r44047 - in /packages/fenics/dolfin/trunk/debian: changelog copyright copyright_hints
johannr-guest at users.alioth.debian.org
johannr-guest at users.alioth.debian.org
Tue Nov 22 11:10:51 UTC 2011
Author: johannr-guest
Date: Tue Nov 22 11:10:50 2011
New Revision: 44047
URL: http://svn.debian.org/wsvn/debian-science/?sc=1&rev=44047
Log:
Update copyright files.
Modified:
packages/fenics/dolfin/trunk/debian/changelog
packages/fenics/dolfin/trunk/debian/copyright
packages/fenics/dolfin/trunk/debian/copyright_hints
Modified: packages/fenics/dolfin/trunk/debian/changelog
URL: http://svn.debian.org/wsvn/debian-science/packages/fenics/dolfin/trunk/debian/changelog?rev=44047&op=diff
==============================================================================
--- packages/fenics/dolfin/trunk/debian/changelog (original)
+++ packages/fenics/dolfin/trunk/debian/changelog Tue Nov 22 11:10:50 2011
@@ -1,11 +1,12 @@
-dolfin (1.0-rc1-1) UNRELEASED; urgency=low
+dolfin (1.0-rc1-1) unstable; urgency=low
* New upstream release.
* debian/control: Update Homepage field.
* Disable Trilinos support (version >= 10.8.1 now required).
* Remove patch for building with Trilinos.
-
- -- Johannes Ring <johannr at simula.no> Tue, 22 Nov 2011 09:36:53 +0100
+ * Update debian/copyright and debian/copyright_hints.
+
+ -- Johannes Ring <johannr at simula.no> Tue, 22 Nov 2011 12:10:02 +0100
dolfin (1.0-beta2-1) unstable; urgency=low
Modified: packages/fenics/dolfin/trunk/debian/copyright
URL: http://svn.debian.org/wsvn/debian-science/packages/fenics/dolfin/trunk/debian/copyright?rev=44047&op=diff
==============================================================================
--- packages/fenics/dolfin/trunk/debian/copyright (original)
+++ packages/fenics/dolfin/trunk/debian/copyright Tue Nov 22 11:10:50 2011
@@ -1,12 +1,58 @@
Format: http://svn.debian.org/wsvn/dep/web/deps/dep5.mdwn?rev=174
Upstream-Name: DOLFIN
Upstream-Contact: dolfin at lists.launchpad.net
- http://www.fenicsproject.org
+ http://fenicsproject.org
Source: http://launchpad.net/dolfin
Files: *
Copyright: 2002-2011, Anders Logg
2005-2011, Garth N. Wells
+License: LGPL-3+
+
+Files: bench/function/extrapolation/python/bench
+ demo/pde/subdomains-poisson/python/demo_subdomains-poisson.py
+ demo/undocumented/auto-adaptive-navier-stokes/cpp/AdaptiveNavierStokes.ufl
+ demo/undocumented/auto-adaptive-navier-stokes/cpp/main.cpp
+ demo/undocumented/auto-adaptive-navier-stokes/python/demo_auto-adaptive-navier-stokes.py
+ demo/undocumented/extrapolation/python/demo2.py
+ demo/undocumented/meshfunction-refinement/cpp/main.cpp
+ demo/undocumented/neumann-poisson/cpp/main.cpp
+ demo/undocumented/neumann-poisson/python/demo_neumann-poisson.py
+ doc/copy_and_split_demo_doc.py
+ doc/generate_api_doc.py
+ doc/generate_main_index.py
+ dolfin/adaptivity/AdaptiveLinearVariationalSolver.cpp
+ dolfin/adaptivity/AdaptiveLinearVariationalSolver.h
+ dolfin/adaptivity/AdaptiveNonlinearVariationalSolver.cpp
+ dolfin/adaptivity/AdaptiveNonlinearVariationalSolver.h
+ dolfin/adaptivity/ErrorControl.cpp
+ dolfin/adaptivity/ErrorControl.h
+ dolfin/adaptivity/GenericAdaptiveVariationalSolver.cpp
+ dolfin/adaptivity/GenericAdaptiveVariationalSolver.h
+ dolfin/adaptivity/GoalFunctional.cpp
+ dolfin/adaptivity/GoalFunctional.h
+ dolfin/adaptivity/LocalAssembler.cpp
+ dolfin/adaptivity/LocalAssembler.h
+ dolfin/adaptivity/SpecialFacetFunction.cpp
+ dolfin/adaptivity/SpecialFacetFunction.h
+ dolfin/adaptivity/adaptivesolve.cpp
+ dolfin/adaptivity/adaptivesolve.h
+ dolfin/adaptivity/marking.cpp
+ dolfin/adaptivity/marking.h
+ dolfin/swig/adaptivity_pre.i
+ site-packages/dolfin/fem/adaptivesolving.py
+ site-packages/dolfin/fem/errorcontrolgenerator.py
+ site-packages/dolfin/fem/formmanipulations.py
+ site-packages/dolfin_utils/wrappers/form.py
+ site-packages/dolfin_utils/wrappers/functionspace.py
+ site-packages/dolfin_utils/wrappers/goalfunctional.py
+ site-packages/dolfin_utils/wrappers/wrappers.py
+ test/documentation/test.py
+ test/system/ufl-jit-assemble-chain/form_operations.py
+ test/system/ufl-jit-assemble-chain/test.py
+ test/unit/adaptivity/python/TimeSeries.py
+ test/unit/adaptivity/python/errorcontrol.py
+Copyright: 2010-2011, Marie E. Rognes
License: LGPL-3+
Files: demo/la/eigenvalue/python/demo_eigenvalue.py
@@ -14,7 +60,6 @@
demo/pde/biharmonic/python/demo_biharmonic.py
demo/pde/mixed-poisson/python/demo_mixed-poisson.py
demo/undocumented/advection-diffusion/python/demo_advection-diffusion.py
