r38472 - in /packages/teem/tags/1.11.0~svn4425-2: ./ debian/ debian/man/ debian/patches/ debian/source/
domibel-guest at users.alioth.debian.org
domibel-guest at users.alioth.debian.org
Sun May 8 05:07:39 UTC 2011
Author: domibel-guest
Date: Sun May 8 05:07:29 2011
New Revision: 38472
URL: http://svn.debian.org/wsvn/debian-science/?sc=1&rev=38472
Log:
tagging teem 1.11.0~svn4425-2
Added:
packages/teem/tags/1.11.0~svn4425-2/
packages/teem/tags/1.11.0~svn4425-2/debian/
packages/teem/tags/1.11.0~svn4425-2/debian/Doxyfile
packages/teem/tags/1.11.0~svn4425-2/debian/Notes
packages/teem/tags/1.11.0~svn4425-2/debian/changelog
packages/teem/tags/1.11.0~svn4425-2/debian/compat
packages/teem/tags/1.11.0~svn4425-2/debian/control
packages/teem/tags/1.11.0~svn4425-2/debian/copyright
packages/teem/tags/1.11.0~svn4425-2/debian/docs
packages/teem/tags/1.11.0~svn4425-2/debian/get-orig-source
packages/teem/tags/1.11.0~svn4425-2/debian/man/
packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-gprobe.1
packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-miter.1
packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-mrender.1
packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-nrrdSanity.1
packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-overrgb.1
packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-tend.1
packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-unu.1
packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-vprobe.1
packages/teem/tags/1.11.0~svn4425-2/debian/man/teem.1
packages/teem/tags/1.11.0~svn4425-2/debian/patches/
packages/teem/tags/1.11.0~svn4425-2/debian/patches/debian-changes-1.11.0~svn4425-1
packages/teem/tags/1.11.0~svn4425-2/debian/patches/series
packages/teem/tags/1.11.0~svn4425-2/debian/rules (with props)
packages/teem/tags/1.11.0~svn4425-2/debian/source/
packages/teem/tags/1.11.0~svn4425-2/debian/source/format
packages/teem/tags/1.11.0~svn4425-2/debian/teem-apps.manpages
packages/teem/tags/1.11.0~svn4425-2/debian/teem-doc.doc-base
packages/teem/tags/1.11.0~svn4425-2/debian/watch
Added: packages/teem/tags/1.11.0~svn4425-2/debian/Doxyfile
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/Doxyfile?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/Doxyfile (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/Doxyfile Sun May 8 05:07:29 2011
@@ -1,0 +1,328 @@
+# Doxyfile 1.7.1
+
+#---------------------------------------------------------------------------
+# Project related configuration options
+#---------------------------------------------------------------------------
+DOXYFILE_ENCODING = UTF-8
+PROJECT_NAME = Teem
+PROJECT_NUMBER = "1.10.0"
+OUTPUT_DIRECTORY = doc
+CREATE_SUBDIRS = NO
+OUTPUT_LANGUAGE = English
+BRIEF_MEMBER_DESC = YES
+REPEAT_BRIEF = YES
+ABBREVIATE_BRIEF = "The $name class" \
+ "The $name widget" \
+ "The $name file" \
+ is \
+ provides \
+ specifies \
+ contains \
+ represents \
+ a \
+ an \
+ the
+ALWAYS_DETAILED_SEC = NO
+INLINE_INHERITED_MEMB = NO
+FULL_PATH_NAMES = YES
+STRIP_FROM_PATH =
+STRIP_FROM_INC_PATH =
+SHORT_NAMES = NO
+JAVADOC_AUTOBRIEF = NO
+QT_AUTOBRIEF = NO
+MULTILINE_CPP_IS_BRIEF = NO
+INHERIT_DOCS = YES
+SEPARATE_MEMBER_PAGES = NO
+TAB_SIZE = 8
+ALIASES =
+OPTIMIZE_OUTPUT_FOR_C = YES
+OPTIMIZE_OUTPUT_JAVA = NO
+OPTIMIZE_FOR_FORTRAN = NO
+OPTIMIZE_OUTPUT_VHDL = NO
+EXTENSION_MAPPING =
+BUILTIN_STL_SUPPORT = NO
+CPP_CLI_SUPPORT = NO
+SIP_SUPPORT = NO
+IDL_PROPERTY_SUPPORT = YES
+DISTRIBUTE_GROUP_DOC = NO
+SUBGROUPING = YES
+TYPEDEF_HIDES_STRUCT = NO
+SYMBOL_CACHE_SIZE = 0
+#---------------------------------------------------------------------------
+# Build related configuration options
+#---------------------------------------------------------------------------
+EXTRACT_ALL = YES
+EXTRACT_PRIVATE = YES
+EXTRACT_STATIC = YES
+EXTRACT_LOCAL_CLASSES = YES
+EXTRACT_LOCAL_METHODS = NO
+EXTRACT_ANON_NSPACES = NO
+HIDE_UNDOC_MEMBERS = NO
+HIDE_UNDOC_CLASSES = NO
+HIDE_FRIEND_COMPOUNDS = NO
+HIDE_IN_BODY_DOCS = NO
+INTERNAL_DOCS = NO
+CASE_SENSE_NAMES = YES
+HIDE_SCOPE_NAMES = NO
+SHOW_INCLUDE_FILES = YES
+FORCE_LOCAL_INCLUDES = NO
+INLINE_INFO = YES
+SORT_MEMBER_DOCS = YES
+SORT_BRIEF_DOCS = NO
+SORT_MEMBERS_CTORS_1ST = NO
+SORT_GROUP_NAMES = NO
+SORT_BY_SCOPE_NAME = NO
+GENERATE_TODOLIST = YES
+GENERATE_TESTLIST = YES
+GENERATE_BUGLIST = YES
+GENERATE_DEPRECATEDLIST= YES
+ENABLED_SECTIONS =
+MAX_INITIALIZER_LINES = 30
+SHOW_USED_FILES = YES
+SHOW_DIRECTORIES = NO
+SHOW_FILES = YES
+SHOW_NAMESPACES = YES
+FILE_VERSION_FILTER =
+LAYOUT_FILE =
+#---------------------------------------------------------------------------
+# configuration options related to warning and progress messages
+#---------------------------------------------------------------------------
+QUIET = NO
+WARNINGS = YES
+WARN_IF_UNDOCUMENTED = YES
+WARN_IF_DOC_ERROR = YES
+WARN_NO_PARAMDOC = NO
+WARN_FORMAT = "$file:$line: $text"
+WARN_LOGFILE =
+#---------------------------------------------------------------------------
+# configuration options related to the input files
+#---------------------------------------------------------------------------
+INPUT = src
+INPUT_ENCODING = UTF-8
+FILE_PATTERNS = *.c \
+ *.cc \
+ *.cxx \
+ *.cpp \
+ *.c++ \
+ *.d \
+ *.java \
+ *.ii \
+ *.ixx \
+ *.ipp \
+ *.i++ \
+ *.inl \
+ *.h \
+ *.hh \
+ *.hxx \
+ *.hpp \
+ *.h++ \
+ *.idl \
+ *.odl \
+ *.cs \
+ *.php \
+ *.php3 \
+ *.inc \
+ *.m \
+ *.mm \
+ *.dox \
+ *.py \
+ *.f90 \
+ *.f \
+ *.vhd \
+ *.vhdl \
+ *.C \
+ *.CC \
+ *.C++ \
+ *.II \
+ *.I++ \
+ *.H \
+ *.HH \
+ *.H++ \
+ *.CS \
+ *.PHP \
+ *.PHP3 \
+ *.M \
+ *.MM \
+ *.PY \
+ *.F90 \
+ *.F \
+ *.VHD \
+ *.VHDL
+RECURSIVE = YES
+EXCLUDE =
+EXCLUDE_SYMLINKS = NO
+EXCLUDE_PATTERNS =
+EXCLUDE_SYMBOLS =
+EXAMPLE_PATH =
+EXAMPLE_PATTERNS = *
+EXAMPLE_RECURSIVE = NO
+IMAGE_PATH =
+INPUT_FILTER =
+FILTER_PATTERNS =
+FILTER_SOURCE_FILES = NO
+#---------------------------------------------------------------------------
+# configuration options related to source browsing
+#---------------------------------------------------------------------------
+SOURCE_BROWSER = NO
+INLINE_SOURCES = NO
+STRIP_CODE_COMMENTS = YES
+REFERENCED_BY_RELATION = NO
+REFERENCES_RELATION = NO
+REFERENCES_LINK_SOURCE = YES
+USE_HTAGS = NO
+VERBATIM_HEADERS = NO
+#---------------------------------------------------------------------------
+# configuration options related to the alphabetical class index
+#---------------------------------------------------------------------------
+ALPHABETICAL_INDEX = NO
+COLS_IN_ALPHA_INDEX = 5
+IGNORE_PREFIX =
+#---------------------------------------------------------------------------
+# configuration options related to the HTML output
+#---------------------------------------------------------------------------
+GENERATE_HTML = YES
+HTML_OUTPUT = html
+HTML_FILE_EXTENSION = .html
+HTML_HEADER =
+HTML_FOOTER =
+HTML_STYLESHEET =
+HTML_COLORSTYLE_HUE = 220
+HTML_COLORSTYLE_SAT = 100
+HTML_COLORSTYLE_GAMMA = 80
+HTML_TIMESTAMP = YES
+HTML_ALIGN_MEMBERS = YES
+HTML_DYNAMIC_SECTIONS = NO
+GENERATE_DOCSET = NO
+DOCSET_FEEDNAME = "Doxygen generated docs"
+DOCSET_BUNDLE_ID = org.doxygen.Project
+DOCSET_PUBLISHER_ID = org.doxygen.Publisher
+DOCSET_PUBLISHER_NAME = Publisher
+GENERATE_HTMLHELP = NO
+CHM_FILE =
+HHC_LOCATION =
+GENERATE_CHI = NO
+CHM_INDEX_ENCODING =
+BINARY_TOC = NO
+TOC_EXPAND = NO
+GENERATE_QHP = NO
+QCH_FILE =
+QHP_NAMESPACE = org.doxygen.Project
+QHP_VIRTUAL_FOLDER = doc
+QHP_CUST_FILTER_NAME =
+QHP_CUST_FILTER_ATTRS =
+QHP_SECT_FILTER_ATTRS =
+QHG_LOCATION =
+GENERATE_ECLIPSEHELP = NO
+ECLIPSE_DOC_ID = org.doxygen.Project
+DISABLE_INDEX = NO
+ENUM_VALUES_PER_LINE = 4
+GENERATE_TREEVIEW = ALL
+USE_INLINE_TREES = NO
+TREEVIEW_WIDTH = 250
+EXT_LINKS_IN_WINDOW = NO
+FORMULA_FONTSIZE = 10
+FORMULA_TRANSPARENT = YES
+SEARCHENGINE = NO
+SERVER_BASED_SEARCH = NO
+#---------------------------------------------------------------------------
+# configuration options related to the LaTeX output
+#---------------------------------------------------------------------------
+GENERATE_LATEX = NO
+LATEX_OUTPUT = latex
+LATEX_CMD_NAME = latex
+MAKEINDEX_CMD_NAME = makeindex
+COMPACT_LATEX = NO
+PAPER_TYPE = a4wide
+EXTRA_PACKAGES =
+LATEX_HEADER =
+PDF_HYPERLINKS = YES
+USE_PDFLATEX = YES
+LATEX_BATCHMODE = NO
+LATEX_HIDE_INDICES = NO
+LATEX_SOURCE_CODE = NO
+#---------------------------------------------------------------------------
+# configuration options related to the RTF output
+#---------------------------------------------------------------------------
+GENERATE_RTF = NO
+RTF_OUTPUT = rtf
+COMPACT_RTF = NO
+RTF_HYPERLINKS = NO
+RTF_STYLESHEET_FILE =
+RTF_EXTENSIONS_FILE =
+#---------------------------------------------------------------------------
+# configuration options related to the man page output
+#---------------------------------------------------------------------------
+GENERATE_MAN = NO
+MAN_OUTPUT = man
+MAN_EXTENSION = .3
+MAN_LINKS = NO
+#---------------------------------------------------------------------------
+# configuration options related to the XML output
+#---------------------------------------------------------------------------
