIBCURL_FOUND)
+- include(${SLICERLIBCURL_USE_FILE})
+-endif(SLICERLIBCURL_FOUND)
++#find_package(SLICERLIBCURL REQUIRED)
++#if(SLICERLIBCURL_FOUND)
++# include(${SLICERLIBCURL_USE_FILE})
++#endif(SLICERLIBCURL_FOUND)
++find_package(CURL REQUIRED)
++if(CURL_FOUND)
++ # Add include directories needed to use CURL.
++ include_directories(${CURL_INCLUDE_DIRS})
++endif(CURL_FOUND)
+
+ ## BatchMake
+ option(Slicer3_USE_BatchMake "Build Slicer3 with BatchMake support." OFF)
+@@ -178,7 +191,7 @@
+ option(Slicer3_USE_OPENIGTLINK "Build Slicer3 with OpenIGTLink support." OFF)
+ if(Slicer3_USE_OPENIGTLINK)
+ find_package(OpenIGTLink REQUIRED)
+- include(${OpenIGTLink_USE_FILE})
++ include_directories(${OpenIGTLink_INCLUDE_DIRS})
+ endif(Slicer3_USE_OPENIGTLINK)
+
+ #-----------------------------------------------------------------------------
+@@ -333,7 +346,7 @@
+ #-----------------------------------------------------------------------------
+ # Launcher for slicer
+ #
+-add_subdirectory(Utilities/Launcher)
++#add_subdirectory(Utilities/Launcher)
+
+ configure_file(
+ ${Slicer3_SOURCE_DIR}/launch.tcl.in
+diff -urNad slicer-3.4.0~svn9703~/Libs/CMakeLists.txt slicer-3.4.0~svn9703/Libs/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Libs/CMakeLists.txt 2008-11-05 18:39:51.000000000 -0500
++++ slicer-3.4.0~svn9703/Libs/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -1,7 +1,6 @@
+ project(SlicerLibs)
+
+ set(dirs
+- tclap
+ ModuleDescriptionParser
+ GenerateCLP
+ LoadableModule
+diff -urNad slicer-3.4.0~svn9703~/Libs/FreeSurfer/CMakeLists.txt slicer-3.4.0~svn9703/Libs/FreeSurfer/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Libs/FreeSurfer/CMakeLists.txt 2008-05-21 19:25:36.000000000 -0400
++++ slicer-3.4.0~svn9703/Libs/FreeSurfer/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -68,9 +68,14 @@
+ vtkIOTCL
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Libs/GenerateCLP/CMakeLists.txt slicer-3.4.0~svn9703/Libs/GenerateCLP/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Libs/GenerateCLP/CMakeLists.txt 2008-05-27 18:36:34.000000000 -0400
++++ slicer-3.4.0~svn9703/Libs/GenerateCLP/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -11,10 +11,10 @@
+ include(${ModuleDescriptionParser_USE_FILE})
+ endif(ModuleDescriptionParser_FOUND)
+
+-find_package(TCLAP REQUIRED)
+-if(TCLAP_FOUND)
+- include(${TCLAP_USE_FILE})
+-endif(TCLAP_FOUND)
++#find_package(TCLAP REQUIRED)
++#if(TCLAP_FOUND)
++# include(${TCLAP_USE_FILE})
++#endif(TCLAP_FOUND)
+
+ find_package(ITK REQUIRED)
+ if(ITK_FOUND)
+diff -urNad slicer-3.4.0~svn9703~/Libs/GenerateCLP/UseGenerateCLP.cmake.in slicer-3.4.0~svn9703/Libs/GenerateCLP/UseGenerateCLP.cmake.in
+--- slicer-3.4.0~svn9703~/Libs/GenerateCLP/UseGenerateCLP.cmake.in 2008-05-26 11:07:36.000000000 -0400
++++ slicer-3.4.0~svn9703/Libs/GenerateCLP/UseGenerateCLP.cmake.in 2009-06-16 20:31:19.000000000 -0400
+@@ -5,10 +5,10 @@
+ message(FATAL_ERROR "Cannot build without ITK. Please set ITK_DIR.")
+ endif(ITK_FOUND)
+
+-find_package(TCLAP REQUIRED)
+-if(TCLAP_FOUND)
+- include(${TCLAP_USE_FILE})
+-endif(TCLAP_FOUND)
++#find_package(TCLAP REQUIRED)
++#if(TCLAP_FOUND)
++# include(${TCLAP_USE_FILE})
++#endif(TCLAP_FOUND)
+
+ find_package(ModuleDescriptionParser REQUIRED)
+ if(ModuleDescriptionParser_FOUND)
+diff -urNad slicer-3.4.0~svn9703~/Libs/IGT/CMakeLists.txt slicer-3.4.0~svn9703/Libs/IGT/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Libs/IGT/CMakeLists.txt 2008-05-21 19:25:36.000000000 -0400
++++ slicer-3.4.0~svn9703/Libs/IGT/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -139,9 +139,14 @@
+ ${TRACKING_INTERFACE_LIB}
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Libs/ITKCommandIO/CMakeLists.txt slicer-3.4.0~svn9703/Libs/ITKCommandIO/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Libs/ITKCommandIO/CMakeLists.txt 2008-05-28 00:38:39.000000000 -0400
++++ slicer-3.4.0~svn9703/Libs/ITKCommandIO/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -71,9 +71,14 @@
+ ITKIO
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Libs/LoadableModule/CMakeLists.txt slicer-3.4.0~svn9703/Libs/LoadableModule/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Libs/LoadableModule/CMakeLists.txt 2009-02-11 17:48:16.000000000 -0500
++++ slicer-3.4.0~svn9703/Libs/LoadableModule/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -116,9 +116,14 @@
+
+ target_link_libraries(${lib_name} ${link_libs})
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Libs/MGHImageIO/CMakeLists.txt slicer-3.4.0~svn9703/Libs/MGHImageIO/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Libs/MGHImageIO/CMakeLists.txt 2008-05-28 00:38:39.000000000 -0400
++++ slicer-3.4.0~svn9703/Libs/MGHImageIO/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -59,9 +59,14 @@
+ ITKIO
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Libs/MRML/CMakeLists.txt slicer-3.4.0~svn9703/Libs/MRML/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Libs/MRML/CMakeLists.txt 2009-02-27 17:28:47.000000000 -0500
++++ slicer-3.4.0~svn9703/Libs/MRML/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -237,9 +237,14 @@
+ endif(MRML_USE_vtkTeem)
+ endif(MRML_USE_Teem)
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Libs/MRMLIDImageIO/CMakeLists.txt slicer-3.4.0~svn9703/Libs/MRMLIDImageIO/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Libs/MRMLIDImageIO/CMakeLists.txt 2008-05-28 00:38:39.000000000 -0400
++++ slicer-3.4.0~svn9703/Libs/MRMLIDImageIO/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -78,9 +78,14 @@
+ vtkImaging
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Libs/ModuleDescriptionParser/CMakeLists.txt slicer-3.4.0~svn9703/Libs/ModuleDescriptionParser/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Libs/ModuleDescriptionParser/CMakeLists.txt 2009-02-11 17:48:16.000000000 -0500
++++ slicer-3.4.0~svn9703/Libs/ModuleDescriptionParser/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -120,9 +120,14 @@
+
+ target_link_libraries(${lib_name} ${link_libs})
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Libs/Qdec/CMakeLists.txt slicer-3.4.0~svn9703/Libs/Qdec/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Libs/Qdec/CMakeLists.txt 2008-05-31 13:31:15.000000000 -0400