- demo/undocumented/aliev-panfilov/python/demo.py
demo/undocumented/built-in/cpp/main.cpp
demo/undocumented/conditional/cpp/Conditional.ufl
demo/undocumented/conditional/cpp/main.cpp
@@ -31,7 +76,6 @@
demo/undocumented/poisson1D/cpp/main.cpp
demo/undocumented/poisson1D/python/demo_poisson1D.py
demo/undocumented/quadrature/python/demo_quadrature.py
- demo/undocumented/simple/python/demo_simple.py
demo/undocumented/spatial-coordinates/cpp/SpatialCoordinates.ufl
demo/undocumented/spatial-coordinates/cpp/main.cpp
demo/undocumented/spatial-coordinates/python/demo_spatial-coordinates.py
@@ -47,7 +91,9 @@
dolfin/mesh/UnitInterval.h
dolfin/swig/codeexamples.py
dolfin/swig/documentation.py
-Copyright: 2007-2010, Kristian B. Oelgaard
+ site-packages/dolfin_utils/documentation/generatepythonrst.py
+ test/documentation/verify_demo_code_snippets.py
+Copyright: 2007-2011, Kristian B. Oelgaard
License: LGPL-3+
Files: bench/function/evaluation/cpp/main.cpp
@@ -55,122 +101,57 @@
demo/undocumented/entityintersection/cpp/main.cpp
demo/undocumented/entityintersection/python/demo_entityintersection.py
demo/undocumented/meshintersection/3D/python/demo_3D.py
- dolfin/mesh/IntersectionOperator.cpp
- dolfin/mesh/IntersectionOperator.h
- dolfin/mesh/IntersectionOperatorImplementation.h
- dolfin/mesh/MeshPrimitive.h
- dolfin/mesh/Point_3_Bbox_3_intersection.h
- dolfin/mesh/Point_3_Iso_Cuboid_3_intersection.h
- dolfin/mesh/Point_3_Line_3_intersection.h
- dolfin/mesh/Point_3_Point_3_intersection.h
- dolfin/mesh/Point_3_Ray_3_intersection.h
- dolfin/mesh/Point_3_Segment_3_intersection.h
- dolfin/mesh/Point_3_Tetrahedron_3_intersection.h
- dolfin/mesh/Point_3_Triangle_3_intersection.h
- dolfin/mesh/PrimitiveIntersector.cpp
- dolfin/mesh/PrimitiveIntersector.h
- dolfin/mesh/PrimitiveTraits.h
- dolfin/mesh/Segment_3_Segment_3_intersection.h
- dolfin/mesh/Segment_3_Tetrahedron_3_intersection.h
- dolfin/mesh/Tetrahedron_3_Bbox_3_intersection.h
- dolfin/mesh/Tetrahedron_3_Tetrahedron_3_intersection.h
- dolfin/mesh/Tree_Traits.h
- dolfin/mesh/Triangle_3_Tetrahedron_3_do_intersect_SCK.cpp
- dolfin/mesh/Triangle_3_Tetrahedron_3_do_intersect_SCK.h
- dolfin/mesh/added_intersection_3.h
- dolfin/mesh/cgal_includes.h
+ dolfin/intersection/IntersectionOperator.cpp
+ dolfin/intersection/IntersectionOperator.h
+ dolfin/intersection/IntersectionOperatorImplementation.h
+ dolfin/intersection/MeshPrimitive.h
+ dolfin/intersection/Point_3_Bbox_3_intersection.h
+ dolfin/intersection/Point_3_Iso_Cuboid_3_intersection.h
+ dolfin/intersection/Point_3_Line_3_intersection.h
+ dolfin/intersection/Point_3_Point_3_intersection.h
+ dolfin/intersection/Point_3_Ray_3_intersection.h
+ dolfin/intersection/Point_3_Segment_3_intersection.h
+ dolfin/intersection/Point_3_Tetrahedron_3_intersection.h
+ dolfin/intersection/Point_3_Triangle_3_intersection.h
+ dolfin/intersection/PrimitiveIntersector.cpp
+ dolfin/intersection/PrimitiveIntersector.h
+ dolfin/intersection/PrimitiveTraits.h
+ dolfin/intersection/Segment_3_Segment_3_intersection.h
+ dolfin/intersection/Segment_3_Tetrahedron_3_intersection.h
+ dolfin/intersection/Tetrahedron_3_Bbox_3_intersection.h
+ dolfin/intersection/Tetrahedron_3_Tetrahedron_3_intersection.h
+ dolfin/intersection/Tree_Traits.h
+ dolfin/intersection/Triangle_3_Tetrahedron_3_do_intersect_SCK.cpp
+ dolfin/intersection/Triangle_3_Tetrahedron_3_do_intersect_SCK.h
+ dolfin/intersection/added_intersection_3.h
+ dolfin/intersection/cgal_includes.h
dolfin/quadrature/BarycenterQuadrature.cpp
dolfin/quadrature/BarycenterQuadrature.h
dolfin/swig/std_set_typemaps.i
+ test/unit/intersection/python/test.py
test/unit/quadrature/cpp/test.cpp
test/unit/quadrature/python/test.py
-Copyright: 2009-2010, Andre Massing
-License: LGPL-3+
-
-Files: demo/undocumented/meshfunction/cpp/main.cpp
- dolfin/io/XMLArray.cpp
- dolfin/io/XMLArray.h
- dolfin/io/XMLDolfin.cpp
- dolfin/io/XMLDolfin.h
- dolfin/io/XMLFile.cpp
- dolfin/io/XMLFile.h
- dolfin/io/XMLFunctionPlotData.cpp
- dolfin/io/XMLHandler.cpp
- dolfin/io/XMLHandler.h
- dolfin/io/XMLIndent.cpp
- dolfin/io/XMLIndent.h
- dolfin/io/XMLLocalMeshData.cpp
- dolfin/io/XMLLocalMeshData.h
- dolfin/io/XMLMap.cpp
- dolfin/io/XMLMap.h
- dolfin/io/XMLMeshData.cpp
- dolfin/io/XMLMeshData.h
- dolfin/io/XMLMeshFunction.cpp
- dolfin/io/XMLMeshFunction.h
- dolfin/io/XMLSkipper.cpp
- dolfin/io/XMLSkipper.h
- dolfin/io/XMLVectorMapping.cpp
- dolfin/io/XMLVectorMapping.h
- dolfin/la/GenericSparsityPattern.h