+GENERATE_XML = NO
+XML_OUTPUT = xml
+XML_SCHEMA =
+XML_DTD =
+XML_PROGRAMLISTING = YES
+#---------------------------------------------------------------------------
+# configuration options for the AutoGen Definitions output
+#---------------------------------------------------------------------------
+GENERATE_AUTOGEN_DEF = NO
+#---------------------------------------------------------------------------
+# configuration options related to the Perl module output
+#---------------------------------------------------------------------------
+GENERATE_PERLMOD = NO
+PERLMOD_LATEX = NO
+PERLMOD_PRETTY = YES
+PERLMOD_MAKEVAR_PREFIX =
+#---------------------------------------------------------------------------
+# Configuration options related to the preprocessor
+#---------------------------------------------------------------------------
+ENABLE_PREPROCESSING = YES
+MACRO_EXPANSION = NO
+EXPAND_ONLY_PREDEF = NO
+SEARCH_INCLUDES = YES
+INCLUDE_PATH =
+INCLUDE_FILE_PATTERNS =
+PREDEFINED =
+EXPAND_AS_DEFINED =
+SKIP_FUNCTION_MACROS = YES
+#---------------------------------------------------------------------------
+# Configuration::additions related to external references
+#---------------------------------------------------------------------------
+TAGFILES =
+GENERATE_TAGFILE =
+ALLEXTERNALS = NO
+EXTERNAL_GROUPS = YES
+PERL_PATH = /usr/bin/perl
+#---------------------------------------------------------------------------
+# Configuration options related to the dot tool
+#---------------------------------------------------------------------------
+CLASS_DIAGRAMS = NO
+MSCGEN_PATH =
+HIDE_UNDOC_RELATIONS = YES
+HAVE_DOT = YES
+DOT_NUM_THREADS = 0
+DOT_FONTNAME = FreeSans
+DOT_FONTSIZE = 10
+DOT_FONTPATH =
+CLASS_GRAPH = YES
+COLLABORATION_GRAPH = YES
+GROUP_GRAPHS = YES
+UML_LOOK = NO
+TEMPLATE_RELATIONS = NO
+INCLUDE_GRAPH = YES
+INCLUDED_BY_GRAPH = YES
+CALL_GRAPH = NO
+CALLER_GRAPH = NO
+GRAPHICAL_HIERARCHY = YES
+DIRECTORY_GRAPH = YES
+DOT_IMAGE_FORMAT = png
+DOT_PATH =
+DOTFILE_DIRS =
+DOT_GRAPH_MAX_NODES = 50
+MAX_DOT_GRAPH_DEPTH = 1000
+DOT_TRANSPARENT = YES
+DOT_MULTI_TARGETS = NO
+GENERATE_LEGEND = YES
+DOT_CLEANUP = YES
Added: packages/teem/tags/1.11.0~svn4425-2/debian/Notes
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/Notes?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/Notes (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/Notes Sun May 8 05:07:29 2011
@@ -1,0 +1,8 @@
+help2man ./teem-miter -oteem-miter.1
+help2man ./teem-mrender -oteem-mrender.1
+help2man ./teem-nrrdSanity -oteem-nrrdSanity.1
+help2man ./teem-overrgb -oteem-overrgb.1
+help2man ./teem-tend -oteem-tend.1
+help2man ./teem-unu -oteem-unu.1
+help2man ./teem-vprobe -oteem-vprobe.1
+help2man ./teem-gprobe -oteem-gprobe.1
Added: packages/teem/tags/1.11.0~svn4425-2/debian/changelog
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/changelog?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/changelog (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/changelog Sun May 8 05:07:29 2011
@@ -1,0 +1,36 @@
+teem (1.11.0~svn4425-2) experimental; urgency=low
+
+ * move documentation build process to different target
+
+ -- Dominique Belhachemi <domibel at debian.org> Sun, 08 May 2011 00:18:53 -0400
+
+teem (1.11.0~svn4425-1) experimental; urgency=low
+
+ * New upstream snapshot
+ * Switch to dpkg-source 3.0 (quilt) format
+ * Remove static libraries
+ * Added debug package
+ * Removed DM-Upload-Allowed: yes
+ * Bump Standards-Version: 3.9.1
+ * Changed package name libteem1-dev -> libteem-dev
+ * Bump ABI version, libteem1 -> libteem2
+
+ -- Dominique Belhachemi <domibel at debian.org> Sun, 06 Mar 2011 17:21:11 -0500
+
+teem (1.10.0.dfsg1-2) unstable; urgency=low
+
+ [ Mathieu Malaterre ]
+ * Add DEB_BUILD_OPTIONS options
+
+ [ Dominique Belhachemi ]
+ * added README.source
+ * patch added to fix a bug that caused segfaults
+ * debian/control: changed package description
+
+ -- Dominique Belhachemi <domibel at cs.tu-berlin.de> Thu, 18 Dec 2008 15:49:57 -0500
+
+teem (1.10.0-1) unstable; urgency=low
+
+ * Initial release (Closes: #473044)
+
+ -- Dominique Belhachemi <domibel at cs.tu-berlin.de> Tue, 16 Dec 2008 14:11:30 -0500
Added: packages/teem/tags/1.11.0~svn4425-2/debian/compat
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/compat?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/compat (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/compat Sun May 8 05:07:29 2011
@@ -1,0 +1,1 @@
+7
Added: packages/teem/tags/1.11.0~svn4425-2/debian/control
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/control?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/control (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/control Sun May 8 05:07:29 2011
@@ -1,0 +1,147 @@
+Source: teem
+Priority: optional
+Maintainer: Debian Science Team <debian-science-maintainers at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Dominique Belhachemi <domibel at debian.org>
+Build-Depends: debhelper (>= 7), cmake, zlib1g-dev, libpng-dev,
+ libbz2-dev, cdbs, quilt
+Build-Depends-Indep: doxygen-latex
+Standards-Version: 3.9.1
+Vcs-Browser: http://svn.debian.org/wsvn/debian-science/packages/teem/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-science/packages/teem/trunk/
+Section: libs
+Homepage: http://teem.sourceforge.net/
+
+
+Package: libteem-dev
+Section: libdevel
+Provides: libteem1-dev
+Replaces: libteem1-dev
+Conflicts: libteem1-dev
+Suggests: teem-doc
+Architecture: any
+Depends: libteem2 (= ${binary:Version}), ${misc:Depends}
+Description: Tools to process and visualize scientific data and images - development
+ Teem is a coordinated group of libraries for representing, processing, and
+ visualizing scientific raster data. Teem includes command-line tools that
+ permit the library functions to be quickly applied to files and streams,
+ without having to write any code. The most important and useful libraries in
+ Teem are:
+ .
+ * Nrrd (and the unu command-line tool on top of it) supports a range of
+ operations for transforming N-dimensional raster data (resample, crop,
+ slice, project, histogram, etc.), as well as the NRRD file format for
+ storing arrays and their meta-information.
+ * Gage: fast convolution-based measurements at arbitrary point locations in
+ volume datasets (scalar, vector, tensor, etc.)
+ * Mite: a multi-threaded ray-casting volume render with transfer functions
+ based on any quantity Gage can measure
+ * Ten: for estimating, processing, and visualizing diffusion tensor fields,
+ including fiber tractography methods.
+ .
+ This package provides the Teem header files required to compile C++ programs
+ that use Teem to do 3D visualisation.
+
+
+Package: teem-apps
+Section: libdevel
+Architecture: any
+Depends: libteem2 (= ${binary:Version}), ${shlibs:Depends}, ${misc:Depends}
+Description: Tools to process and visualize scientific data and images - command line tools
+ Teem is a coordinated group of libraries for representing, processing, and
+ visualizing scientific raster data. Teem includes command-line tools that
+ permit the library functions to be quickly applied to files and streams,
+ without having to write any code. The most important and useful libraries in
+ Teem are:
+ .
+ * Nrrd (and the unu command-line tool on top of it) supports a range of
+ operations for transforming N-dimensional raster data (resample, crop,
+ slice, project, histogram, etc.), as well as the NRRD file format for
+ storing arrays and their meta-information.
+ * Gage: fast convolution-based measurements at arbitrary point locations in
+ volume datasets (scalar, vector, tensor, etc.)
+ * Mite: a multi-threaded ray-casting volume render with transfer functions
+ based on any quantity Gage can measure
+ * Ten: for estimating, processing, and visualizing diffusion tensor fields,
+ including fiber tractography methods.
+ .
+ This package contains some simple command-line tools which provide fast and
+ easy access to the functionality in the various libraries.
+
+
+Package: libteem2
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: Tools to process and visualize scientific data and images - runtime
+ Teem is a coordinated group of libraries for representing, processing, and
+ visualizing scientific raster data. Teem includes command-line tools that
+ permit the library functions to be quickly applied to files and streams,
+ without having to write any code. The most important and useful libraries in
+ Teem are:
+ .
+ * Nrrd (and the unu command-line tool on top of it) supports a range of
+ operations for transforming N-dimensional raster data (resample, crop,
+ slice, project, histogram, etc.), as well as the NRRD file format for
+ storing arrays and their meta-information.
+ * Gage: fast convolution-based measurements at arbitrary point locations in
+ volume datasets (scalar, vector, tensor, etc.)
+ * Mite: a multi-threaded ray-casting volume render with transfer functions
+ based on any quantity Gage can measure
+ * Ten: for estimating, processing, and visualizing diffusion tensor fields,
+ including fiber tractography methods.
+ .