++++ slicer-3.4.0~svn9703/Libs/Qdec/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -76,9 +76,14 @@
+ # vtkIOTCL
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Libs/Qdec/QdecContrast.cpp slicer-3.4.0~svn9703/Libs/Qdec/QdecContrast.cpp
+--- slicer-3.4.0~svn9703~/Libs/Qdec/QdecContrast.cpp 2009-05-19 18:25:04.000000000 -0400
++++ slicer-3.4.0~svn9703/Libs/Qdec/QdecContrast.cpp 2009-06-16 20:31:19.000000000 -0400
+@@ -16,6 +16,7 @@
+ #include <errno.h>
+ #include <sys/stat.h>
+ #include <cassert>
++#include <cstdio>
+
+ #include "QdecContrast.h"
+
+diff -urNad slicer-3.4.0~svn9703~/Libs/RemoteIO/CMakeLists.txt slicer-3.4.0~svn9703/Libs/RemoteIO/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Libs/RemoteIO/CMakeLists.txt 2008-10-10 10:41:24.000000000 -0400
++++ slicer-3.4.0~svn9703/Libs/RemoteIO/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -11,8 +11,11 @@
+ find_package(ITK REQUIRED)
+ include(${ITK_USE_FILE})
+
+-find_package(SLICERLIBCURL REQUIRED)
+-include(${SLICERLIBCURL_USE_FILE})
++find_package(CURL REQUIRED)
++if(CURL_FOUND)
++ # Add include directories needed to use CURL.
++ include_directories(${CURL_INCLUDE_DIRS})
++endif(CURL_FOUND)
+
+ # Disable MSVC 8 warnings
+ if(WIN32)
+@@ -100,13 +103,18 @@
+ vtkIOTCL
+ vtkCommonTCL
+ itksys
+- ${SLICERLIBCURL_LIBRARIES}
++ ${CURL_LIBRARIES}
+ MRML
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Libs/RemoteIO/vtkHTTPHandler.h slicer-3.4.0~svn9703/Libs/RemoteIO/vtkHTTPHandler.h
+--- slicer-3.4.0~svn9703~/Libs/RemoteIO/vtkHTTPHandler.h 2008-10-10 10:41:24.000000000 -0400
++++ slicer-3.4.0~svn9703/Libs/RemoteIO/vtkHTTPHandler.h 2009-06-16 20:31:19.000000000 -0400
+@@ -5,7 +5,7 @@
+ #pragma warning ( disable : 4786 )
+ #endif
+
+-#include <slicerlibcurl/slicerlibcurl.h>
++#include <curl/curl.h>
+
+ #include <vtkRemoteIOConfigure.h>
+ #include "vtkRemoteIO.h"
+diff -urNad slicer-3.4.0~svn9703~/Libs/SlicerIO/CMakeLists.txt slicer-3.4.0~svn9703/Libs/SlicerIO/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Libs/SlicerIO/CMakeLists.txt 2008-05-21 19:25:36.000000000 -0400
++++ slicer-3.4.0~svn9703/Libs/SlicerIO/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -48,7 +48,7 @@
+
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Libs/vtkITK/CMakeLists.txt slicer-3.4.0~svn9703/Libs/vtkITK/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Libs/vtkITK/CMakeLists.txt 2009-03-25 19:01:37.000000000 -0400
++++ slicer-3.4.0~svn9703/Libs/vtkITK/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -111,9 +111,14 @@
+ ITKDICOMParser
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Libs/vtkTeem/CMakeLists.txt slicer-3.4.0~svn9703/Libs/vtkTeem/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Libs/vtkTeem/CMakeLists.txt 2008-11-05 18:39:51.000000000 -0500
++++ slicer-3.4.0~svn9703/Libs/vtkTeem/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -111,9 +111,14 @@
+ ${Teem_LIBRARIES}
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${lib_name}
+ RUNTIME DESTINATION bin COMPONENT RuntimeLibraries
+- LIBRARY DESTINATION lib/${PROJECT_NAME} COMPONENT RuntimeLibraries
++ LIBRARY DESTINATION lib COMPONENT RuntimeLibraries
+ ARCHIVE DESTINATION lib/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Modules/CMakeLists.txt slicer-3.4.0~svn9703/Modules/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/CMakeLists.txt 2009-04-30 17:12:13.000000000 -0400
++++ slicer-3.4.0~svn9703/Modules/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -74,7 +74,7 @@
+ subdirs(
+ OpenIGTLinkIF
+ NeuroNav
+- ProstateNav
++# ProstateNav
+ )
+ endif(Slicer3_USE_OPENIGTLINK)
+
+diff -urNad slicer-3.4.0~svn9703~/Modules/ChangeTracker/CMakeLists.txt slicer-3.4.0~svn9703/Modules/ChangeTracker/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/ChangeTracker/CMakeLists.txt 2009-04-30 13:59:22.000000000 -0400
++++ slicer-3.4.0~svn9703/Modules/ChangeTracker/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -40,8 +40,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkChangeTrackerConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+@@ -114,6 +112,11 @@
+ )
+ slicer3_set_modules_output_path(${lib_name})
+
++set_target_properties(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ target_link_libraries(${lib_name}
+ ${Slicer3_Libs_LIBRARIES}
+ ${Slicer3_Base_LIBRARIES}
+diff -urNad slicer-3.4.0~svn9703~/Modules/CommandLineModule/CMakeLists.txt slicer-3.4.0~svn9703/Modules/CommandLineModule/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/CommandLineModule/CMakeLists.txt 2009-02-11 17:48:16.000000000 -0500
++++ slicer-3.4.0~svn9703/Modules/CommandLineModule/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -31,8 +31,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkCommandLineModuleConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+@@ -86,6 +84,11 @@
+ ${ITK_LIBRARIES}
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ # Python settings
+
+ if(Slicer3_USE_PYTHON)
+diff -urNad slicer-3.4.0~svn9703~/Modules/EMSegment/CMakeLists.txt slicer-3.4.0~svn9703/Modules/EMSegment/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/EMSegment/CMakeLists.txt 2008-05-27 18:44:06.000000000 -0400
++++ slicer-3.4.0~svn9703/Modules/EMSegment/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -44,8 +44,6 @@
+ "${CMAKE_CURRENT_SOURCE_DIR}/Registration/*.h"
+ )
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkEMSegmentConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+@@ -176,6 +174,11 @@
+ Volumes
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ slicer3_install_modules(${lib_name})
+
+ # --------------------------------------------------------------------------
+diff -urNad slicer-3.4.0~svn9703~/Modules/FetchMI/CMakeLists.txt slicer-3.4.0~svn9703/Modules/FetchMI/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/FetchMI/CMakeLists.txt 2009-02-26 14:03:13.000000000 -0500