- dolfin/la/LinearAlgebraFactory.h
- dolfin/la/PETScFactory.cpp
- dolfin/la/PETScFactory.h
- dolfin/la/uBLASFactory.h
- dolfin/mesh/LocalMeshData.cpp
- dolfin/mesh/LocalMeshData.h
- dolfin/mesh/MeshFunction.cpp
- dolfin/swig/exceptions.i
- dolfin/swig/numpy_typemaps.i
-Copyright: 2005-2009, Ola Skavhaug
-License: LGPL-3+
-
-Files: bench/function/extrapolation/python/bench
- demo/undocumented/auto-adaptive-navier-stokes/cpp/AdaptiveNavierStokes.ufl
- demo/undocumented/auto-adaptive-navier-stokes/cpp/main.cpp
- demo/undocumented/auto-adaptive-navier-stokes/python/demo_auto-adaptive-navier-stokes.py
- demo/undocumented/extrapolation/python/demo2.py
- demo/undocumented/meshfunction-refinement/cpp/main.cpp
- demo/undocumented/neumann-poisson/cpp/main.cpp
- demo/undocumented/neumann-poisson/python/demo_neumann-poisson.py
- dolfin/adaptivity/AdaptiveDatum.cpp
- dolfin/adaptivity/AdaptiveDatum.h
- dolfin/adaptivity/AdaptiveVariationalSolver.cpp
- dolfin/adaptivity/AdaptiveVariationalSolver.h
- dolfin/adaptivity/ErrorControl.cpp
- dolfin/adaptivity/ErrorControl.h
- dolfin/adaptivity/GoalFunctional.cpp
- dolfin/adaptivity/GoalFunctional.h
- dolfin/adaptivity/LocalAssembler.cpp
- dolfin/adaptivity/LocalAssembler.h
- dolfin/adaptivity/SpecialFacetFunction.cpp
- dolfin/adaptivity/SpecialFacetFunction.h
- dolfin/adaptivity/marking.cpp
- dolfin/adaptivity/marking.h
- dolfin/swig/adaptivity_pre.i
- site-packages/dolfin_utils/wrappers/form.py
- site-packages/dolfin_utils/wrappers/functionspace.py
- site-packages/dolfin_utils/wrappers/goalfunctional.py
- site-packages/dolfin_utils/wrappers/wrappers.py
- test/unit/adaptivity/python/errorcontrol.py
-Copyright: 2010-2011, Marie E. Rognes
+Copyright: 2009-2011, Andre Massing
License: LGPL-3+
Files: bench/fem/speedup/cpp/submit-bench
demo/undocumented/dg-advection-diffusion/python/demo_dg-advection-diffusion.py
+ dolfin/common/defines.cpp
+ dolfin/common/defines.h
dolfin/swig/Indices.i
dolfin/swig/array_typemaps.i
+ dolfin/swig/common_post.i
dolfin/swig/common_pre.i
- dolfin/swig/defines.i
dolfin/swig/fem_post.i
dolfin/swig/function_post.i
dolfin/swig/la_get_set_items.i
dolfin/swig/log_post.i
dolfin/swig/log_pre.i
dolfin/swig/nls_pre.i
- dolfin/swig/ode_pre.i
dolfin/swig/parameter_post.i
dolfin/swig/parameter_pre.i
dolfin/swig/shared_ptr_classes.i
+ dolfin/swig/std_map_typemaps.i
dolfin/swig/std_pair_typemaps.i
dolfin/swig/std_vector_typemaps.i
dolfin/swig/version.i
@@ -180,9 +161,36 @@
site-packages/dolfin/functions/expression.py
site-packages/dolfin/functions/function.py
site-packages/dolfin/functions/functionspace.py
+ site-packages/dolfin_utils/pjobs/sge.py
+ test/unit/function/python/FunctionSpace.py
test/unit/la/cpp/test.cpp
test/unit/la/python/test.py
+ test/unit/mesh/python/MeshValueCollection.py
Copyright: 2005-2011, Johan Hake
+License: LGPL-3+
+
+Files: dolfin/fem/DirichletBC.cpp
+ dolfin/fem/DirichletBC.h
+ dolfin/fem/DofMap.cpp
+ dolfin/fem/DofMap.h
+ dolfin/fem/FiniteElement.h
+ dolfin/fem/GenericDofMap.h
+ dolfin/fem/LinearVariationalSolver.cpp
+ dolfin/fem/LinearVariationalSolver.h
+ dolfin/fem/NonlinearVariationalSolver.cpp
+ dolfin/fem/NonlinearVariationalSolver.h
+ dolfin/fem/VariationalProblem.cpp
+ dolfin/fem/VariationalProblem.h
+ dolfin/la/LinearSolver.h
+ dolfin/la/Matrix.h
+ dolfin/la/PETScBaseMatrix.cpp
+ dolfin/la/PETScKrylovMatrix.cpp
+ dolfin/la/PETScKrylovMatrix.h
+ dolfin/mesh/MeshValueCollection.h
+ dolfin/mesh/ParallelData.cpp
+ dolfin/mesh/ParallelData.h
+Copyright: 2004-2011, Anders Logg
+ 2004-2011, Garth N. Wells
License: LGPL-3+
Files: demo/undocumented/block-matrix/cpp/main.cpp
@@ -192,21 +200,17 @@
demo/undocumented/sym-dirichlet-bc/python/dg-demo.py
demo/undocumented/sym-dirichlet-bc/python/dg-speed-up-test.py
demo/undocumented/sym-dirichlet-bc/python/speed-up-test.py
- demo/undocumented/trilinos/python/demo2.py
demo/undocumented/trilinos/python/demo_trilinos.py
dolfin/la/BlockMatrix.cpp
dolfin/la/BlockMatrix.h
dolfin/la/BlockVector.cpp
dolfin/la/BlockVector.h
- dolfin/la/EpetraKrylovSolver.cpp
- dolfin/la/EpetraKrylovSolver.h
site-packages/dolfin/mesh/boundarysubdomainfinder.py
- test/unit/restriction/python/test.py
+ test/unit/fem/python/_old_restriction_test.py
Copyright: 2008, Kent-Andre Mardal
License: LGPL-3+
Files: demo/undocumented/elasticity/cpp/Elasticity.ufl
- demo/undocumented/stiff/cpp/TestProblem8.h
dolfin/la/PETScKrylovSolver.cpp
dolfin/la/PETScKrylovSolver.h
dolfin/la/PETScUserPreconditioner.cpp
@@ -218,33 +222,21 @@