+ This package provides the runtime files required to run programs
+ that use Teem to do 3D visualisation.
+
+
+Package: libteem2-dbg
+Architecture: any
+Section: debug
+Priority: extra
+Depends:
+ libteem2 (= ${binary:Version}),
+ ${misc:Depends}
+Description: debugging symbols for libteem2
+ Teem is a coordinated group of libraries for representing, processing, and
+ visualizing scientific raster data. Teem includes command-line tools that
+ permit the library functions to be quickly applied to files and streams,
+ without having to write any code. The most important and useful libraries in
+ Teem are:
+ .
+ * Nrrd (and the unu command-line tool on top of it) supports a range of
+ operations for transforming N-dimensional raster data (resample, crop,
+ slice, project, histogram, etc.), as well as the NRRD file format for
+ storing arrays and their meta-information.
+ * Gage: fast convolution-based measurements at arbitrary point locations in
+ volume datasets (scalar, vector, tensor, etc.)
+ * Mite: a multi-threaded ray-casting volume render with transfer functions
+ based on any quantity Gage can measure
+ * Ten: for estimating, processing, and visualizing diffusion tensor fields,
+ including fiber tractography methods.
+ .
+ This package contains the debugging symbols for libteem2.
+
+
+Package: teem-doc
+Section: doc
+Architecture: all
+Depends: ${misc:Depends}
+Description: Tools to process and visualize scientific data and images - documentation
+ Teem is a coordinated group of libraries for representing, processing, and
+ visualizing scientific raster data. Teem includes command-line tools that
+ permit the library functions to be quickly applied to files and streams,
+ without having to write any code. The most important and useful libraries in
+ Teem are:
+ .
+ * Nrrd (and the unu command-line tool on top of it) supports a range of
+ operations for transforming N-dimensional raster data (resample, crop,
+ slice, project, histogram, etc.), as well as the NRRD file format for
+ storing arrays and their meta-information.
+ * Gage: fast convolution-based measurements at arbitrary point locations in
+ volume datasets (scalar, vector, tensor, etc.)
+ * Mite: a multi-threaded ray-casting volume render with transfer functions
+ based on any quantity Gage can measure
+ * Ten: for estimating, processing, and visualizing diffusion tensor fields,
+ including fiber tractography methods.
+ .
+ This package provides the documentation files.
Added: packages/teem/tags/1.11.0~svn4425-2/debian/copyright
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/copyright?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/copyright (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/copyright Sun May 8 05:07:29 2011
@@ -1,0 +1,237 @@
+Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
+Debianized-By: Dominique Belhachemi <domibel at debian.org>
+Debianized-Date: Fri, 21 Mar 2008 09:41:47 +0000
+Original-Source: http://teem.sourceforge.net/
+
+
+Files: *
+Copyright:
+ Copyright (C) 2008, 2007, 2006, 2005 Gordon Kindlmann
+ Copyright (C) 2004, 2003, 2002, 2001, 2000, 1999, 1998 University of Utah
+License: Simple Library Usage License
+ ----------------------------------------------------------------------
+ Simple Library Usage License
+ Version 1, Nov 6 2005
+ .
+ Copyright (c) 2005 Gordon Kindlmann
+ .
+ Everyone is permitted to copy and distribute verbatim copies of this
+ license document, but changing it is not allowed.
+ .
+ SIMPLE LIBRARY USAGE LICENSE
+ TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
+ .
+ This library is free software; you can redistribute it and/or modify
+ it under the terms of the GNU Lesser General Public License (LGPL) as
+ published by the Free Software Foundation; either version 2.1 of the
+ License, or (at your option) any later version.
+ .
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ Lesser General Public License for more details.
+ .
+ You should have received a copy of the GNU Lesser General Public
+ License along with this library; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA
+ 02110-1301 USA
+ .
+ On Debian systems, the complete text of the GNU Lesser General
+ Public License can be found in `/usr/share/common-licenses/LGPL'.
+ .
+ .
+ .
+ EXCEPTION NOTICE
+ .
+ 1. As a special exception, the copyright holders of this library give
+ permission for additional uses of the text contained in this release
+ of the library as licensed under the Simple Library Usage License,
+ applying either version 1 of the License, or (at your option) any
+ later version of the License as published by the copyright holders of
+ version 1 of the License document.
+ .
+ 2. The exception is that you may combine or link a "work that uses the
+ Library" (as defined by the LGPL) with the Library to produce a work
+ containing portions of the Library in binary form, and distribute that
+ work under terms of your choice, provided that:
+ .
+ a) You give prominent notice with each copy of the work that the
+ Library is used in it.
+ .
+ b) If the work during execution displays copyright notices, you must
+ include the copyright notice for the Library among them.
+ .
+ 3. If you copy code from files distributed under the terms of the GNU
+ General Public License or the GNU Lesser General Public License into a
+ copy of this library, as this license permits, the exception does not
+ apply to the code that you add in this way. To avoid misleading
+ anyone as to the status of such modified files, you must delete this
+ exception notice from such code and/or adjust the licensing conditions
+ notice accordingly.
+ .
+ 4. If you write modifications of your own for this library, it is your
+ choice whether to permit this exception to apply to your
+ modifications. If you do not wish that, you must delete the exception
+ notice from such code and/or adjust the licensing conditions notice
+ accordingly.
+ ----------------------------------------------------------------------
+
+
+Files: UseTeemCMakeDemo/sanity.c
+Copyright:
+ Copyright (C) 2008 Gordon Kindlmann
+License: WTFPL Version 2, December 2004
+ DO WHAT THE FUCK YOU WANT TO PUBLIC LICENSE
+ Version 2, December 2004
+ .
+ Copyright (C) 2004 Sam Hocevar
+ 14 rue de Plaisance, 75014 Paris, France
+ Everyone is permitted to copy and distribute verbatim or modified
+ copies of this license document, and changing it is allowed as long
+ as the name is changed.
+ .
+ DO WHAT THE FUCK YOU WANT TO PUBLIC LICENSE
+ TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
+ .
+ 0. You just DO WHAT THE FUCK YOU WANT TO.
+-----------------------------------------------------------
+
+
+Files: src/nrrd/gzio.c
+Copyright:
+ Copyright (C) 2008, 2007, 2006, 2005 Gordon Kindlmann
+ Copyright (C) 2004, 2003, 2002, 2001, 2000, 1999, 1998 University of Utah
+ Copyright (C) 1995-2002 Jean-loup Gailly and Mark Adler
+License:
+ This library is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Lesser General Public License
+ (LGPL) as published by the Free Software Foundation; either
+ version 2.1 of the License, or (at your option) any later version.
+ The terms of redistributing and/or modifying this software also
+ include exceptions to the LGPL that facilitate static linking.
+ .
+ This library is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ Lesser General Public License for more details.
+ .
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to Free Software Foundation, Inc.,
+ 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
+ ---
+ This file is a modified version of the 'gzio.c' and 'zutil.h' source
+ files from the zlib 1.1.4 distribution.
+ .
+ zlib.h -- interface of the 'zlib' general purpose compression library
+ version 1.1.4, March 11th, 2002
+ .
+ Copyright (C) 1995-2002 Jean-loup Gailly and Mark Adler
+ .
+ This software is provided 'as-is', without any express or implied
+ warranty. In no event will the authors be held liable for any damages
+ arising from the use of this software.
+ .
+ Permission is granted to anyone to use this software for any purpose,
+ including commercial applications, and to alter it and redistribute it
+ freely, subject to the following restrictions:
+ .
+ 1. The origin of this software must not be misrepresented; you must not
+ claim that you wrote the original software. If you use this software
+ in a product, an acknowledgment in the product documentation would be
+ appreciated but is not required.
+ 2. Altered source versions must be plainly marked as such, and must not be
+ misrepresented as being the original software.
+ 3. This notice may not be removed or altered from any source distribution.
+ .
+ Jean-loup Gailly Mark Adler
+ jloup at gzip.org madler at alumni.caltech.edu
+ .
+ The data format used by the zlib library is described by RFCs (Request for
+ Comments) 1950 to 1952 in the files ftp://ds.internic.net/rfc/rfc1950.txt
+ (zlib format), rfc1951.txt (deflate format) and rfc1952.txt (gzip format).
+ ----------------------------------
+
+
+Files: src/air/randMT.c
+Copyright:
+ Copyright (C) 2008, 2007, 2006, 2005 Gordon Kindlmann
+ Copyright (C) 2004, 2003, 2002, 2001, 2000, 1999, 1998 University of Utah
+ Copyright (C) 1997 - 2002, Makoto Matsumoto and Takuji Nishimura,
+ Copyright (C) 2000 - 2003, Richard J. Wagner
+License:
+ This library is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Lesser General Public License
+ (LGPL) as published by the Free Software Foundation; either
+ version 2.1 of the License, or (at your option) any later version.
+ The terms of redistributing and/or modifying this software also
+ include exceptions to the LGPL that facilitate static linking.
+ .
+ This library is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ Lesser General Public License for more details.
+ .
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to Free Software Foundation, Inc.,
+ 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
+ ---
+ This file is a modified version of the MersenneTwister.h source file
+ written by Richard J. Wagner. The original copyright notice follows.
+ .
+ Mersenne Twister random number generator -- a C++ class MTRand
+ Based on code by Makoto Matsumoto, Takuji Nishimura, and Shawn Cokus
+ Richard J. Wagner v1.0 15 May 2003 rjwagner at writeme.com
+ .
+ The Mersenne Twister is an algorithm for generating random numbers. It
+ was designed with consideration of the flaws in various other generators.
+ The period, 2^19937-1, and the order of equidistribution, 623 dimensions,
+ are far greater. The generator is also fast; it avoids multiplication and
+ division, and it benefits from caches and pipelines. For more information
+ see the inventors' web page at http://www.math.keio.ac.jp/~matumoto/emt.html
+ .
+ Reference
+ M. Matsumoto and T. Nishimura, "Mersenne Twister: A 623-Dimensionally
+ Equidistributed Uniform Pseudo-Random Number Generator", ACM Transactions on
+ Modeling and Computer Simulation, Vol. 8, No. 1, January 1998, pp 3-30.
+ .
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions
+ are met:
+ .
+ 1. Redistributions of source code must retain the above copyright
+ notice, this list of conditions and the following disclaimer.
+ .
+ 2. Redistributions in binary form must reproduce the above copyright
+ notice, this list of conditions and the following disclaimer in the
+ documentation and/or other materials provided with the distribution.
+ .
+ 3. The names of its contributors may not be used to endorse or promote
+ products derived from this software without specific prior written
+ permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+ "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+ LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
+ FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
+ COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
+ INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
+ BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+ LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN
+ ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ POSSIBILITY OF SUCH DAMAGE.
+ .
+ The original code included the following notice:
+ .
+ When you use this, send an email to: matumoto at math.keio.ac.jp
+ with an appropriate reference to your work.
+ .