++++ slicer-3.4.0~svn9703/Modules/FetchMI/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -33,8 +33,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkFetchMIConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Modules/GradientAnisotropicDiffusionFilter/CMakeLists.txt slicer-3.4.0~svn9703/Modules/GradientAnisotropicDiffusionFilter/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/GradientAnisotropicDiffusionFilter/CMakeLists.txt 2008-11-21 00:20:51.000000000 -0500
++++ slicer-3.4.0~svn9703/Modules/GradientAnisotropicDiffusionFilter/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -31,8 +31,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkGradientAnisotropicDiffusionFilterConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Modules/Meshing/Adapter/CMakeLists.txt slicer-3.4.0~svn9703/Modules/Meshing/Adapter/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/Meshing/Adapter/CMakeLists.txt 2008-12-11 12:55:09.000000000 -0500
++++ slicer-3.4.0~svn9703/Modules/Meshing/Adapter/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -58,6 +58,11 @@
+ ITKAlgorithms
+ )
+
++set_target_properties(${LIB_NAME} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${LIB_NAME}
+ RUNTIME DESTINATION ${Slicer3_INSTALL_BIN_DIR} COMPONENT RuntimeLibraries
+ LIBRARY DESTINATION ${Slicer3_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
+diff -urNad slicer-3.4.0~svn9703~/Modules/Meshing/BuildingBlock/CMakeLists.txt slicer-3.4.0~svn9703/Modules/Meshing/BuildingBlock/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/Meshing/BuildingBlock/CMakeLists.txt 2008-12-11 12:55:09.000000000 -0500
++++ slicer-3.4.0~svn9703/Modules/Meshing/BuildingBlock/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -173,6 +173,11 @@
+ ITKIO
+ ITKAlgorithms
+ )
++
++SET_TARGET_PROPERTIES(${LIB_NAME} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
+
+
+ #CONFIGURE_FILE(
+diff -urNad slicer-3.4.0~svn9703~/Modules/Meshing/Common/CMakeLists.txt slicer-3.4.0~svn9703/Modules/Meshing/Common/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/Meshing/Common/CMakeLists.txt 2008-12-24 10:07:19.000000000 -0500
++++ slicer-3.4.0~svn9703/Modules/Meshing/Common/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -156,6 +156,12 @@
+ MRML
+ )
+
++SET_TARGET_PROPERTIES(${LIB_NAME} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
++
+ install(TARGETS ${LIB_NAME}
+ RUNTIME DESTINATION ${Slicer3_INSTALL_BIN_DIR} COMPONENT RuntimeLibraries
+ LIBRARY DESTINATION ${Slicer3_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
+diff -urNad slicer-3.4.0~svn9703~/Modules/Meshing/Filter/CMakeLists.txt slicer-3.4.0~svn9703/Modules/Meshing/Filter/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/Meshing/Filter/CMakeLists.txt 2008-12-24 10:07:19.000000000 -0500
++++ slicer-3.4.0~svn9703/Modules/Meshing/Filter/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -102,6 +102,11 @@
+ ${KWWidgets_LIBRARIES}
+ )
+
++SET_TARGET_PROPERTIES(${LIB_NAME} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${LIB_NAME}
+ RUNTIME DESTINATION ${Slicer3_INSTALL_BIN_DIR} COMPONENT RuntimeLibraries
+ LIBRARY DESTINATION ${Slicer3_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
+diff -urNad slicer-3.4.0~svn9703~/Modules/Meshing/IA_FEMesh/CMakeLists.txt slicer-3.4.0~svn9703/Modules/Meshing/IA_FEMesh/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/Meshing/IA_FEMesh/CMakeLists.txt 2008-12-10 09:36:48.000000000 -0500
++++ slicer-3.4.0~svn9703/Modules/Meshing/IA_FEMesh/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -44,8 +44,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkIA_FEMeshConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Modules/Meshing/IO/CMakeLists.txt slicer-3.4.0~svn9703/Modules/Meshing/IO/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/Meshing/IO/CMakeLists.txt 2008-12-11 12:55:09.000000000 -0500
++++ slicer-3.4.0~svn9703/Modules/Meshing/IO/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -60,6 +60,11 @@
+ vtkRendering
+ )
+
++SET_TARGET_PROPERTIES(${LIB_NAME} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ install(TARGETS ${LIB_NAME}
+ RUNTIME DESTINATION ${Slicer3_INSTALL_BIN_DIR} COMPONENT RuntimeLibraries
+ LIBRARY DESTINATION ${Slicer3_INSTALL_LIB_DIR} COMPONENT RuntimeLibraries
+diff -urNad slicer-3.4.0~svn9703~/Modules/Meshing/Widgets/CMakeLists.txt slicer-3.4.0~svn9703/Modules/Meshing/Widgets/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/Meshing/Widgets/CMakeLists.txt 2008-12-11 12:55:09.000000000 -0500
++++ slicer-3.4.0~svn9703/Modules/Meshing/Widgets/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -107,6 +107,11 @@
+ mimxFilter
+ mimxCommon
+ )
++
++SET_TARGET_PROPERTIES(${LIB_NAME} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
+
+ install(TARGETS ${LIB_NAME}
+ RUNTIME DESTINATION ${Slicer3_INSTALL_BIN_DIR} COMPONENT RuntimeLibraries
+diff -urNad slicer-3.4.0~svn9703~/Modules/NeuroNav/CMakeLists.txt slicer-3.4.0~svn9703/Modules/NeuroNav/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/NeuroNav/CMakeLists.txt 2008-09-12 13:39:46.000000000 -0400
++++ slicer-3.4.0~svn9703/Modules/NeuroNav/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -40,8 +40,6 @@
+ "${CMAKE_CURRENT_SOURCE_DIR}/*.h"
+ )
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkNeuroNavConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Modules/OpenIGTLinkIF/CMakeLists.txt slicer-3.4.0~svn9703/Modules/OpenIGTLinkIF/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/OpenIGTLinkIF/CMakeLists.txt 2008-12-09 16:36:04.000000000 -0500
++++ slicer-3.4.0~svn9703/Modules/OpenIGTLinkIF/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -40,8 +40,6 @@
+ )
+
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkOpenIGTLinkIFConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+@@ -84,6 +82,10 @@
+ )
+ slicer3_set_modules_output_path(${lib_name})
+
++set_target_properties(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
+
+ target_link_libraries(${lib_name}
+ ${Slicer3_Libs_LIBRARIES}
+diff -urNad slicer-3.4.0~svn9703~/Modules/ProstateNav/CMakeLists.txt slicer-3.4.0~svn9703/Modules/ProstateNav/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/ProstateNav/CMakeLists.txt 2009-02-05 22:44:59.000000000 -0500
++++ slicer-3.4.0~svn9703/Modules/ProstateNav/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -17,12 +17,16 @@