utils/octave/pdemesh.m
utils/octave/pdeplot.m
utils/octave/pdesurf.m
-Copyright: 2003-2009, Johan Jansson
-License: LGPL-3+
-
-Files: dolfin/fem/DofMapBuilder.cpp
- dolfin/fem/DofMapBuilder.h
- dolfin/io/XMLFunctionPlotData.h
- dolfin/io/XMLMesh.cpp
- dolfin/io/XMLMesh.h
- dolfin/io/XMLVector.cpp
- dolfin/io/XMLVector.h
- dolfin/ode/ODECollection.cpp
- dolfin/ode/ODECollection.h
-Copyright: 2002-2009, Anders Logg
- 2002-2009, Ola Skavhaug
-License: LGPL-3+
-
-Files: demo/undocumented/elasticity/cpp/main.cpp
- dolfin/ode/ODE.cpp
- dolfin/ode/ODE.h
- dolfin/ode/ODESolver.cpp
- dolfin/ode/ODESolver.h
- dolfin/ode/Partition.cpp
- dolfin/ode/Partition.h
- dolfin/ode/TimeStepper.cpp
- dolfin/ode/TimeStepper.h
-Copyright: 2003-2011, Johan Jansson
- 2003-2011, Anders Logg
+Copyright: 2004-2009, Johan Jansson
+License: LGPL-3+
+
+Files: demo/undocumented/meshfunction/cpp/main.cpp
+ dolfin/io/SAX2AttributeParser.h
+ dolfin/la/GenericSparsityPattern.h
+ dolfin/la/LinearAlgebraFactory.h
+ dolfin/la/PETScFactory.cpp
+ dolfin/la/PETScFactory.h
+ dolfin/la/uBLASFactory.h
+ dolfin/mesh/LocalMeshData.cpp
+ dolfin/mesh/LocalMeshData.h
+ dolfin/swig/exceptions.i
+ dolfin/swig/numpy_typemaps.i
+Copyright: 2005-2009, Ola Skavhaug
License: LGPL-3+
Files: dolfin/mesh/MeshHierarchy.cpp
@@ -271,47 +263,6 @@
2008, Johannes Ring
License: LGPL-3+
-Files: dolfin/common/real.cpp
- dolfin/la/HighPrecision.cpp
- dolfin/la/HighPrecision.h
- dolfin/ode/ODESolution.cpp
- dolfin/ode/ODESolution.h
- dolfin/ode/StabilityAnalysis.cpp
- dolfin/ode/StabilityAnalysis.h
-Copyright: 2008-2011, Benjamin Kehlet
-License: LGPL-3+
-
-Files: demo/undocumented/simple/cpp/main.cpp
- dolfin/io/File.cpp
- dolfin/io/File.h
- dolfin/io/GenericFile.cpp
- dolfin/io/GenericFile.h
- dolfin/io/PythonFile.cpp
- dolfin/io/PythonFile.h
-Copyright: 2002-2009, Johan Hoffman
- 2002-2009, Anders Logg
-License: LGPL-3+
-
-Files: demo/undocumented/ale/cpp/main.cpp
- demo/undocumented/ale/python/demo_ale.py
- dolfin/ale/ALE.cpp
- dolfin/ale/ALE.h
- dolfin/ale/ALEType.h
- dolfin/ale/TransfiniteInterpolation.cpp
- dolfin/ale/TransfiniteInterpolation.h
-Copyright: 2008-2009, Solveig Bruvoll
- 2008-2009, Anders Logg
-License: LGPL-3+
-
-Files: demo/undocumented/curl-curl/cpp/CurrentDensity.ufl
- demo/undocumented/curl-curl/cpp/EddyCurrents.ufl
- demo/undocumented/curl-curl/cpp/main.cpp
- demo/undocumented/curl-curl/python/demo_curl-curl.py
- dolfin/fem/EqualityBC.cpp
- dolfin/fem/EqualityBC.h
-Copyright: 2009, Bartosz Sawicki
-License: LGPL-3+
-
Files: dolfin/la/MTL4Factory.cpp
dolfin/la/MTL4Factory.h
dolfin/la/MTL4Matrix.cpp
@@ -321,14 +272,14 @@
Copyright: 2008, Dag Lindbo
License: LGPL-3+
-Files: demo/undocumented/partitioning/cpp/main.cpp
- demo/undocumented/partitioning/python/demo_partitioning.py
- dolfin/io/XMLMatrix.cpp
- dolfin/io/XMLMatrix.h
- dolfin/io/XMLParameters.cpp
- dolfin/io/XMLParameters.h
-Copyright: 2004-2011, Ola Skavhaug
- 2004-2011, Anders Logg
+Files: dolfin/fem/SystemAssembler.cpp
+ dolfin/fem/SystemAssembler.h
+ dolfin/la/EpetraKrylovSolver.cpp
+ dolfin/la/EpetraKrylovSolver.h
+ dolfin/la/EpetraLUSolver.cpp
+ dolfin/la/EpetraLUSolver.h
+Copyright: 2008-2011, Kent-Andre Mardal
+ 2008-2011, Garth N. Wells
License: LGPL-3+
Files: bench/fem/assembly/python/broken
@@ -339,12 +290,36 @@
Copyright: 2007-2008, Ilmar Wilbers
License: LGPL-3+
+Files: site-packages/dolfin/compilemodules/expressions.py
+ site-packages/dolfin/compilemodules/subdomains.py
+ site-packages/dolfin_utils/pjobs/pjobs.py
+ site-packages/dolfin_utils/pjobs/torque.py
+ site-packages/dolfin_utils/wrappers/capsules.py
+Copyright: 2008-2009, Martin Sandve Alnes
+License: LGPL-3+
+
+Files: demo/undocumented/ale/cpp/main.cpp
+ demo/undocumented/ale/python/demo_ale.py
+ dolfin/ale/ALE.cpp
+ dolfin/ale/ALE.h
+ dolfin/ale/ALEType.h
+Copyright: 2008-2011, Solveig Bruvoll
+ 2008-2011, Anders Logg
+License: LGPL-3+
+
Files: demo/pde/mixed-poisson/cpp/MixedPoisson.ufl
demo/pde/mixed-poisson/cpp/main.cpp
demo/undocumented/auto-adaptive-poisson/cpp/AdaptivePoisson.ufl
demo/undocumented/auto-adaptive-poisson/cpp/main.cpp
-Copyright: 2006-2010, Anders Logg
- 2006-2010, Marie E. Rognes
+Copyright: 2006-2011, Anders Logg
+ 2006-2011, Marie E. Rognes
+License: LGPL-3+
+
+Files: demo/undocumented/curl-curl/cpp/CurrentDensity.ufl
+ demo/undocumented/curl-curl/cpp/EddyCurrents.ufl
+ demo/undocumented/curl-curl/cpp/main.cpp
+ demo/undocumented/curl-curl/python/demo_curl-curl.py
+Copyright: 2009, Bartosz Sawicki