+ It would be nice to CC: rjwagner at writeme.com and Cokus at math.washington.edu
+ when you write.
+ ----------------------------------
+
+Files: debian/*
+Copyright: Copyright 2008, Dominique Belhachemi <domibel at debian.org>
+License: GPL-2+
+ The Debian packaging is licensed under the GPL, see `/usr/share/common-licenses/GPL'
Added: packages/teem/tags/1.11.0~svn4425-2/debian/docs
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/docs?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/docs (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/docs Sun May 8 05:07:29 2011
@@ -1,0 +1,1 @@
+README.txt
Added: packages/teem/tags/1.11.0~svn4425-2/debian/get-orig-source
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/get-orig-source?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/get-orig-source (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/get-orig-source Sun May 8 05:07:29 2011
@@ -1,0 +1,46 @@
+#!/bin/sh
+set -ex
+
+PACKAGE=teem
+
+VERSION=${VERSION:-$2}
+TARFILE=${TARFILE:-$3}
+
+if [ -z ${VERSION}]; then
+VERSION=`dpkg-parsechangelog | sed -n -e 's/^Version: \(.*\)-[^-]*$/\1/p'`
+fi
+
+REVISION=`echo $VERSION | sed -e 's/^.*svn//g'`
+#REVISION=10509
+FOLDER=${PACKAGE}-${VERSION}
+
+if [ -z ${TARFILE}]; then
+TARFILE=${PACKAGE}_${VERSION}.orig.tar.gz
+fi
+
+#svn export --quiet --revision ${REVISION} https://teem.svn.sourceforge.net/svnroot/teem/teem/trunk ${FOLDER}
+svn export --quiet --revision ${REVISION} https://teem.svn.sourceforge.net/svnroot/teem/teem/branches/Teem-1.11 ${FOLDER}
+
+GZIP=-9 tar czf ${TARFILE} ${FOLDER}
+rm -rf ${FOLDER}
+
+exit
+
+
+#find teem/ -depth -type d -name ".svn" | xargs rm -rf
+#find teem/ -depth -name "GNUmakefile" | xargs rm -rf
+rm -rf teem/arch/
+rm -rf teem/src/make/
+mv teem teem-$VERSION~svn$REVISION
+tar cvzf teem_$VERSION~svn$REVISION.orig.tar.gz teem-$VERSION~svn$REVISION
+rm -rf teem-$VERSION~svn$REVISION
+exit
+
+VERSIONDFSG=1.11.0.dfsg1
+wget http://downloads.sourceforge.net/teem/teem-$VERSION-src.tar.gz
+tar xvzf teem-$VERSION-src.tar.gz
+rm teem-$VERSION-src.tar.gz
+mv teem-$VERSION-src teem-$VERSIONDFSG
+rm -rf teem-$VERSIONDFSG/arch
+GZIP=-9 tar cvzf teem_$VERSIONDFSG.orig.tar.gz teem-$VERSIONDFSG
+rm -rf teem-$VERSIONDFSG
Added: packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-gprobe.1
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/man/teem-gprobe.1?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-gprobe.1 (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-gprobe.1 Sun May 8 05:07:29 2011
@@ -1,0 +1,135 @@
+.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.38.2.
+.TH TEEM "1" "May 2011" "Teem version 1.11.0 (late 2009 or early 2010)" "User Commands"
+.SH NAME
+Teem\-gprobe \- Shows off the functionality of the gage library
+.SH SYNOPSIS
+.B teem-gprobe
+\fI-i <nin> -k <kind> \fR[\fI-v <verbosity>\fR] \fI-q <query> \\fR
+.SH DESCRIPTION
+\&./teem\-gprobe: Shows off the functionality of the gage library. Uses
+gageProbe() to query various kinds of volumes to learn various measured or
+derived quantities.
+.IP
+[\-gmc <min gradmag>] [\-ofs] [\-seed <N>] [\-k00 <kern00>] [\-k11 <kern11>] \e
+[\-k22 <kern22>] [\-rn] [\-ssn <SS #>] [\-ssr <scale range>] \e
+[\-kssb <kernel>] [\-kssr <kernel>] [\-ssu] [\-sso] [\-ssnd] [\-ssf <SS \e
+read/save format>] [\-s <sclX sclY sxlZ>] [\-ssp <pos>] [\-pg <nrrd>] \e
+[\-pi <nrrd>] [\-pp <pos ...>] [\-eps <epsilon>] [\-psi <p>] [\-t <type>] \e
+[\-o <nout>]
+.IP
+\fB\-i\fR <nin> = input volume
+.IP
+\fB\-k\fR <kind> = "kind" of volume ("scalar", "vector", "tensor",
+.IP
+or "dwi")
+.IP
+\fB\-v\fR <verbosity> = verbosity level (int); default: "1"
+.IP
+\fB\-q\fR <query> = the quantity (scalar, vector, or matrix) to learn
+.IP
+by probing (string)
+.TP
+\fB\-gmc\fR <min gradmag> = For curvature\-based queries, use zero when
+gradient magnitude is below this (double);
+default: "0.0"
+.IP
+\fB\-ofs\fR = If only per\-axis spacing is available, use that
+.IP
+to contrive full orientation info
+.IP
+\fB\-seed\fR <N> = RNG seed; mostly for debugging (unsigned int);
+.IP
+default: "42"
+.IP
+\fB\-k00\fR <kern00> = kernel for gageKernel00; default: "tent"
+\fB\-k11\fR <kern11> = kernel for gageKernel11; default: "cubicd:1,0"
+\fB\-k22\fR <kern22> = kernel for gageKernel22; default: "cubicdd:1,0"
+.IP
+\fB\-rn\fR = renormalize kernel weights at each new sample
+.IP
+location. "Accurate" kernels don't need this;
+doing it always makes things go slower
+.IP
+\fB\-ssn\fR <SS #> = how many scale\-space samples to evaluate, or, 0
+.IP
+to turn\-off all scale\-space behavior (unsigned
+int); default: "0"
+.TP
+\fB\-ssr\fR <scale range> = range of scales in scale\-space (2 doubles);
+default: "nan nan"
+.IP
+\fB\-kssb\fR <kernel> = blurring kernel, to sample scale space;
+.IP
+default: "dgauss:1,5"
+.IP
+\fB\-kssr\fR <kernel> = kernel for reconstructing from scale space
+.IP
+samples; default: "hermite"
+.IP
+\fB\-ssu\fR = do uniform samples along sigma, and not (by
+.IP
+default) samples according to the effective
+diffusion scale
+.IP
+\fB\-sso\fR = if not using "\-ssu", use pre\-computed optimal
+.IP
+sigmas when possible
+.IP
+\fB\-ssnd\fR = normalize derivatives by scale
+.PP
+\fB\-ssf\fR <SS read/save format> = printf\-style format (including a "%u") for the
+.IP
+filenames from which to read pre\-blurred volumes
+computed for the stack, if they exist and match
+the stack parameters, and where to save them if
+they had to be re\-computed. Leave this as empty
+string to disable this. (string); default: ""
+.TP
+\fB\-s\fR <sclX sclY sxlZ> = scaling factor for resampling on each axis (>1.0
+: supersampling); use "\-ssp" (and "\-psi")to
+specify scale position of sampling (3 doubles);
+default: "1 1 1"
+.IP
+\fB\-ssp\fR <pos> = when using scale\-space, scale\-position at which
+.IP
+to probe (double); default: "0"
+.IP
+\fB\-pg\fR <nrrd> = overrides "\-s": 2\-D nrrd which specifies origin
+.IP
+and direction vectors for sampling grid;
+default: ""
+.IP
+\fB\-pi\fR <nrrd> = overrides "\-pv": probes at this list of 3\-vec or
+.IP
+4\-vec positions; default: ""
+.IP
+\fB\-pp\fR <pos ...> = overrides "\-pi": only sample at this specified
+.IP
+point (3..4 doubles); default: "nan nan nan"
+.IP
+\fB\-eps\fR <epsilon> = if non\-zero, and if query is a scalar, and if
+.IP
+using "pp" to query at a single point, then do
+epsilon offset probes to calculate discrete
+differences, to find the numerical gradient and
+hessian (for debugging) (double); default: "0"
+.IP
+\fB\-psi\fR <p> = whether the probe location specification (by any
+.IP
+of the four previous flags) are in index space
+(bool); default: "true"
+.IP
+\fB\-t\fR <type> = type of output volume (type); default: "float"
+\fB\-o\fR <nout> = output volume (string); default: "\-"
+.SH "SEE ALSO"
+The full documentation for
+.B Teem
+is maintained as a Texinfo manual. If the
+.B info
+and
+.B Teem
+programs are properly installed at your site, the command
+.IP
+.B info Teem
+.PP
+should give you access to the complete manual.
Added: packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-miter.1
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/man/teem-miter.1?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-miter.1 (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-miter.1 Sun May 8 05:07:29 2011
@@ -1,0 +1,142 @@
+.TH "teem-miter" "1" "December 10, 2008" "1.10.0" "User Commands"
+.SH "NAME"
+teem\-miter \- A simple but effective little volume renderer
+.SH "SYNOPSIS"
+.B teem\-miter
+[\fI at file \fR...] [\fI\-i <nsin>\fR] [\fI\-vi <nvin>\fR] [\fI\-ti <ntin>\fR] \fI\\fR
+.HP
+\fB\-txf\fR <nin ...> \fB\-fr\fR <eye pos> [\-at <at pos>] [\-up <up dir>] [\-rh] [\-or] \e
+.HP
+\fB\-dn\fR <near> \fB\-di\fR <image> \fB\-df\fR <far> [\-ar] [\-ur <uMin uMax>] [\-vr <vMin \e
+.IP
+vMax>] [\-fv <field of view>] [\-offfr] [\-ffr <fake from>] \e
+[\-turn <angle>] [\-am <ambient>] [\-ld <light pos>] [\-is <image size>] \e
+[\-iss <scale>] [\-ads <ka kd ks>] [\-sp <spec pow>] [\-k00 <kernel>] \e
+[\-k11 <kernel>] [\-k22 <kernel>] [\-ss <shading spec>] [\-ns <normal \e
+spec>] [\-side <normal side>] [\-rn] [\-gmc <min gradmag>] [\-step <size>] \e
+[\-ref <size>] [\-vp <verbose pixel>] [\-n1 <near1>] [\-nt <# threads>] \e
+\fB\-o\fR <filename>
+.IP
+ at file ... = response file(s) containing command\-line arguments
+\fB\-i\fR <nsin> = input scalar volume to render (nrrd); default: ""
+.HP
+\fB\-vi\fR <nvin> = input vector volume to render (nrrd); default: ""
+.HP
+\fB\-ti\fR <ntin> = input tensor volume to render (nrrd); default: ""
+.HP
+\fB\-txf\fR <nin ...> = one or more transfer functions (1 or more nrrds)
+.HP
+\fB\-fr\fR <eye pos> = camera eye point (3 doubles)
+.HP
+\fB\-at\fR <at pos> = camera look\-at point (3 doubles); default: "0 0 0"
+.HP
+\fB\-up\fR <up dir> = camera pseudo\-up vector (3 doubles); default: "0 0 1"
+.IP
+\fB\-rh\fR = use a right\-handed UVN frame (V points down)
+\fB\-or\fR = orthogonal (not perspective) projection
+.HP
+\fB\-dn\fR <near> = distance to near clipping plane (double)
+.HP
+\fB\-di\fR <image> = distance to image plane (double)
+.HP
+\fB\-df\fR <far> = distance to far clipping plane (double)
+.IP
+\fB\-ar\fR = near, image, and far plane distances are relative to the
+.IP
+*at* point, instead of the eye point
+.HP
+\fB\-ur\fR <uMin uMax> = range in U direction of image plane (2 doubles)
+.HP
+\fB\-vr\fR <vMin vMax> = range in V direction of image plane (2 doubles)
+.PP
+\fB\-fv\fR <field of view> = angle (in degrees) vertically subtended by view window
+.IP
+(double); default: "20"
+.IP
+\fB\-offfr\fR = the given eye point ("\-fr") is to be interpreted as an
+.IP
+offset from the at point.