+
+ # --------------------------------------------------------------------------
+ # Include dirs
++#find_package(OpenIGTLink REQUIRED)
++#include_directories(${OpenIGTLink_INCLUDE_DIRS})
+
+
+ #
+ # Include dirs
+ #
+
++include_directories( /usr/include/newmat )
++
+
+ include_directories(
+ ${CMAKE_CURRENT_SOURCE_DIR}
+@@ -82,32 +86,9 @@
+ ${CMAKE_CURRENT_SOURCE_DIR}/igtlHeaderMessage.cxx
+ ${CMAKE_CURRENT_SOURCE_DIR}/igtlMoveToMessage.cxx
+ ${CMAKE_CURRENT_SOURCE_DIR}/igtlSetZFrameMessage.cxx
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmat9.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmatrm.cpp
+ ${CMAKE_CURRENT_SOURCE_DIR}/newmat/nm_misc.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/bandmat.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmat1.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/solution.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/cholesky.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/hholder.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmat2.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmatex.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmat3.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/sort.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/evalue.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/jacobi.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmat4.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/submat.cpp
+ ${CMAKE_CURRENT_SOURCE_DIR}/newmat/example.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmat5.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/svd.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/myexcept.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmat6.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmatnl.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/fft.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmat7.cpp
+ ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newfft.cpp
+- ${CMAKE_CURRENT_SOURCE_DIR}/newmat/newmat8.cpp
+ ${CMAKE_CURRENT_SOURCE_DIR}/newmat/ZLinAlg.cxx
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Modules/ProstateNav/Wizard/vtkProstateNavCalibrationStep.h slicer-3.4.0~svn9703/Modules/ProstateNav/Wizard/vtkProstateNavCalibrationStep.h
+--- slicer-3.4.0~svn9703~/Modules/ProstateNav/Wizard/vtkProstateNavCalibrationStep.h 2009-02-04 14:15:57.000000000 -0500
++++ slicer-3.4.0~svn9703/Modules/ProstateNav/Wizard/vtkProstateNavCalibrationStep.h 2009-06-16 20:31:19.000000000 -0400
+@@ -37,6 +37,13 @@
+ class VTK_PROSTATENAV_EXPORT vtkProstateNavCalibrationStep : public vtkProstateNavStep
+ {
+ public:
++ //BTX
++ typedef NEWMAT::Matrix Matrix;
++ typedef NEWMAT::Real Real;
++ typedef NEWMAT::FFT2 FFT2;
++ typedef NEWMAT::FFT2I FFT2I;
++ //ETX
++
+ static vtkProstateNavCalibrationStep *New();
+ vtkTypeRevisionMacro(vtkProstateNavCalibrationStep,vtkProstateNavStep);
+ void PrintSelf(ostream& os, vtkIndent indent);
+diff -urNad slicer-3.4.0~svn9703~/Modules/QdecModule/CMakeLists.txt slicer-3.4.0~svn9703/Modules/QdecModule/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/QdecModule/CMakeLists.txt 2008-11-21 00:20:51.000000000 -0500
++++ slicer-3.4.0~svn9703/Modules/QdecModule/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -31,8 +31,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkQdecModuleConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+@@ -73,6 +71,11 @@
+ ${ITK_LIBRARIES}
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ slicer3_install_modules(${lib_name})
+
+ # --------------------------------------------------------------------------
+diff -urNad slicer-3.4.0~svn9703~/Modules/QueryAtlas/CMakeLists.txt slicer-3.4.0~svn9703/Modules/QueryAtlas/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/QueryAtlas/CMakeLists.txt 2008-11-21 00:20:51.000000000 -0500
++++ slicer-3.4.0~svn9703/Modules/QueryAtlas/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -42,14 +42,11 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkQueryAtlasConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/Resources/*.h")
+ install(FILES
+- ${headers}
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME}/Resources COMPONENT Development
+ )
+
+@@ -204,14 +201,14 @@
+ OntologyViz/extjars/prefuse.jar
+ )
+
+-foreach(file ${ONTOVIZFILES})
+- configure_file(
+- ${CMAKE_CURRENT_SOURCE_DIR}/${file}
+- ${CMAKE_BINARY_DIR}/${Slicer3_INSTALL_MODULES_LIB_DIR}/${PROJECT_NAME}/${file}
+- COPYONLY)
+- get_filename_component(path "${file}" PATH)
+- install(FILES
+- ${file}
+- DESTINATION ${Slicer3_INSTALL_MODULES_LIB_DIR}/${PROJECT_NAME}/${path} COMPONENT Development
+- )
+-endforeach(file)
++#foreach(file ${ONTOVIZFILES})
++# configure_file(
++# ${CMAKE_CURRENT_SOURCE_DIR}/${file}
++# ${CMAKE_BINARY_DIR}/${Slicer3_INSTALL_MODULES_LIB_DIR}/${PROJECT_NAME}/${file}
++# COPYONLY)
++# get_filename_component(path "${file}" PATH)
++# install(FILES
++# ${file}
++# DESTINATION ${Slicer3_INSTALL_MODULES_LIB_DIR}/${PROJECT_NAME}/${path} COMPONENT Development
++# )
++#endforeach(file)
+diff -urNad slicer-3.4.0~svn9703~/Modules/RealTimeImaging/CMakeLists.txt slicer-3.4.0~svn9703/Modules/RealTimeImaging/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/RealTimeImaging/CMakeLists.txt 2008-05-27 18:44:06.000000000 -0400
++++ slicer-3.4.0~svn9703/Modules/RealTimeImaging/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -32,7 +32,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+ "${CMAKE_CURRENT_BINARY_DIR}/vtkRealTimeImagingConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+diff -urNad slicer-3.4.0~svn9703~/Modules/ScriptedModule/CMakeLists.txt slicer-3.4.0~svn9703/Modules/ScriptedModule/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/ScriptedModule/CMakeLists.txt 2009-02-11 17:48:16.000000000 -0500
++++ slicer-3.4.0~svn9703/Modules/ScriptedModule/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -31,8 +31,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkScriptedModuleConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+@@ -68,6 +66,11 @@
+ ${ITK_LIBRARIES}