License: LGPL-3+
Files: demo/undocumented/waveguide/cpp/Forms.py
@@ -358,39 +333,26 @@
dolfin/la/PETScMatrix.h
dolfin/la/PETScVector.cpp
dolfin/la/PETScVector.h
-Copyright: 2004-2010, Johan Hoffman
- 2004-2010, Johan Jansson
- 2004-2010, Anders Logg
-License: LGPL-3+
-
-Files: dolfin/fem/SystemAssembler.cpp
- dolfin/fem/SystemAssembler.h
- dolfin/la/EpetraLUSolver.cpp
- dolfin/la/EpetraLUSolver.h
-Copyright: 2008-2010, Kent-Andre Mardal
- 2008-2010, Garth N. Wells
-License: LGPL-3+
-
-Files: site-packages/dolfin/compilemodules/expressions.py
- site-packages/dolfin/compilemodules/subdomains.py
- site-packages/dolfin_utils/pjobs/pjobs.py
- site-packages/dolfin_utils/wrappers/capsules.py
-Copyright: 2008-2009, Martin Sandve Alnes
+Copyright: 2004-2011, Johan Hoffman
+ 2004-2011, Johan Jansson
+ 2004-2011, Anders Logg
License: LGPL-3+
Files: dolfin/graph/ParMETIS.cpp
dolfin/graph/ParMETIS.h
dolfin/mesh/MeshPartitioning.cpp
dolfin/mesh/MeshPartitioning.h
-Copyright: 2008-2009, Niclas Jansson
- 2008-2009, Ola Skavhaug
- 2008-2009, Anders Logg
-License: LGPL-3+
-
-Files: dolfin/common/MPI.cpp
- dolfin/common/MPI.h
- test/unit/io/cpp/test.cpp
-Copyright: 2007, Magnus Vikstrøm
+Copyright: 2008-2011, Niclas Jansson
+ 2008-2011, Ola Skavhaug
+ 2008-2011, Anders Logg
+License: LGPL-3+
+
+Files: dolfin/io/XMLFile.cpp
+ dolfin/io/XMLLocalMeshSAX.cpp
+ dolfin/io/XMLLocalMeshSAX.h
+ dolfin/mesh/MeshFunction.cpp
+Copyright: 2006-2011, Ola Skavhaug
+ 2006-2011, Garth N. Wells
License: LGPL-3+
Files: demo/undocumented/elastodynamics/cpp/DG0_eps_xx.ufl
@@ -400,22 +362,29 @@
2009, Garth N. Wells
License: LGPL-3+
-Files: demo/undocumented/adaptive-poisson/python/demo_adaptive-poisson.py
- demo/undocumented/lorenz/python/demo.py
- demo/undocumented/lorenz/python/plot.py
-Copyright: 2008, Rolv Erlend Bredesen
-License: LGPL-3+
-
Files: dolfin/log/Progress.h
dolfin/log/log.h
Copyright: 2003-2011, Anders Logg
2003-2011, Jim Tilander
License: LGPL-3+
+Files: dolfin/fem/DofMapBuilder.cpp
+ dolfin/fem/DofMapBuilder.h
+Copyright: 2008-2011, Anders Logg
+ 2008-2011, Ola Skavhaug
+License: LGPL-3+
+
+Files: dolfin/adaptivity/adapt.cpp
+ dolfin/adaptivity/adapt.h
+Copyright: 2010-2011, Anders Logg
+ 2010-2011, Marie Rognes
+ 2010-2011, Garth N. Wells
+License: LGPL-3+
+
Files: dolfin/la/CholmodCholeskySolver.cpp
dolfin/la/CholmodCholeskySolver.h
-Copyright: 2008, Dag Lindbo
- 2008, Garth N. Wells
+Copyright: 2008-2011, Dag Lindbo
+ 2008-2011, Garth N. Wells
License: LGPL-3+
Files: utils/matlab/xmlmatrix.m
@@ -429,6 +398,19 @@
2009, Anders Logg
License: LGPL-3+
+Files: dolfin/io/GenericFile.cpp
+ dolfin/io/GenericFile.h
+Copyright: 2002-2011, Johan Hoffman
+ 2002-2011, Anders Logg
+License: LGPL-3+
+
+Files: dolfin/io/File.cpp
+ dolfin/io/File.h
+Copyright: 2002-2011, Johan Hoffman
+ 2002-2011, Anders Logg
+ 2002-2011, Garth N. Wells
+License: LGPL-3+
+
Files: bench/plot.py
test/unit/meshconvert/cpp/test.cpp
Copyright: 2009-2010, Johannes Ring
@@ -445,19 +427,74 @@
Copyright: 2008, Kristoffer Selim
License: LGPL-3+
+Files: dolfin/common/MPI.cpp
+ test/unit/io/cpp/test.cpp
+Copyright: 2007, Magnus Vikstrøm
+License: LGPL-3+
+
+Files: demo/undocumented/special-functions/python/demo_special_functions.py
+ test/system/ufl-jit-assemble-chain/assembly_derivatives.py
+Copyright: 2010-2011, Martin S. Alnaes
+License: LGPL-3+
+
+Files: dolfin/io/pugixml.cpp
+ dolfin/io/pugiconfig.hpp
+ dolfin/io/pugixml.hpp
+Copyright: 2006-2010 Arseny Kapoulkine <arseny.kapoulkine at gmail.com>
+License:
+ Permission is hereby granted, free of charge, to any person
+ obtaining a copy of this software and associated documentation
+ files (the "Software"), to deal in the Software without
+ restriction, including without limitation the rights to use,
+ copy, modify, merge, publish, distribute, sublicense, and/or sell
+ copies of the Software, and to permit persons to whom the
+ Software is furnished to do so, subject to the following
+ conditions:
+ .
+ The above copyright notice and this permission notice shall be
+ included in all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+ EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
+ OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+ NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
+ HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
+ WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+ FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
+ OTHER DEALINGS IN THE SOFTWARE.