+.TP
+\fB\-ffr\fR <fake from> = eye point to use for view\-dependent transfer functions.
+By default (not using this option), the point used is the
+normally specified camera eye point. (3 doubles)
+.TP
+\fB\-turn\fR <angle> = angle (degrees) by which to rotate the from point around
+true up, for making stereo pairs. Positive means move
+towards positive U (the right) (double); default: "0.0"
+.HP
+\fB\-am\fR <ambient> = ambient light color (3 floats); default: "1 1 1"
+.TP
+\fB\-ld\fR <light pos> = view space light position (extended to infinity)
+(3 floats); default: "0 0 \fB\-1\fR"
+.HP
+\fB\-is\fR <image size> = image dimensions (2 ints); default: "256 256"
+.TP
+\fB\-iss\fR <scale> = scaling of image size (from "is") (float);
+default: "1.0"
+.HP
+\fB\-ads\fR <ka kd ks> = phong components (3 floats); default: "0.1 0.6 0.3"
+.HP
+\fB\-sp\fR <spec pow> = phong specular power (double); default: "30"
+.TP
+\fB\-k00\fR <kernel> = value reconstruction kernel (kernel specification);
+default: "tent"
+.TP
+\fB\-k11\fR <kernel> = first derivative kernel (kernel specification);
+default: "cubicd:1,0"
+.TP
+\fB\-k22\fR <kernel> = second derivative kernel (kernel specification);
+default: "cubicdd:1,0"
+.TP
+\fB\-ss\fR <shading spec> = how to do shading (string);
+default: "phong:gage(scalar:n)"
+.TP
+\fB\-ns\fR <normal spec> = "normal" to use for those miteVal's that need one
+(string); default: ""
+.SS "\-side <normal side> = how to interpret gradients as normals:"
+.IP
+o "1": normal points to lower values (higher == more
+"inside")
+o "0": "two\-sided": dot\-products are abs()'d
+o "\-1": normal points to higher values (lower == more
+"inside")
+(int)
+default: "1"
+.IP
+\fB\-rn\fR = renormalize kernel weights at each new sample location.
+.IP
+"Accurate" kernels don't need this; doing it always makes
+things go slower
+.TP
+\fB\-gmc\fR <min gradmag> = For curvature\-based transfer functions, set curvature to
+zero when gradient magnitude is below this (double);
+default: "0.0"
+.TP
+\fB\-step\fR <size> = step size along ray in world space (double);
+default: "0.01"
+.TP
+\fB\-ref\fR <size> = "reference" step size (world space) for doing opacity
+correction in compositing (double); default: "0.01"
+.PP
+\fB\-vp\fR <verbose pixel> = pixel for which to turn on verbose messages (2 ints);
+.IP
+default: "\-1 \fB\-1\fR"
+.TP
+\fB\-n1\fR <near1> = opacity close enough to 1.0 to terminate ray (double);
+default: "0.99"
+.HP
+\fB\-nt\fR <# threads> = number of threads hoover should use (int); default: "1"
+.HP
+\fB\-o\fR <filename> = file to write output nrrd to (string)
+.SH "SEE ALSO"
+The full documentation for
+.B teem\-miter
+is maintained as a Texinfo manual. If the
+.B info
+and
+.B teem\-miter
+programs are properly installed at your site, the command
+.IP
+.B info teem\-miter
+.PP
+should give you access to the complete manual.
Added: packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-mrender.1
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/man/teem-mrender.1?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-mrender.1 (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-mrender.1 Sun May 8 05:07:29 2011
@@ -1,0 +1,128 @@
+.TH "teem\-mrender" "1" "December 10, 2008" "1.10.0" "User Commands"
+.SH "NAME"
+teem\-mrender \- A demonstration of hoover, gage, and nrrd measures.
+.SH "SYNOPSIS"
+.B teem\-mrender
+[\fI at file \fR...] \fI\-i <nin> \-k <kind> \-fr <eye pos> \fR[\fI\-at <at
+pos>] [\-up <up dir>] [\-rh] [\-or] \fB\-dn\fR <near> \fB\-di\fR <image> \fB\-df\fR <far> [\-ar] \e
+[\-ur <uMin uMax>] [\-vr <vMin vMax>] [\-fv <field of view>] [\-offfr] \e
+[\-turn <angle>] [\-is <image size>] [\-k00 <kernel>] [\-k11 <kernel>] \e
+[\-k22 <kernel>] [\-rn] \fB\-q\fR <query> \fB\-m\fR <measure> [\-gmc <min gradmag>] \e
+[\-fn <from nan>] [\-step <size>] [\-nt <# threads>] [\-vp <img coords>] \e
+[\-o <filename>]
+.IP
+ at file ... = response file(s) containing command\-line arguments
+.IP
+\fB\-i\fR <nin> = input nrrd to render (nrrd)
+.TP
+\fB\-k\fR <kind> = "kind" of volume ("scalar", "vector", or "tensor")
+(kind)
+.HP
+\fB\-fr\fR <eye pos> = camera eye point (3 doubles)
+.HP
+\fB\-at\fR <at pos> = camera look\-at point (3 doubles); default: "0 0 0"
+.HP
+\fB\-up\fR <up dir> = camera pseudo\-up vector (3 doubles); default: "0 0 1"
+.IP
+\fB\-rh\fR = use a right\-handed UVN frame (V points down)
+\fB\-or\fR = orthogonal (not perspective) projection
+.HP
+\fB\-dn\fR <near> = distance to near clipping plane (double)
+.HP
+\fB\-di\fR <image> = distance to image plane (double)
+.HP
+\fB\-df\fR <far> = distance to far clipping plane (double)
+.IP
+\fB\-ar\fR = near, image, and far plane distances are relative to the
+.IP
+*at* point, instead of the eye point
+.TP
+\fB\-ur\fR <uMin uMax> = range in U direction of image plane (2 doubles);
+default: "nan nan"
+.TP
+\fB\-vr\fR <vMin vMax> = range in V direction of image plane (2 doubles);
+default: "nan nan"
+.PP
+\fB\-fv\fR <field of view> = angle (in degrees) vertically subtended by view window
+.IP
+(double); default: "20"
+.IP
+\fB\-offfr\fR = the given eye point ("\-fr") is to be interpreted as an
+.IP
+offset from the at point.
+.TP
+\fB\-turn\fR <angle> = angle (degrees) by which to rotate the from point around
+true up, for making stereo pairs. Positive means move
+towards positive U (the right) (double); default: "0.0"
+.HP
+\fB\-is\fR <image size> = image dimensions (2 ints); default: "256 256"
+.TP
+\fB\-k00\fR <kernel> = value reconstruction kernel (kernel specification);
+default: "tent"
+.TP
+\fB\-k11\fR <kernel> = first derivative kernel (kernel specification);
+default: "cubicd:1,0"
+.TP
+\fB\-k22\fR <kernel> = second derivative kernel (kernel specification);
+default: "cubicdd:1,0"
+.IP
+\fB\-rn\fR = renormalize kernel weights at each new sample location.
+.IP
+"Accurate" kernels don't need this; doing it always makes
+things go slower
+.TP
+\fB\-q\fR <query> = the quantity (scalar, vector, or matrix) to learn by
+probing (string)
+.TP
+\fB\-m\fR <measure> = how to collapse list of ray samples into one scalar.
+Possibilities include:
+o "min", "max", "mean", "median", "mode", "variance",
+"skew"
+(self\-explanatory)
+o "intc", "slope", "error": intercept, slope, and
+error from line fitting
+o "sd": standard deviation
+o "product", "sum": product or sum of all values
+o "L1", "L2", "Linf": different norms
+o "histo\-min", "histo\-max", "histo\-mean",
+"histo\-median", "histo\-mode", "histo\-product",
+"histo\-l2", "histo\-sum", "histo\-variance", "histo\-sd":
+same measures, but for situations where we're given not
+the original values, but a histogram of them.
+(measure)
+.TP
+\fB\-gmc\fR <min gradmag> = For curvature\-related queries, set answer to zero when
+gradient magnitude is below this (double); default: "0.0"
+.TP
+\fB\-fn\fR <from nan> = When histo\-based measures generate NaN answers, the
+value that should be substituted for NaN. (double);
+default: "nan"
+.TP
+\fB\-step\fR <size> = step size along ray in world space (double);
+default: "0.01"
+.HP
+\fB\-nt\fR <# threads> = number of threads hoover should use (int); default: "1"
+.TP
+\fB\-vp\fR <img coords> = pixel coordinates for which to turn on all verbose
+debugging messages, or "\-1 \fB\-1\fR" to disable this. (2 ints);
+default: "\-1 \fB\-1\fR"
+.TP
+\fB\-o\fR <filename> = file to write output nrrd to. Defaults to stdout ("\-").
+(string); default: "\-"
+.SH "DESCRIPTION"
+Uses hoover to cast rays through a volume (scalar, vector, or tensor), gage to
+measure one of various quantities along the rays, and a specified nrrd measure
+to reduce all the values along a ray down to one scalar, which is saved in the
+output (double) image.
+.SH "SEE ALSO"
+The full documentation for
+.B teem\-mrender
+is maintained as a Texinfo manual. If the
+.B info
+and
+.B teem\-mrender
+programs are properly installed at your site, the command
+.IP
+.B info teem\-mrender
+.PP
+should give you access to the complete manual.