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ # Python settings
+
+ if(Slicer3_USE_PYTHON)
+diff -urNad slicer-3.4.0~svn9703~/Modules/SlicerDaemon/CMakeLists.txt slicer-3.4.0~svn9703/Modules/SlicerDaemon/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/SlicerDaemon/CMakeLists.txt 2008-12-08 04:31:27.000000000 -0500
++++ slicer-3.4.0~svn9703/Modules/SlicerDaemon/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -31,8 +31,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkSlicerDaemonConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+@@ -69,6 +67,11 @@
+ ${ITK_LIBRARIES}
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ slicer3_install_modules(${lib_name})
+
+ # --------------------------------------------------------------------------
+diff -urNad slicer-3.4.0~svn9703~/Modules/SlicerWelcome/CMakeLists.txt slicer-3.4.0~svn9703/Modules/SlicerWelcome/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/SlicerWelcome/CMakeLists.txt 2009-03-27 15:12:39.000000000 -0400
++++ slicer-3.4.0~svn9703/Modules/SlicerWelcome/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -37,8 +37,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkSlicerWelcomeConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Modules/Statistics/LabelStatistics/CMakeLists.txt slicer-3.4.0~svn9703/Modules/Statistics/LabelStatistics/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/Statistics/LabelStatistics/CMakeLists.txt 2008-05-27 18:44:06.000000000 -0400
++++ slicer-3.4.0~svn9703/Modules/Statistics/LabelStatistics/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -31,8 +31,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkLabelStatisticsConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Modules/Tractography/Display/CMakeLists.txt slicer-3.4.0~svn9703/Modules/Tractography/Display/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/Tractography/Display/CMakeLists.txt 2008-07-10 22:39:00.000000000 -0400
++++ slicer-3.4.0~svn9703/Modules/Tractography/Display/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -31,14 +31,11 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkSlicerTractographyDisplayConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/Resources/*.h")
+ install(FILES
+- ${headers}
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME}/Resources COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Modules/Tractography/FiducialSeeding/CMakeLists.txt slicer-3.4.0~svn9703/Modules/Tractography/FiducialSeeding/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/Tractography/FiducialSeeding/CMakeLists.txt 2008-07-30 19:34:00.000000000 -0400
++++ slicer-3.4.0~svn9703/Modules/Tractography/FiducialSeeding/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -31,8 +31,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkSlicerTractographyFiducialSeedingConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+@@ -75,6 +73,11 @@
+ ${ITK_LIBRARIES}
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ slicer3_install_modules(${lib_name})
+
+ # --------------------------------------------------------------------------
+diff -urNad slicer-3.4.0~svn9703~/Modules/Tractography/Seeding/CMakeLists.txt slicer-3.4.0~svn9703/Modules/Tractography/Seeding/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/Tractography/Seeding/CMakeLists.txt 2008-05-27 18:44:06.000000000 -0400
++++ slicer-3.4.0~svn9703/Modules/Tractography/Seeding/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -31,8 +31,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkSlicerTractographySeedingConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Modules/VolumeRendering/CMakeLists.txt slicer-3.4.0~svn9703/Modules/VolumeRendering/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/VolumeRendering/CMakeLists.txt 2009-01-20 16:30:19.000000000 -0500
++++ slicer-3.4.0~svn9703/Modules/VolumeRendering/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -33,8 +33,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkVolumeRenderingConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+diff -urNad slicer-3.4.0~svn9703~/Modules/VolumeRendering/VolumeRenderingReplacements/CMakeLists.txt slicer-3.4.0~svn9703/Modules/VolumeRendering/VolumeRenderingReplacements/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/VolumeRendering/VolumeRenderingReplacements/CMakeLists.txt 2009-01-07 14:02:39.000000000 -0500
++++ slicer-3.4.0~svn9703/Modules/VolumeRendering/VolumeRenderingReplacements/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -31,8 +31,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkVolumeRenderingReplacementsConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+@@ -88,4 +86,9 @@
+ ${ITK_LIBRARIES}
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ slicer3_install_modules(${lib_name})
+diff -urNad slicer-3.4.0~svn9703~/Modules/Volumes/CMakeLists.txt slicer-3.4.0~svn9703/Modules/Volumes/CMakeLists.txt
+--- slicer-3.4.0~svn9703~/Modules/Volumes/CMakeLists.txt 2009-01-20 17:30:16.000000000 -0500
++++ slicer-3.4.0~svn9703/Modules/Volumes/CMakeLists.txt 2009-06-16 20:31:19.000000000 -0400
+@@ -37,8 +37,6 @@
+
+ file(GLOB headers "${CMAKE_CURRENT_SOURCE_DIR}/*.h")
+ install(FILES
+- ${headers}
+- "${CMAKE_CURRENT_BINARY_DIR}/vtkVolumesConfigure.h"
+ DESTINATION ${Slicer3_INSTALL_MODULES_INCLUDE_DIR}/${PROJECT_NAME} COMPONENT Development
+ )
+
+@@ -98,6 +96,11 @@
+ SlicerTractographyFiducialSeeding
+ )
+
++SET_TARGET_PROPERTIES(${lib_name} PROPERTIES
++ SOVERSION ${Slicer3_SHAREDLIB_SOVERSION}
++ VERSION ${Slicer3_SHAREDLIB_VERSION}
++)
++
+ slicer3_install_modules(${lib_name})
+
+ # --------------------------------------------------------------------------
Added: packages/slicer/tags/3.4.0~svn9703-1/rules
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn9703-1/rules?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn9703-1/rules (added)
+++ packages/slicer/tags/3.4.0~svn9703-1/rules Mon Aug 10 00:09:16 2009
@@ -1,0 +1,165 @@
+#!/usr/bin/make -f
+
+PACKAGE=slicer
+
+# DPatch
+DEB_SOURCE_PACKAGE:=$(PACKAGE)
+include /usr/share/dpatch/dpatch.make
+
+
+# Uncomment this to turn on verbose mode.