+
Files: utils/matlab/plotslab.m
Copyright: 2003, Johan Hoffman
2003-2005, Anders Logg
License: LGPL-3+
+Files: site-packages/dolfin_utils/meshconvert.py
+Copyright: 2006, Anders Logg
+License: LGPL-3+
+
Files: demo/undocumented/dg-poisson/cpp/main.cpp
-Copyright: 2006-2008, Anders Logg
- 2006-2008, Kristian B. Oelgaard
+Copyright: 2006-2011, Anders Logg
+ 2006-2011, Kristian B. Oelgaard
+License: LGPL-3+
+
+Files: site-packages/dolfin_utils/documentation/generatecpprst.py
+Copyright: 2010, Anders Logg
+ 2010, Kristian Oelgaard
License: LGPL-3+
Files: demo/undocumented/assembly/cpp/main.cpp
Copyright: 2008, Anders Logg
2008, Magnus Vikstrøm
+License: LGPL-3+
+
+Files: site-packages/dolfin_utils/documentation/indextemplates.py
+Copyright: 2011, Anders Logg
+ 2011, Kristian Oelgaard
+ 2011, Marie E. Rognes
+License: LGPL-3+
+
+Files: test/unit/intersection/cpp/test.cpp
+Copyright: 2011, Andre Massing
License: LGPL-3+
Files: bench/fem/assembly/cpp/main.cpp
@@ -470,18 +507,17 @@
Copyright: 2004, Erik Svensson
License: LGPL-3+
-Files: demo/undocumented/courtemanche/cpp/main.cpp
-Copyright: 2006-2009, Glenn Terje Lines
- 2006-2009, Ola Skavhaug
- 2006-2009, Simula Research Laboratory
-License: LGPL-3+
-
Files: site-packages/dolfin/common/donothing.py
Copyright: 2009, Hans Petter Langtangen
License: LGPL-3+
+Files: test/unit/book/python/chapter_1.py
+Copyright: 2011, Hans Petter Langtangen
+ 2011, Anders Logg
+License: LGPL-3+
+
Files: demo/pde/hyperelasticity/cpp/HyperElasticity.ufl
-Copyright: 2009-2010, Garth N. Wells
+Copyright: 2009-2010, Harish Narayanan
2009-2010, Garth N. Wells
License: LGPL-3+
@@ -489,7 +525,7 @@
Copyright: 2009, Harish Narayanyan
License: LGPL-3+
-Files: site-packages/dolfin/common/plot.py
+Files: site-packages/dolfin/common/plotting.py
Copyright: 2008, Joachim B. Haga
License: LGPL-3+
@@ -498,15 +534,20 @@
2008-2010, Garth N. Wells
License: LGPL-3+
+Files: demo/undocumented/elasticity/cpp/main.cpp
+Copyright: 2006-2009, Johan Jansson
+ 2006-2009, Anders Logg
+License: LGPL-3+
+
Files: demo/undocumented/dg-poisson/cpp/Poisson.ufl
Copyright: 2006-2007, Kristian B. Oelgaard
2006-2007, Anders Logg
License: LGPL-3+
Files: demo/undocumented/dg-advection-diffusion/cpp/main.cpp
-Copyright: 2007-2008, Kristian B. Oelgaard
- 2007-2008, Anders Logg
- 2007-2008, Garth N. Wells
+Copyright: 2007-2011, Kristian B. Oelgaard
+ 2007-2011, Anders Logg
+ 2007-2011, Garth N. Wells
License: LGPL-3+
Files: demo/pde/biharmonic/cpp/Biharmonic.ufl
@@ -515,36 +556,66 @@
2009, Anders Logg
License: LGPL-3+
+Files: dolfin/common/MPI.h
+Copyright: 2007-2011, Magnus Vikstrøm
+ 2007-2011, Garth N. Wells
+License: LGPL-3+
+
Files: demo/undocumented/auto-adaptive-poisson/python/demo_auto-adaptive-poisson.py
Copyright: 2011, Marie E. Rognes
2011, Anders Logg
License: LGPL-3+
-Files: dolfin/common/mpiutils.h
-Copyright: 2008-2009, Niclas Jansson
- 2008-2009, Anders Logg
- 2008-2009, Ola Skavhaug
+Files: test/unit/math/python/test.py
+Copyright: 2011, Martin Alnaes
License: LGPL-3+
Files: dolfin/mesh/UnitSphere.h
Copyright: 2008, Nuno Lopes
License: LGPL-3+
+Files: dolfin/io/XMLParameters.h
+Copyright: 2011, Ola Skavhaug
+ 2011, Anders Logg
+ 2011, Garth N. Wells
+License: LGPL-3+
+
+Files: demo/undocumented/adaptive-poisson/python/demo_adaptive-poisson.py
+Copyright: 2008, Rolv Erlend Bredesen
+License: LGPL-3+
+
Files: dolfin/fem/ufcexp.h
Copyright: 2009, Shawn W. Walker
License: LGPL-3+
-Files: debian/*
-Copyright: 2008-2011, Johannes Ring <johannr at simula.no>
-License: GPL-2+
-
Files: cmake/modules/FindGMP.cmake
Copyright: 2006, Laurent Montel, <montel at kde.org>
-License: BSD-3
+License:
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions
+ are met:
+ .
+ 1. Redistributions of source code must retain the copyright
+ notice, this list of conditions and the following disclaimer.
+ 2. Redistributions in binary form must reproduce the copyright
+ notice, this list of conditions and the following disclaimer in the
+ documentation and/or other materials provided with the distribution.
+ 3. The name of the author may not be used to endorse or promote products
+ derived from this software without specific prior written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR
+ IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
+ IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT,
+ INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
+ NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+ DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+ THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
+ THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
Files: dolfin/io/base64.cpp
- dolfin/io/base64.h
-Copyright: 2004-2008, René Nyffenegger <rene.nyffenegger at adp-gmbh.ch>
+Copyright: 2004-2008, Rene Nyffenegger <rene.nyffenegger at adp-gmbh.ch>
License:
This source code is provided 'as-is', without any express or implied
warranty. In no event will the author be held liable for any damages
@@ -565,38 +636,20 @@
3. This notice may not be removed or altered from any source distribution.
License: LGPL-3+
- This package is free software; you can redistribute it and/or modify
+ This software is free software; you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation; either version 3 of the
License, or (at your option) any later version.
.
- This package is distributed in the hope that it will be useful, but
+ This software is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
.
You should have received a copy of the GNU Lesser General Public
- License along with this package. If not, see
+ License along with this software. If not, see
<http://www.gnu.org/licenses/>.
.
On Debian systems the full text of the GNU Lesser General Public
License, version 3 can be found in the file
'/usr/share/common-licenses/LGPL-3'.
-
-License: GPL-2+
- This package is free software; you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation; either version 2 of the License, or (at
- your option) any later version.