Added: packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-nrrdSanity.1
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/man/teem-nrrdSanity.1?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-nrrdSanity.1 (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-nrrdSanity.1 Sun May 8 05:07:29 2011
@@ -1,0 +1,29 @@
+.TH "teem-nrrdSanity" "1" "December 10, 2008" "1.10.0" "User Commands"
+.SH "NAME"
+teem\-nrrdSanity \- Nearly Raw Raster Data Sanity Check
+.SH "DESCRIPTION"
+.IP
+Usage: teem\-nrrdSanity
+.IP
+nrrdSanity calls the nrrdSanity() check to verify the correctness of all
+.IP
+the information (set at compile\-time) about the architecture, such as
+endianness, 32/64\-bit, and the size of various types, as well as running
+sanity checks on the global default (nrrdDefault*) and state (nrrdState*)
+variables.
+.IP
+As a convenience, nrrdSanity also list the availability of the different
+.IP
+formats and data encodings (for Nrrd files) supported by this build.
+.SH "SEE ALSO"
+The full documentation for
+.B teem\-nrrdSanity
+is maintained as a Texinfo manual. If the
+.B info
+and
+.B teem\-nrrdSanity
+programs are properly installed at your site, the command
+.IP
+.B info teem\-nrrdSanity
+.PP
+should give you access to the complete manual.
Added: packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-overrgb.1
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/man/teem-overrgb.1?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-overrgb.1 (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-overrgb.1 Sun May 8 05:07:29 2011
@@ -1,0 +1,50 @@
+.TH TEEM "1" "December 10, 2008" "1.10.0" "User Commands"
+.SH NAME
+teem\-overrgb \- Composites an RGBA nrrd over a background color.
+.SH SYNOPSIS
+.B teem-overrgb
+\fI-i <nin> \fR[\fI-c <contrast>\fR] [\fI-cfp <fixed point>\fR] \fI\\fR
+.SH DESCRIPTION
+\&./teem\-overrgb: Composites an RGBA nrrd over a background color (or image),
+after doing gamma correction, then quantizes to an 8\-bit image. Actually, the
+input nrrd can have more than 4 values per pixel, but only the first four are
+used. If the RGBA nrrd is floating point, the values are taken at face value;
+if it is fixed point, the values interpreted as having been quantized (so that
+8\-bit RGBA images will act as you expect). When compositing with a background
+image, the given background image does not have to be the same size as the
+input image; it will be resampled (with linear interpolation) to fit.
+.IP
+[\-g <gamma>] [\-b <background>] [\-bi <nbg>] \fB\-o\fR <filename>
+.HP
+\fB\-i\fR <nin> = input nrrd to composite (nrrd)
+.TP
+\fB\-c\fR <contrast> = contrast to apply to RGB values, before gamma. "0.0"
+means no change, "1.0" means thresholding, "\-1.0" means a
+complete washout. (double); default: "0.0"
+.PP
+\fB\-cfp\fR <fixed point> = component level that doesn't change with contrast
+.IP
+(double); default: "0.5"
+.TP
+\fB\-g\fR <gamma> = gamma to apply to image data, after contrast (double);
+default: "1.0"
+.TP
+\fB\-b\fR <background> = background color to composite against; white is 1 1 1,
+not 255 255 255. (3 doubles); default: "0 0 0"
+.TP
+\fB\-bi\fR <nbg> = 8\-bit RGB background image to composite against (nrrd);
+default: ""
+.HP
+\fB\-o\fR <filename> = file to write output PPM image to (string)
+.SH "SEE ALSO"
+The full documentation for
+.B teem-overrgb
+is maintained as a Texinfo manual. If the
+.B info
+and
+.B teem-overrgb
+programs are properly installed at your site, the command
+.IP
+.B info teem-overrgb
+.PP
+should give you access to the complete manual.
Added: packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-tend.1
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/man/teem-tend.1?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-tend.1 (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-tend.1 Sun May 8 05:07:29 2011
@@ -1,0 +1,47 @@
+.TH "teem-tend" "1" "December 10, 2008" "1.10.0" "User Commands"
+.SH "NAME"
+teem\-tend \- Diffusion Image Processing and Analysis
+.SH "DESCRIPTION"
+.IP
+"tend" is a command\-line interface to much of the functionality in "ten",
+.IP
+a C library for diffusion image processing. Ten is one library in the "Teem"
+collection of libraries. More information about Teem is at
+<http://teem.sourceforge.net>.
+.IP
+Users are strongly encouraged to join the teem\-users mailing list:
+.IP
+<http://lists.sourceforge.net/lists/listinfo/teem\-users>. This is the primary
+forum for feedback, questions, and feature requests.
+.IP
+Like "unu", another Teem command\-line binary, it is often useful to chain
+.IP
+together invocations of tend with pipes, as in the following, which estimates
+tensors from DWIs, takes a slice of the tensor volume, computes the standard
+RGB colormap of the principal eigenvector, and then quantizes it to an 8\-bit
+PNG:
+.IP
+tend estim \fB\-i\fR dwi.nhdr \fB\-B\fR kvp \fB\-knownB0\fR true \e
+.IP
+| tend slice \fB\-a\fR 2 \fB\-p\fR 30 \e
+| tend evecrgb \fB\-c\fR 0 \fB\-a\fR cl2 \fB\-gam\fR 1.2 \e
+| unu quantize \fB\-b\fR 8 \fB\-min\fR 0 \fB\-max\fR 1 \fB\-o\fR z30\-rgb.png
+.IP
+If tend repeatedly proves itself useful for your research, an
+.IP
+acknowledgment to that effect in your publication would be greatly
+appreciated, such as (for LaTeX): "Dataset processing performed with the {\ett
+tend} tool part of the {\ett Teem} toolkit available at
+{\ett $<$http://teem.sf.net$>$}"
+.SH "SEE ALSO"
+The full documentation for
+.B Teem
+is maintained as a Texinfo manual. If the
+.B info
+and
+.B teem\-tend
+programs are properly installed at your site, the command
+.IP
+.B info teem\-tend
+.PP
+should give you access to the complete manual.
Added: packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-unu.1
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/man/teem-unu.1?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-unu.1 (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-unu.1 Sun May 8 05:07:29 2011
@@ -1,0 +1,65 @@
+.TH "teem-unu" "1" "December 10, 2008" "1.10.0" "User Commands"
+.SH "NAME"
+teem\-unu \- Utah Nrrd Utilities command\-line interface
+.SH "DESCRIPTION"
+.HP
+"teem\-unu" is a command\-line interface to much of the functionality in "nrrd",
+.IP
+a C library for raster data processing. Nrrd is one library in the "Teem"
+collection of libraries. More information about Teem is at
+<http://teem.sf.net>.
+.IP
+Users are strongly encouraged to join the teem\-users mailing list:
+.IP
+<http://lists.sourceforge.net/lists/listinfo/teem\-users>. This is the primary
+forum for feedback, questions, and feature requests.
+.IP
+The utility of unu is mainly as a pre\-processing tool for getting data
+.IP
+into a type, encoding, format, or dimensions best suited for some
+visualization or rendering task. Also, slices and projections are effective
+ways to visually inspect the contents of a dataset. Especially useful
+commands include make, resample, crop, slice, project, histo, dhisto,
+quantize, and save. Full documentation for each command is shown by typing
+the command alone, e.g., "unu make". Unu can process CT and MRI volume
+datasets, grayscale and color images, time\-varying volumes of vector fields
+(5\-D arrays), and more. Currently supported formats are plain text files (2\-D
+float arrays), NRRD, VTK structured points, and PNG and PNM images. "unu make
+\fB\-bs\fR \fB\-1\fR" can read from DICOM files. "unu save" can generate EPS files.
+Supported encodings are raw, ascii, hex, gzip, and bzip2.
+.IP
+Much of the functionality of unu derives from chaining multiple
+.IP
+invocations together with pipes ("|"), minimizing the need to save out
+intermediate files. For example, if "data.raw.gz" is a gzip'ed 256 x 256 x 80
+volume of raw floats written from a PC, then the following will save to
+"zsum.png" a histogram equalized summation projection along the slowest
+axis:
+.IP
+unu make \fB\-i\fR data.raw.gz \fB\-t\fR float \fB\-s\fR 256 256 80 \fB\-e\fR gzip \fB\-en\fR little \e
+.IP
+| unu project \fB\-a\fR 2 \fB\-m\fR sum \e
+| unu heq \fB\-b\fR 2000 \fB\-s\fR 1 \e
+| unu quantize \fB\-b\fR 8 \fB\-o\fR zsum.png
+.IP
+If unu or nrrd repeatedly proves itself useful for your research, an
+.IP
+acknowledgment to that effect in your publication would be greatly
+appreciated, such as (for LaTeX): "Dataset processing performed with the {\ett
+unu} tool (or the {\ett nrrd} library), part of the {\ett Teem} toolkit
+available at {\ett $<$http://teem.sf.net$>$}"
+.IP
+Formats available: nrrd pnm png vtk text eps
+Nrrd data encodings available: raw ascii hex gz bz2
+.SH "SEE ALSO"
+The full documentation for
+.B teem\-unu
+is maintained as a Texinfo manual. If the
+.B info
+and
+.B teem\-unu
+programs are properly installed at your site, the command
+.IP
+.B info teem\-unu
+.PP
+should give you access to the complete manual.
Added: packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-vprobe.1
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/man/teem-vprobe.1?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-vprobe.1 (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/man/teem-vprobe.1 Sun May 8 05:07:29 2011
@@ -1,0 +1,92 @@
+.TH "teem-vprobe" "1" "December 10, 2008" "1.10.0" "User Commands"
+.SH "NAME"
+teem\-vprobe \- Shows off the functionality of the gage library.
+.SH "SYNOPSIS"
+.B teem\-vprobe
+\fI\-i <nin> \-k <kind> \fR[\fI\-v <verbosity>\fR] \fI\-q <query> \fR[\fI\-s <sclX \\fR
+.SH "DESCRIPTION"
+Uses gageProbe() to query various kinds of volumes to learn various measured or
+derived quantities. Can set environment variable TEEM_VPROBE_HACK_ZI to limit
+probing to a single z slice.