+export DH_VERBOSE=0
+
+# set the number of build jobs
+ifneq (,$(filter parallel=%,$(DEB_BUILD_OPTIONS)))
+ JOBS := -j$(patsubst parallel=%,%,$(filter parallel=%,$(DEB_BUILD_OPTIONS)))
+endif
+
+# set optimization mode
+ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
+ CFLAGS += -O0
+else
+ CFLAGS += -O2
+endif
+
+export LD_LIBRARY_PATH+=:$(CURDIR)/DEB_build_shared/bin
+
+# set shared build path
+SHARED_BUILD_PATH = DEB_build_shared
+
+CMAKE_FLAGS = -DCMAKE_INSTALL_PREFIX:PATH=/usr \
+ -DCMAKE_CXX_FLAGS:STRING=-Wno-deprecated \
+ -DCMAKE_CXX_FLAGS=$(CFLAGS) \
+ -DCMAKE_BUILD_TYPE:STRING=Debug \
+ -DCMAKE_VERBOSE_MAKEFILE:BOOL=$(DH_VERBOSE) \
+ -DVOLUMERENDERINGMODULE:BOOL=ON \
+ -DCMAKE_SKIP_RPATH:BOOL=OFF \
+ -DBUILD_TESTING:BOOL=OFF \
+ -DCMAKE_SHARED_LINKER_FLAGS:STRING=-Wl,--as-needed \
+ -DCMAKE_EXE_LINKER_FLAGS:STRING=-Wl,--as-needed \
+ -DSlicer3_USE_IGSTK:BOOL=OFF \
+ -DSlicer3_USE_OPENIGTLINK:BOOL=ON \
+ -DSlicer3_USE_MIDAS:BOOL=ON \
+
+
+get-orig-source:
+ /bin/sh $(CURDIR)/debian/get-orig-source
+
+configure: configure-stamp
+configure-stamp: patch-stamp
+ dh_testdir
+ # Add here commands to configure the package.
+
+ if [ ! -d $(SHARED_BUILD_PATH) ]; then mkdir $(SHARED_BUILD_PATH); fi
+ cd $(SHARED_BUILD_PATH) \
+ && cmake $(CURDIR) $(CMAKE_FLAGS) -DBUILD_SHARED_LIBS:BOOL=ON
+
+ cd $(SHARED_BUILD_PATH) \
+ && cmake $(CURDIR) $(CMAKE_FLAGS) -DBUILD_SHARED_LIBS:BOOL=ON
+
+ touch $@
+
+
+build: build-stamp
+build-stamp: configure
+ dh_testdir
+
+ # Add here commands to compile the package.
+
+ # build shared libs and binaries
+ cd $(SHARED_BUILD_PATH) && $(MAKE) $(JOBS)
+
+ #docbook-to-man debian/slicer.sgml > slicer.1
+
+ touch $@
+
+
+clean: clean-patched unpatch
+
+clean-patched:
+ dh_testdir
+ dh_testroot
+ rm -f build-stamp configure-stamp install-stamp
+
+ # Add here commands to clean up after the build process.
+ rm -rf $(SHARED_BUILD_PATH)
+
+ dh_clean --exclude ./Libs/FreeSurfer/Testing/TestData/lh.dart.orig
+
+install: install-stamp
+install-stamp: build-stamp
+ dh_testdir
+ dh_testroot
+ dh_prep --exclude ./Libs/FreeSurfer/Testing/TestData/lh.dart.orig
+ dh_installdirs
+
+ # Add here commands to install the package into debian/slicer.
+
+ # install binaries and shared libs
+ cd $(SHARED_BUILD_PATH) && $(MAKE) install DESTDIR=$(CURDIR)/debian/tmp
+
+ # remove empty directories
+ rmdir $(CURDIR)/debian/tmp/usr/share/Slicer3/Modules/EMSegment/Testing/TestData/TutorialTest2/VolumeData/Working/
+ rmdir $(CURDIR)/debian/tmp/usr/share/Slicer3/Modules/ModelIntoLabelVolume/Testing/TestData/
+ rmdir $(CURDIR)/debian/tmp/usr/share/Slicer3/Modules/ModelIntoLabelVolume/Testing/
+ rmdir $(CURDIR)/debian/tmp/usr/share/Slicer3/Modules/ModelIntoLabelVolume/
+ chmod +x $(CURDIR)/debian/tmp/usr/lib/Slicer3/Modules/SlicerDaemon/Tcl/slicerget.tcl
+ chmod +x $(CURDIR)/debian/tmp/usr/lib/Slicer3/Modules/SlicerDaemon/Tcl/slicerput.tcl
+ chmod +x $(CURDIR)/debian/tmp/usr/lib/Slicer3/Modules/SlicerDaemon/Tcl/tracker/tracker.tcl
+ chmod +x $(CURDIR)/debian/tmp/usr/lib/Slicer3/SlicerBaseGUI/Tcl/ExternalProgress.tcl
+ chmod +x $(CURDIR)/debian/tmp/usr/lib/Slicer3/launch.tcl
+ chmod +x $(CURDIR)/debian/tmp/usr/share/FreeSurfer/Testing/fips2mrml.tcl
+ chmod +x $(CURDIR)/debian/tmp/usr/share/Slicer3/Modules/ChangeTracker/Simulation/create_artificial_growth_deformation.sh
+ chmod +x $(CURDIR)/debian/tmp/usr/share/Slicer3/Modules/QueryAtlas/Tcl/QueryAtlasFips2Mrml.tcl
+ chmod -x $(CURDIR)/Utilities/Launcher/3DSlicerLogoICOimages/3DSlicerLogo-DesktopIcon-48x48x256.png
+
+ dh_install --sourcedir=$(CURDIR)/debian/tmp --fail-missing
+
+ touch $@
+
+
+# Build architecture-independent files here.