- .
- This package is distributed in the hope that it will be useful, but
- WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
- General Public License for more details.
- .
- You should have received a copy of the GNU General Public License
- along with this package. If not, see <http://www.gnu.org/licenses/>.
- .
- On Debian systems the full text of the GNU General Public License,
- version 2 can be found in the file
- '/usr/share/common-licenses/GPL-2'.
Modified: packages/fenics/dolfin/trunk/debian/copyright_hints
URL: http://svn.debian.org/wsvn/debian-science/packages/fenics/dolfin/trunk/debian/copyright_hints?rev=44047&op=diff
==============================================================================
--- packages/fenics/dolfin/trunk/debian/copyright_hints (original)
+++ packages/fenics/dolfin/trunk/debian/copyright_hints Tue Nov 22 11:10:50 2011
@@ -3,452 +3,6 @@
Upstream-Contact: FIXME
Source: FIXME
Disclaimer: Autogenerated by CDBS
-
-Files: bench/bench.py
- bench/common/progress/cpp/main.cpp
- bench/common/timing/cpp/main.cpp
- bench/fem/assembly/cpp/forms.h
- bench/fem/convergence/cpp/forms/Poisson2D_1.ufl
- bench/fem/convergence/cpp/forms/Poisson2D_2.ufl
- bench/fem/convergence/cpp/forms/Poisson2D_3.ufl
- bench/fem/convergence/cpp/forms/Poisson2D_4.ufl
- bench/fem/convergence/cpp/forms/Poisson2D_5.ufl
- bench/fem/convergence/cpp/forms/Poisson3D_1.ufl
- bench/fem/convergence/cpp/forms/Poisson3D_2.ufl
- bench/fem/convergence/cpp/forms/Poisson3D_3.ufl
- bench/fem/convergence/cpp/forms/Poisson3D_4.ufl
- bench/fem/convergence/cpp/forms/Poisson3D_5.ufl
- bench/fem/convergence/cpp/main.cpp
- bench/fem/jit/python/bench
- bench/fem/multicore/cpp/main.cpp
- bench/fem/speedup/cpp/Poisson.ufl
- bench/fem/speedup/cpp/analyse-bench
- bench/fem/speedup/cpp/assemble-poisson.cpp
- bench/fem/speedup/cpp/bench
- bench/fem/speedup/cpp/solve-poisson.cpp
- bench/la/vector/access/cpp/main.cpp
- bench/mesh/iteration/cpp/main.cpp
- bench/mesh/refinement/cpp/main.cpp
- bench/mesh/topology/cpp/main.cpp
- bench/mesh/unitcube/cpp/main.cpp
- cmake/scripts/generate-form-files
- demo/la/eigenvalue/cpp/StiffnessMatrix.ufl
- demo/pde/navier-stokes/cpp/PressureUpdate.ufl
- demo/pde/navier-stokes/cpp/TentativeVelocity.ufl
- demo/pde/navier-stokes/cpp/VelocityUpdate.ufl
- demo/pde/navier-stokes/cpp/main.cpp
- demo/pde/navier-stokes/python/demo_navier-stokes.py
- demo/pde/poisson/cpp/Poisson.ufl
- demo/pde/poisson/cpp/main.cpp
- demo/pde/poisson/python/demo_poisson.py
- demo/undocumented/advection-diffusion/cpp/AdvectionDiffusion.ufl
- demo/undocumented/advection-diffusion/cpp/main.cpp
- demo/undocumented/aliev-panfilov/cpp/main.cpp
- demo/undocumented/assembly/cpp/ReactionDiffusion.ufl
- demo/undocumented/bcs/cpp/Poisson.ufl
- demo/undocumented/bcs/cpp/main.cpp
- demo/undocumented/bcs/python/demo_bcs.py
- demo/undocumented/block-matrix/cpp/StiffnessMatrix.ufl
- demo/undocumented/collection/cpp/main.cpp
- demo/undocumented/complex/cpp/main.cpp
- demo/undocumented/elementplot/python/demo_elementplot.py
- demo/undocumented/equality/cpp/Poisson.ufl
- demo/undocumented/equality/cpp/main.cpp
- demo/undocumented/eval/cpp/Projection.ufl
- demo/undocumented/eval/cpp/main.cpp
- demo/undocumented/eval/python/demo_eval.py
- demo/undocumented/extrapolation/cpp/main.cpp
- demo/undocumented/extrapolation/python/demo_extrapolation.py
- demo/undocumented/functional/cpp/EnergyNorm.ufl
- demo/undocumented/functional/cpp/main.cpp
- demo/undocumented/harmonic/cpp/main.cpp
- demo/undocumented/interpolation/python/demo_interpolation.py
- demo/undocumented/lift-drag/cpp/Drag.ufl
- demo/undocumented/lift-drag/cpp/Lift.ufl
- demo/undocumented/lift-drag/cpp/main.cpp
- demo/undocumented/lorenz/cpp/main.cpp
- demo/undocumented/method-weights/cpp/main.cpp
- demo/undocumented/neumann-poisson/cpp/Poisson.ufl
- demo/undocumented/optimization/python/demo_optimization.py
- demo/undocumented/periodic/cpp/Poisson.ufl
- demo/undocumented/periodic/cpp/main.cpp
- demo/undocumented/plot/cpp/main.cpp
- demo/undocumented/plot/python/demo_plot.py
- demo/undocumented/projection-interpolation/python/demo_projection-interpolation.py
- demo/undocumented/quadrature/cpp/main.cpp
- demo/undocumented/reaction-diffusion/cpp/ReactionDiffusion.ufl
- demo/undocumented/reaction-diffusion/cpp/main.cpp
- demo/undocumented/reaction-diffusion/python/demo_reaction-diffusion.py
- demo/undocumented/reaction/cpp/main.cpp
- demo/undocumented/refinement/cpp/main.cpp
- demo/undocumented/refinement/python/demo_refinement.py
- demo/undocumented/simple/cpp/MassMatrix3D.ufl