+.IP
+sclY sxlZ>] [\-k00 <kern00>] [\-k11 <kern11>] [\-k22 <kern22>] [\-seed <N>] \e
+[\-ssn <SS #>] [\-ssr <scale range>] [\-sss <scale save path>] [\-ssw <SS \e
+pos>] [\-kssblur <kernel>] [\-kss <kernel>] [\-ssrn <ssrn>] [\-ssu] [\-rn] \e
+[\-gmc <min gradmag>] [\-t <type>] [\-o <nout>]
+.IP
+\fB\-i\fR <nin> = input volume
+.IP
+\fB\-k\fR <kind> = "kind" of volume ("scalar", "vector", "tensor", or
+.IP
+"dwi")
+.HP
+\fB\-v\fR <verbosity> = verbosity level (int); default: "1"
+.IP
+\fB\-q\fR <query> = the quantity (scalar, vector, or matrix) to learn by
+.IP
+probing (string)
+.TP
+\fB\-s\fR <sclX sclY sxlZ> = scaling factor for resampling on each axis (>1.0 :
+supersampling) (3 doubles); default: "1.0 1.0 1.0"
+.HP
+\fB\-k00\fR <kern00> = kernel for gageKernel00; default: "tent"
+.HP
+\fB\-k11\fR <kern11> = kernel for gageKernel11; default: "cubicd:1,0"
+.HP
+\fB\-k22\fR <kern22> = kernel for gageKernel22; default: "cubicdd:1,0"
+.IP
+\fB\-seed\fR <N> = RNG seed; mostly for debugging (unsigned int);
+.IP
+default: "42"
+.IP
+\fB\-ssn\fR <SS #> = how many scale\-space samples to evaluate, or, 0 to
+.IP
+turn\-off all scale\-space behavior (unsigned int);
+default: "0"
+.TP
+\fB\-ssr\fR <scale range> = range of scales in scale\-space (2 doubles);
+default: "nan nan"
+.PP
+\fB\-sss\fR <scale save path> = give a non\-empty path string (like "./") to save out
+.IP
+the pre\-blurred volumes computed for the stack
+(string); default: ""
+.TP
+\fB\-ssw\fR <SS pos> = "world"\-space position (true sigma) at which to
+sample in scale\-space (double); default: "0"
+.TP
+\fB\-kssblur\fR <kernel> = blurring kernel, to sample scale space;
+default: "dgauss:1,5"
+.TP
+\fB\-kss\fR <kernel> = kernel for reconstructing from scale space samples;
+default: "tent"
+.TP
+\fB\-ssrn\fR <ssrn> = enable derivative normalization based on scale space
+(int); default: "0"
+.IP
+\fB\-ssu\fR = do uniform samples along sigma, and not (by default)
+.IP
+samples according to the logarithm of diffusion time
+.IP
+\fB\-rn\fR = renormalize kernel weights at each new sample
+.IP
+location. "Accurate" kernels don't need this; doing it
+always makes things go slower
+.TP
+\fB\-gmc\fR <min gradmag> = For curvature\-based queries, use zero when gradient
+magnitude is below this (double); default: "0.0"
+.IP
+\fB\-t\fR <type> = type of output volume (type); default: "float"
+\fB\-o\fR <nout> = output volume (string); default: "\-"
+.SH "SEE ALSO"
+The full documentation for
+.B teem\-vprobe
+is maintained as a Texinfo manual. If the
+.B info
+and
+.B teem\-vprobe
+programs are properly installed at your site, the command
+.IP
+.B info teem\-vprobe
+.PP
+should give you access to the complete manual.
Added: packages/teem/tags/1.11.0~svn4425-2/debian/man/teem.1
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/man/teem.1?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/man/teem.1 (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/man/teem.1 Sun May 8 05:07:29 2011
@@ -1,0 +1,126 @@
+.TH "teem" "1" "April 2008" "" ""
+.SH "NAME"
+teem \- simple command\-line tools which provide fast and easy access to the functionality in the various libraries
+.SH "DESCRIPTION"
+\fBteem\-affine\fR: This uses air's AIR_AFFINE macro to print out the value which stands in
+the same relationship with the interval [<minOut>, <maxOut>] as <value>
+has with the interval [minIn, maxOut].
+
+
+\fBteem\-deconv\fR: Does deconvolution.
+
+
+\fBteem\-airSanity\fR:
+
+\fBteem\-cubic\fR:
+
+\fBteem\-emap\fR: Creates environment maps based on limn's "checker" normal quantization
+methods. By taking into account camera parameters, this allows for both lights
+in both world and view space. Solely out of laziness, the nrrd format is used
+for specifying the lights, but not to worry: you can use a simple un\-adorned
+text file, defining one light per line, with 7 values per light: 0/1
+(world/view space), R G B color, and X Y Z position.
+
+\fBteem\-gkms\fR: Semi\-Automatic Generation of Transfer Functions
+
+\fBteem\-idx2pos\fR: Converts from floating\-point "index" to floating\-point "position",
+given the centering of the data (cell vs. node), the range of positions, and
+the number of intervals into which position has been quantized.
+
+\fBteem\-ilk\fR: (I)mage (L)inear Trans(X\-\->K)forms. Applies linear (homogenous
+coordinate) transforms to a given image, using the given kernel for resampling.
+
+\fBteem\-miter\fR: A simple but effective little volume renderer.
+
+\fBteem\-mrender\fR: A demonstration of hoover, gage, and nrrd measures. Uses hoover to
+cast rays through a volume (scalar, vector, or tensor), gage to measure one of
+various quantities along the rays, and a specified nrrd measure to reduce all
+the values along a ray down to one scalar, which is saved in the output
+(double) image.
+
+\fBteem\-ninspect\fR: Quick way of seeing what's inside a 3D volume. A color image of
+three axis\-aligned projections is composed of histogram\-equalized and quantized
+images of the summation (red), variance (green), and maximum (blue) intensity
+projections. If volume is orientation in RAS space, then a standard orientation
+is used for projections and projections are upsampled (with box kernel) to have
+isotropic pixels.
+
+\fBteem\-ninspect\fR: Quick way of seeing what's inside a 3D volume. A color image of
+three axis\-aligned projections is composed of histogram\-equalized and quantized
+images of the summation (red), variance (green), and maximum (blue) intensity
+projections. If volume is orientation in RAS space, then a standard orientation
+is used for projections and projections are upsampled (with box kernel) to have
+isotropic pixels.
+
+\fBteem\-nrrdSanity\fR:
+
+\fBteem\-overrgb\fR: Composites an RGBA nrrd over a background color (or image), after
+doing gamma correction, then quantizes to an 8\-bit image. Actually, the input
+nrrd can have more than 4 values per pixel, but only the first four are used.
+If the RGBA nrrd is floating point, the values are taken at face value; if it
+is fixed point, the values interpreted as having been quantized (so that 8\-bit
+RGBA images will act as you expect). When compositing with a background image,
+the given background image does not have to be the same size as the input
+image; it will be resampled (with linear interpolation) to fit.
+
+
+\fBteem\-pos2idx\fR: Converts from floating\-point "position" to floating\-point "index",
+given the centering of the data (cell vs. node), the range of positions, and
+the number of intervals into which position has been quantized.
+
+
+\fBteem\-pprobe\fR: Uses gageProbe() to query scalar or vector volumes at a single probe
+location.
+
+
+
+\fBteem\-qbert\fR: Generates volume datasets friendly to hardware\-based volume renderers.
+The main value of this is a means of combining the functions of resampling a
+dataset to a particular size, measuring first (and optionally second)
+derivatives, and doing some semi\-intelligent quantization of the derivative
+values down to 8\-bits (if quantization is desired). The various up and down
+sampling, as well as the the VGH measurements, can be done with various nrrd
+kernels. Also, histogram\-equalized VG and VH scatterplots can be generated at a
+specified resolution.
+
+
+\fBteem\-talkweb\fR: Generates HTML pages from slide images and text. This program takes
+multiple inputs: a template for the table of contents that will become
+"index.html" ("\-i"), a template for the pages generated for each slide e.g.
+"slide000.html" ("\-t"), and a script text file that contains all the
+information that will go into the slide pages. The format of this file is:
+ \- Seperator line indicating slide transitions, e.g. "\-\-\-\-\-\-\-\-\-\-\-\-\-"
+ \- Title of first slide (one line)
+ \- Filename for image to put on first slide (one line)
+ \- Body of HTML text to put with the slide image (multiple lines)
+ \- Seperator
+followed by information for the second slide, and so forth. Textual
+subtitutions are performed in the template files, according to the replacement
+tags ("\-r", see below). Within the slide pages, navigation arrows are based on
+remaining command\-line options.
+
+\fBteem\-tend\fR: Diffusion Tensor Processing and Analysis
+
+\fBteem\-undos\fR
+undos: Converts from DOS text files to normal (converting LF\-CR pairs to just
+CR), or, with the "\-r" option, convert back to DOS, for whatever sick and
+twisted reason you'd have to do that. Can also handle legacy MAC text files
+(only LF). Unlike the simple sed or perl scripts for this purpose, this program
+is careful to be idempotent. Also, this makes an effort to not meddle with
+binary files (on which this may be mistakenly invoked). A message is printed to
+stderr for all the files actually modified.
+
+\fBteem\-ungantry\fR: Gantry tilt be gone! This program is actually of limited utility: it
+can only change the tilt by shearing with the X and Z axis fixed, by some angle
+"around" the X axis, assuming that (X,Y,Z) is a right\-handed frame.
+
+
+\fBteem\-unu\fR: Utah Nrrd Utilities command\-line interface
+
+
+\fBteem\-vprobe\fR: Shows off the functionality of the gage library. Uses gageProbe() to
+query various kinds of volumes to learn various measured or derived quantities.
+Can set environment variable TEEM_VPROBE_HACK_ZI to limit probing to a single z
+slice.
+.SH "SEE ALSO"
+slicer(1)
Added: packages/teem/tags/1.11.0~svn4425-2/debian/patches/debian-changes-1.11.0~svn4425-1
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/patches/debian-changes-1.11.0%7Esvn4425-1?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/patches/debian-changes-1.11.0~svn4425-1 (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/patches/debian-changes-1.11.0~svn4425-1 Sun May 8 05:07:29 2011
@@ -1,0 +1,117 @@
+Description: Upstream changes introduced in version 1.11.0~svn4425-1
+ This patch has been created by dpkg-source during the package build.
+ Here's the last changelog entry, hopefully it gives details on why
+ those changes were made:
+ .
+ teem (1.11.0~svn4425-1) experimental; urgency=low
+ .
+ * New upstream snapshot
+ * Switch to dpkg-source 3.0 (quilt) format
+ * Remove static libraries
+ * Added debug package
+ * Removed DM-Upload-Allowed: yes
+ * Bump Standards-Version: 3.9.1
+ * Changed package name libteem1-dev -> libteem-dev
+ * Bump ABI version, libteem1 -> libteem2
+ .
+ The person named in the Author field signed this changelog entry.