+binary-indep: install
+ dh_testdir -i
+ dh_testroot -i
+ dh_installchangelogs -i
+ dh_installdocs -i
+ dh_installexamples -i
+ dh_lintian -i
+ dh_installman -i
+ dh_link -i
+ dh_strip -i
+ dh_compress -i
+ dh_fixperms -i
+ dh_makeshlibs -i
+ dh_installdeb -i
+ dh_shlibdeps -i
+ dh_gencontrol -i
+ dh_md5sums -i
+ dh_builddeb -i
+
+
+
+# Build architecture-dependent files here.
+binary-arch: install
+ dh_testdir -a
+ dh_testroot -a
+ dh_installchangelogs -a
+ dh_installdocs -a
+ dh_installexamples -a
+ dh_lintian -a
+ dh_installman -a
+ dh_installmenu -a
+ dh_link -a
+ dh_strip -a
+ dh_compress -a
+ dh_fixperms -a
+ dh_makeshlibs -a -plibslicer3
+ dh_installdeb -a
+ dh_shlibdeps -a -l $(CURDIR)/debian/tmp/usr/lib:$(CURDIR)/debian/tmp/usr/lib/Slicer3:$(CURDIR)/debian/tmp/usr/lib/Slicer3/Modules
+ dh_gencontrol -a
+ dh_md5sums -a
+ dh_builddeb -a
+
+binary: binary-indep binary-arch
+.PHONY: build clean binary-indep binary-arch binary install configure
Propchange: packages/slicer/tags/3.4.0~svn9703-1/rules
------------------------------------------------------------------------------
svn:executable = *
Added: packages/slicer/tags/3.4.0~svn9703-1/shlibs.local
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn9703-1/shlibs.local?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn9703-1/shlibs.local (added)
+++ packages/slicer/tags/3.4.0~svn9703-1/shlibs.local Mon Aug 10 00:09:16 2009
@@ -1,0 +1,30 @@
+libLoadableModule 3 libslicer3 (>= 3.0.0-1)
+libModuleDescriptionParser 3 libslicer3 (>= 3.0.0-1)
+libSlicerBaseLogic 3 libslicer3 (>= 3.0.0-1)
+libMRML 3 libslicer3 (>= 3.0.0-1)
+libFreeSurfer 3 libslicer3 (>= 3.0.0-1)
+libIGT 3 libslicer3 (>= 3.0.0-1)
+libRemoteIO 3 libslicer3 (>= 3.0.0-1)
+libCommandLineModule 3 libslicer3 (>= 3.0.0-1)
+libvtkITK 3 libslicer3 (>= 3.0.0-1)
+libvtkTeem 3 libslicer3 (>= 3.0.0-1)
+libSlicerBaseCLI 3 libslicer3 (>= 3.0.0-1)
+libScriptedModule 3 libslicer3 (>= 3.0.0-1)
+libSlicerDaemon 3 libslicer3 (>= 3.0.0-1)
+libSlicerBaseGUI 3 libslicer3 (>= 3.0.0-1)
+libEMSegment 3 libslicer3 (>= 3.0.0-1)
+libQueryAtlas 3 libslicer3 (>= 3.0.0-1)
+libQdecModule 3 libslicer3 (>= 3.0.0-1)
+libVolumes 3 libslicer3 (>= 3.0.0-1)
+libVolumeRenderingReplacements 3 libslicer3 (>= 3.0.0-1)
+libSlicerTractographyFiducialSeeding 3 libslicer3 (>= 3.0.0-1)
+libmimxMeshIO 3 libslicer3 (>= 3.0.0-1)
+libmimxFilter 3 libslicer3 (>= 3.0.0-1)
+libmimxCommon 3 libslicer3 (>= 3.0.0-1)
+libmimxWidgets 3 libslicer3 (>= 3.0.0-1)
+libBuildingBlock 3 libslicer3 (>= 3.0.0-1)
+libQdec 3 libslicer3 (>= 3.0.0-1)
+libMRMLIDIO 3 libslicer3 (>= 3.0.0-1)
+libMGHIO 3 libslicer3 (>= 3.0.0-1)
+libOpenIGTLinkIF 3 libslicer3 (>= 3.0.0-1)
+libChangeTracker 3 libslicer3 (>= 3.0.0-1)
Added: packages/slicer/tags/3.4.0~svn9703-1/slicer-data.install
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn9703-1/slicer-data.install?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn9703-1/slicer-data.install (added)
+++ packages/slicer/tags/3.4.0~svn9703-1/slicer-data.install Mon Aug 10 00:09:16 2009
@@ -1,0 +1,1 @@
+usr/share
Added: packages/slicer/tags/3.4.0~svn9703-1/slicer.desktop
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn9703-1/slicer.desktop?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn9703-1/slicer.desktop (added)
+++ packages/slicer/tags/3.4.0~svn9703-1/slicer.desktop Mon Aug 10 00:09:16 2009
@@ -1,0 +1,10 @@
+[Desktop Entry]
+Name=3D Slicer
+Comment=Start 3D Slicer
+Exec=/usr/bin/slicer3
+Type=Application
+Icon=3DSlicerLogo-DesktopIcon-48x48x256.png
+StartupNotify=true
+Categories=Graphics;MedicalSoftware;
+X-Desktop-File-Install-Version=
+MimeType=
Added: packages/slicer/tags/3.4.0~svn9703-1/slicer.install
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn9703-1/slicer.install?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn9703-1/slicer.install (added)
+++ packages/slicer/tags/3.4.0~svn9703-1/slicer.install Mon Aug 10 00:09:16 2009
@@ -1,0 +1,68 @@