+Author: Dominique Belhachemi <domibel at debian.org>
+
+---
+The information above should follow the Patch Tagging Guidelines, please
+checkout http://dep.debian.net/deps/dep3/ to learn about the format. Here
+are templates for supplementary fields that you might want to add:
+
+Origin: <vendor|upstream|other>, <url of original patch>
+Bug: <url in upstream bugtracker>
+Bug-Debian: http://bugs.debian.org/<bugnumber>
+Bug-Ubuntu: https://launchpad.net/bugs/<bugnumber>
+Forwarded: <no|not-needed|url proving that it has been forwarded>
+Reviewed-By: <name and email of someone who approved the patch>
+Last-Update: <YYYY-MM-DD>
+
+--- teem-1.11.0~svn4425.orig/CMakeLists.txt
++++ teem-1.11.0~svn4425/CMakeLists.txt
+@@ -352,7 +352,7 @@ SET_TARGET_PROPERTIES(teem PROPERTIES
+ BUILD_WITH_INSTALL_RPATH OFF
+ INSTALL_RPATH ${CMAKE_INSTALL_PREFIX}/lib
+ INSTALL_NAME_DIR ${CMAKE_INSTALL_PREFIX}/lib
+- SOVERSION 1
++ SOVERSION 2
+ VERSION ${Teem_VERSION_STRING}
+ )
+
+--- teem-1.11.0~svn4425.orig/src/bin/CMakeLists.txt
++++ teem-1.11.0~svn4425/src/bin/CMakeLists.txt
+@@ -32,36 +32,36 @@ MACRO(CREATE_EXEC name sources)
+ ENDMACRO(CREATE_EXEC)
+
+ # These binaries should not be depending on BUILD_EXPERIMENTAL_LIBS
+-CREATE_EXEC(nrrdSanity nrrdSanity.c)
+-CREATE_EXEC(overrgb overrgb.c)
+-CREATE_EXEC(mrender mrender.c)
+-CREATE_EXEC(miter miter.c)
+-CREATE_EXEC(vprobe vprobe.c)
+-CREATE_EXEC(gprobe gprobe.c)
+-CREATE_EXEC(unu unu.c)
+-CREATE_EXEC(tend tend.c)
++CREATE_EXEC(teem-nrrdSanity nrrdSanity.c)
++CREATE_EXEC(teem-overrgb overrgb.c)
++CREATE_EXEC(teem-mrender mrender.c)
++CREATE_EXEC(teem-miter miter.c)
++CREATE_EXEC(teem-vprobe vprobe.c)
++CREATE_EXEC(teem-gprobe gprobe.c)
++CREATE_EXEC(teem-unu unu.c)
++CREATE_EXEC(teem-tend tend.c)
+
+ # NOTE: The BUILD_EXPERIMENTAL_LIBS-dependent inclusion of binaries has to be
+ # done with knowledge of how BUILD_EXPERIMENTAL_LIBS behaves in the top-level
+ # CMakeLists.txt file
+ IF(BUILD_EXPERIMENTAL_APPS)
+- CREATE_EXEC(airSanity airSanity.c)
+- CREATE_EXEC(affine affine.c)
+- CREATE_EXEC(cubic cubic.c)
+- CREATE_EXEC(undos undos.c)
+- CREATE_EXEC(idx2pos idx2pos.c)
+- CREATE_EXEC(pos2idx pos2idx.c)
+- CREATE_EXEC(qbert qbert.c)
+- CREATE_EXEC(emap emap.c)
+- CREATE_EXEC(talkweb talkweb.c)
+- CREATE_EXEC(pprobe pprobe.c)
+- CREATE_EXEC(ninspect ninspect.c)
+- CREATE_EXEC(ungantry ungantry.c)
+- CREATE_EXEC(deconv deconv.c)
++ CREATE_EXEC(teem-airSanity airSanity.c)
++ CREATE_EXEC(teem-affine affine.c)
++ CREATE_EXEC(teem-cubic cubic.c)
++ CREATE_EXEC(teem-undos undos.c)
++ CREATE_EXEC(teem-idx2pos idx2pos.c)
++ CREATE_EXEC(teem-pos2idx pos2idx.c)
++ CREATE_EXEC(teem-qbert qbert.c)
++ CREATE_EXEC(teem-emap emap.c)
++ CREATE_EXEC(teem-talkweb talkweb.c)
++ CREATE_EXEC(teem-pprobe pprobe.c)
++ CREATE_EXEC(teem-ninspect ninspect.c)
++ CREATE_EXEC(teem-ungantry ungantry.c)
++ CREATE_EXEC(teem-deconv deconv.c)
+ IF(BUILD_EXPERIMENTAL_LIBS)
+- CREATE_EXEC(ilk ilk.c)
+- CREATE_EXEC(gkms gkms.c)
+- CREATE_EXEC(spots spots.c)
++ CREATE_EXEC(teem-ilk ilk.c)
++ CREATE_EXEC(teem-gkms gkms.c)
++ CREATE_EXEC(teem-spots spots.c)
+ ENDIF(BUILD_EXPERIMENTAL_LIBS)
+ ENDIF(BUILD_EXPERIMENTAL_APPS)
+
+--- teem-1.11.0~svn4425.orig/Testing/CMakeLists.txt
++++ teem-1.11.0~svn4425/Testing/CMakeLists.txt
+@@ -31,7 +31,7 @@ IF(Teem_BINARY_DIR)
+ ENDIF(NOT EXECUTABLE_OUTPUT_PATH)
+ ENDIF(Teem_BINARY_DIR)
+
+-ADD_TEST(nrrd.Sanity ${EXECUTABLE_OUTPUT_PATH}/nrrdSanity)
++ADD_TEST(nrrd.Sanity ${EXECUTABLE_OUTPUT_PATH}/teem-nrrdSanity)
+
+ ADD_SUBDIRECTORY(nrrd)
+ ADD_SUBDIRECTORY(biff)
Added: packages/teem/tags/1.11.0~svn4425-2/debian/patches/series
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/patches/series?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/patches/series (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/patches/series Sun May 8 05:07:29 2011
@@ -1,0 +1,1 @@
+debian-changes-1.11.0~svn4425-1
Added: packages/teem/tags/1.11.0~svn4425-2/debian/rules
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/rules?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/rules (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/rules Sun May 8 05:07:29 2011
@@ -1,0 +1,49 @@
+#!/usr/bin/make -f
+
+# Set this value to 0/1 to turn off/on verbose mode.
+export DH_VERBOSE=0
+
+include /usr/share/cdbs/1/rules/debhelper.mk
+include /usr/share/cdbs/1/class/cmake.mk
+include /usr/share/cdbs/1/rules/patchsys-quilt.mk
+
+ABI_VERSION := 2
+
+DEB_DH_STRIP_ARGS := --dbg-package=libteem${ABI_VERSION}-dbg
+
+DEB_BUILD_PARALLEL := true
+
+DEB_CMAKE_EXTRA_FLAGS = \
+ -DCMAKE_INSTALL_PREFIX:PATH=/usr \
+ -DCMAKE_BUILD_TYPE:STRING=Release \
+ -DCMAKE_VERBOSE_MAKEFILE=$(DH_VERBOSE) \
+ -DCMAKE_SKIP_RPATH:BOOL=ON \
+ -DBUILD_EXPERIMENTAL_APPS:BOOL=OFF \
+ -DBUILD_EXPERIMENTAL_LIBS:BOOL=OFF \
+ -DBUILD_TESTING:BOOL=ON \
+ -DTeem_USE_LIB_INSTALL_SUBDIR:BOOL=ON \
+ -DBUILD_SHARED_LIBS:BOOL=ON \
+
+
+build/libteem${ABI_VERSION}::
+ - cd $(DEB_BUILDDIR) && LD_LIBRARY_PATH=`pwd`/bin:$$LD_LIBRARY_PATH ctest -D ExperimentalTest
+
+install/libteem${ABI_VERSION}::
+ dh_install -plibteem${ABI_VERSION} debian/tmp/usr/lib/Teem-1.11.0/*so.* usr/lib
+
+install/libteem-dev::
+ dh_install -plibteem-dev debian/tmp/usr/lib/Teem-1.11.0/*.so usr/lib
+ dh_install -plibteem-dev debian/tmp/usr/lib/Teem-1.11.0/*.cmake usr/lib/Teem-1.11.0
+ dh_install -plibteem-dev debian/tmp/usr/include/teem/* usr/include/teem
+
+install/teem-doc::
+ doxygen debian/Doxyfile
+ # remove zero byte files
+ find doc/ -depth -empty | xargs rm -rf
+ dh_install -pteem-doc doc/* usr/share/doc/teem-doc
+
+install/teem-apps::
+ dh_install -pteem-apps debian/tmp/usr/bin/* usr/bin
+
+get-orig-source:
+ /bin/sh $(CURDIR)/debian/get-orig-source
Propchange: packages/teem/tags/1.11.0~svn4425-2/debian/rules
------------------------------------------------------------------------------
svn:executable = *
Added: packages/teem/tags/1.11.0~svn4425-2/debian/source/format
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/source/format?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/source/format (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/source/format Sun May 8 05:07:29 2011
@@ -1,0 +1,1 @@
+3.0 (quilt)
Added: packages/teem/tags/1.11.0~svn4425-2/debian/teem-apps.manpages
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/teem-apps.manpages?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/teem-apps.manpages (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/teem-apps.manpages Sun May 8 05:07:29 2011
@@ -1,0 +1,9 @@
+debian/man/teem.1
+debian/man/teem-gprobe.1
+debian/man/teem-miter.1
+debian/man/teem-mrender.1
+debian/man/teem-nrrdSanity.1
+debian/man/teem-overrgb.1
+debian/man/teem-tend.1
+debian/man/teem-unu.1
+debian/man/teem-vprobe.1
Added: packages/teem/tags/1.11.0~svn4425-2/debian/teem-doc.doc-base
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/teem-doc.doc-base?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/teem-doc.doc-base (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/teem-doc.doc-base Sun May 8 05:07:29 2011
@@ -1,0 +1,25 @@
+Document: teem-doc
+Title: TEEM class documentation
+Author: Various
+Abstract: Teem - Tools to process and visualize scientific data and images
+ Teem is a coordinated group of libraries for representing, processing, and
+ visualizing scientific raster data. Teem includes command-line tools that
+ permit the library functions to be quickly applied to files and streams,
+ without having to write any code. The most important and useful libraries in
+ Teem are:
+ .
+ * Nrrd (and the unu command-line tool on top of it) supports a range of
+ operations for transforming N-dimensional raster data (resample, crop,
+ slice, project, histogram, etc.), as well as the NRRD file format for
+ storing arrays and their meta-information.
+ * Gage: fast convolution-based measurements at arbitrary point locations in
+ volume datasets (scalar, vector, tensor, etc.)
+ * Mite: a multi-threaded ray-casting volume render with transfer functions
+ based on any quantity Gage can measure
+ * Ten: for estimating, processing, and visualizing diffusion tensor fields,
+ including fiber tractography methods.
+Section: Programming
+
+Format: HTML
+Index: /usr/share/doc/teem-doc/html/index.html
+Files: /usr/share/doc/teem-doc/html/*.html
Added: packages/teem/tags/1.11.0~svn4425-2/debian/watch
URL: http://svn.debian.org/wsvn/debian-science/packages/teem/tags/1.11.0%7Esvn4425-2/debian/watch?rev=38472&op=file
==============================================================================
--- packages/teem/tags/1.11.0~svn4425-2/debian/watch (added)
+++ packages/teem/tags/1.11.0~svn4425-2/debian/watch Sun May 8 05:07:29 2011
@@ -1,0 +1,2 @@
+version=3
+opts="dversionmangle=s/\.dfsg1//" http://sf.net/teem/teem-(.*)-src\.tar\.gz
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