+usr/lib/Slicer3/Modules/Editor
+usr/lib/Slicer3/Modules/SlicerDaemon
+usr/lib/Slicer3/Modules/ScriptedModuleExample
+usr/lib/Slicer3/Modules/ClipModel
+usr/lib/Slicer3/Modules/ModelIntoLabelVolume
+usr/lib/Slicer3/SlicerBaseGUI
+usr/lib/Slicer3/Plugins/ExtractSkeleton
+usr/lib/Slicer3/Plugins/ResampleDTI
+usr/lib/Slicer3/Plugins/ExecutionModelTour
+usr/lib/Slicer3/Plugins/DemonsRegistration
+usr/lib/Slicer3/Plugins/VotingBinaryHoleFillingImageFilter
+usr/lib/Slicer3/Plugins/ModelMaker
+usr/lib/Slicer3/Plugins/DiffusionTensorEstimation
+usr/lib/Slicer3/Plugins/Seeding
+usr/lib/Slicer3/Plugins/OtsuThresholdImageFilter
+usr/lib/Slicer3/Plugins/jointLMMSE
+usr/lib/Slicer3/Plugins/OrientImage
+usr/lib/Slicer3/Plugins/Subtract
+usr/lib/Slicer3/Plugins/ResampleVolume
+usr/lib/Slicer3/Plugins/RigidRegistration
+usr/lib/Slicer3/Plugins/DWIDicomLoad
+usr/lib/Slicer3/Plugins/dwiNoiseFilter
+usr/lib/Slicer3/Plugins/CurvatureAnisotropicDiffusion
+usr/lib/Slicer3/Plugins/ZeroCrossingBasedEdgeDetectionImageFilter
+usr/lib/Slicer3/Plugins/ConfidenceConnected
+usr/lib/Slicer3/Plugins/OtsuThresholdSegmentation
+usr/lib/Slicer3/Plugins/SparseFieldLevelSetContour
+usr/lib/Slicer3/Plugins/ResampleVolume2
+usr/lib/Slicer3/Plugins/EMSegmentCommandLine
+usr/lib/Slicer3/Plugins/Add
+usr/lib/Slicer3/Plugins/ImageReadDicomWrite
+usr/lib/Slicer3/Plugins/AffineRegistration
+usr/lib/Slicer3/Plugins/LabelMapSmoothing
+usr/lib/Slicer3/Plugins/Realign
+usr/lib/Slicer3/Plugins/GaussianBlurImageFilter
+usr/lib/Slicer3/Plugins/GrayscaleFillHoleImageFilter
+usr/lib/Slicer3/Plugins/DiffusionTensorMathematics
+usr/lib/Slicer3/Plugins/EMSegmentCommandLine_GUIVersion
+usr/lib/Slicer3/Plugins/MedianImageFilter
+usr/lib/Slicer3/Plugins/GradientAnisotropicDiffusion
+usr/lib/Slicer3/Plugins/GrayscaleGrindPeakImageFilter
+usr/lib/Slicer3/Plugins/HistogramMatching
+usr/lib/Slicer3/Plugins/GrayscaleModelMaker
+usr/lib/Slicer3/Plugins/LinearRegistration
+usr/lib/Slicer3/Plugins/Threshold
+usr/lib/Slicer3/Plugins/DicomToNrrdConverter
+usr/lib/Slicer3/Plugins/BSplineDeformableRegistration
+usr/lib/Slicer3/Plugins/FreesurferSurfaceSectionExtraction
+usr/lib/Slicer3/Plugins/ImageLabelCombine
+usr/lib/Slicer3/Plugins/dwiUNLM
+usr/lib/Slicer3/Plugins/DownloadSlicerTutorials
+usr/bin/DetectGrowthSegmentation
+usr/bin/applyDeformationITK
+usr/bin/GenerateCLP
+usr/bin/Slicer3-real
+usr/bin/ChangeTrackerCommandLine
+usr/bin/GenerateLMLauncher
+usr/bin/DetectGrowth
+usr/bin/Slicer3
+usr/bin/GenerateLM
+usr/bin/GenerateCLPLauncher
+usr/lib/Slicer3/launch.tcl
+usr/lib/Qdec/vtkFreeSurferReaders.tcl
+usr/lib/Slicer3/Modules/FetchMI/Tcl/FetchMIXMLUtilities.tcl
+usr/lib/Slicer3/Modules/lib*.so.*
+../../Utilities/Launcher/3DSlicerLogoICOimages/3DSlicerLogo-DesktopIcon-48x48x256.png usr/share/pixmaps
+../../debian/slicer.desktop usr/share/applications
+../../debian/slicer3 usr/bin
Added: packages/slicer/tags/3.4.0~svn9703-1/slicer3
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn9703-1/slicer3?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn9703-1/slicer3 (added)
+++ packages/slicer/tags/3.4.0~svn9703-1/slicer3 Mon Aug 10 00:09:16 2009
@@ -1,0 +1,7 @@
+#!/bin/sh
+
+export TK_LIBRARY=/usr/share/tcltk/tk8.4/
+
+/usr/bin/Slicer3 $*
+
+exit 0
Added: packages/slicer/tags/3.4.0~svn9703-1/watch
URL: http://svn.debian.org/wsvn/debian-science/packages/slicer/tags/3.4.0%7Esvn9703-1/watch?rev=35788&op=file
==============================================================================
--- packages/slicer/tags/3.4.0~svn9703-1/watch (added)
+++ packages/slicer/tags/3.4.0~svn9703-1/watch Mon Aug 10 00:09:16 2009
@@ -1,0 +1,4 @@
+version=3
+opts=uversionmangle=s/^/3.4.0~svn/,filenamemangle=s/.*rev=(\d+)&.*/slicer_3.4.0~svn$1.orig.tar.gz/ \
+http://viewvc.slicer.org/viewcvs.cgi/branches/Slicer-3-4/ ^/viewcvs.cgi\?rev=(\d+)&view=rev$ \
+ debian /bin/sh debian/get-orig-source
More information about the debian-science-commits
mailing list