- demo/undocumented/simple/cpp/StiffnessMatrix3D.ufl
- demo/undocumented/smoothing/python/demo_smoothing.py
- demo/undocumented/stiff/cpp/TestProblem1.h
- demo/undocumented/stiff/cpp/TestProblem2.h
- demo/undocumented/stiff/cpp/TestProblem3.h
- demo/undocumented/stiff/cpp/TestProblem4.h
- demo/undocumented/stiff/cpp/TestProblem5.h
- demo/undocumented/stiff/cpp/TestProblem6.h
- demo/undocumented/stiff/cpp/TestProblem7.h
- demo/undocumented/stiff/cpp/TestProblem9.h
- demo/undocumented/stiff/cpp/main.cpp
- demo/undocumented/stokes-iterative/cpp/Stokes.ufl
- demo/undocumented/stokes-stabilized/cpp/Stokes.ufl
- demo/undocumented/stokes-stabilized/cpp/main.cpp
- demo/undocumented/stokes-taylor-hood/cpp/Stokes.ufl
- demo/undocumented/stokes-taylor-hood/cpp/main.cpp
- demo/undocumented/subdomains/cpp/main.cpp
- demo/undocumented/submesh/cpp/main.cpp
- demo/undocumented/submesh/python/demo_submesh.py
- demo/undocumented/sym-dirichlet-bc/cpp/Poisson.ufl
- demo/undocumented/sym-dirichlet-bc/cpp/main.cpp
- demo/undocumented/tensor-weighted-poisson/python/demo_tensor-weighted-poisson.py
- demo/undocumented/tensor-weighted-poisson/python/generate_data.py
- demo/undocumented/time-series/cpp/main.cpp
- demo/undocumented/time-series/python/demo_time-series.py
- dolfin/adaptivity/Extrapolation.cpp
- dolfin/adaptivity/Extrapolation.h
- dolfin/adaptivity/TimeSeries.cpp
- dolfin/adaptivity/TimeSeries.h
- dolfin/ale/HarmonicSmoothing.cpp
- dolfin/ale/HarmonicSmoothing.h
- dolfin/ale/Poisson1D.ufl
- dolfin/ale/Poisson2D.ufl
- dolfin/ale/Poisson3D.ufl
- dolfin/common/Hierarchical.h
- dolfin/common/IndexSet.h
- dolfin/common/Timer.h
- dolfin/common/Variable.cpp
- dolfin/common/Variable.h
- dolfin/common/constants.h
- dolfin/common/dolfin_doc.h
- dolfin/common/init.cpp
- dolfin/common/init.h
- dolfin/common/real.h
- dolfin/common/timing.cpp
- dolfin/common/timing.h
- dolfin/common/types.h
- dolfin/common/unittest.h
- dolfin/common/utils.cpp
- dolfin/common/utils.h
- dolfin/fem/Assembler.cpp
- dolfin/fem/Assembler.h
- dolfin/fem/AssemblerTools.cpp
- dolfin/fem/AssemblerTools.h
- dolfin/fem/BasisFunction.h
- dolfin/fem/BoundaryCondition.cpp
- dolfin/fem/BoundaryCondition.h
- dolfin/fem/DomainAssigner.cpp
- dolfin/fem/DomainAssigner.h
- dolfin/fem/FiniteElement.cpp
- dolfin/fem/Form.h
- dolfin/fem/OpenMpAssembler.h
- dolfin/fem/PeriodicBC.cpp
- dolfin/fem/PeriodicBC.h
- dolfin/fem/PointSource.cpp
- dolfin/fem/PointSource.h
- dolfin/fem/UFC.cpp
- dolfin/fem/UFC.h
- dolfin/fem/UFCCell.h
- dolfin/fem/UFCMesh.h
- dolfin/fem/assemble.cpp
- dolfin/fem/assemble.h
- dolfin/function/CoefficientAssigner.cpp
- dolfin/function/CoefficientAssigner.h
- dolfin/function/Constant.cpp
- dolfin/function/Constant.h
- dolfin/function/Expression.cpp
- dolfin/function/Expression.h
- dolfin/function/Function.cpp
- dolfin/function/Function.h
- dolfin/function/FunctionSpace.cpp
- dolfin/function/FunctionSpace.h
- dolfin/function/GenericFunction.cpp
- dolfin/function/GenericFunction.h
- dolfin/function/SpecialFunctions.cpp
- dolfin/function/SpecialFunctions.h
- dolfin/function/SubSpace.cpp
- dolfin/function/SubSpace.h
- dolfin/io/BinaryFile.cpp
- dolfin/io/BinaryFile.h
- dolfin/io/XMLObject.cpp
- dolfin/io/XMLObject.h
- dolfin/la/DefaultFactory.cpp
- dolfin/la/DefaultFactory.h
- dolfin/la/GenericLinearSolver.cpp
- dolfin/la/GenericMatrix.cpp
- dolfin/la/GenericTensor.h
- dolfin/la/LinearSolver.cpp
- dolfin/la/PETScBaseMatrix.h
- dolfin/la/PETScLUSolver.cpp
- dolfin/la/PETScLUSolver.h
- dolfin/la/STLMatrix.cpp
- dolfin/la/STLMatrix.h
- dolfin/la/Scalar.h
- dolfin/la/SingularSolver.cpp
- dolfin/la/SingularSolver.h
- dolfin/la/solve.cpp
- dolfin/la/solve.h
- dolfin/la/uBLASDummyPreconditioner.cpp
- dolfin/la/uBLASDummyPreconditioner.h
- dolfin/la/uBLASKrylovMatrix.cpp
- dolfin/la/uBLASKrylovMatrix.h
- dolfin/log/Event.cpp
- dolfin/log/Event.h
- dolfin/log/LogManager.cpp
- dolfin/log/LogManager.h
- dolfin/log/LogStream.cpp
- dolfin/log/LogStream.h
- dolfin/log/Logger.cpp
- dolfin/log/Logger.h
- dolfin/log/Progress.cpp
- dolfin/log/Table.cpp
- dolfin/log/Table.h
- dolfin/log/log.cpp
- dolfin/math/Lagrange.cpp
- dolfin/math/Lagrange.h
- dolfin/math/Legendre.cpp
- dolfin/math/Legendre.h
- dolfin/math/basic.cpp
- dolfin/math/basic.h
- dolfin/mesh/BoundaryComputation.cpp
- dolfin/mesh/BoundaryComputation.h
- dolfin/mesh/BoundaryMesh.cpp
- dolfin/mesh/BoundaryMesh.h
- dolfin/mesh/Box.cpp
- dolfin/mesh/Box.h
- dolfin/mesh/Cell.h
- dolfin/mesh/CellType.cpp
- dolfin/mesh/CellType.h
- dolfin/mesh/DomainBoundary.h
- dolfin/mesh/DynamicMeshEditor.cpp
- dolfin/mesh/DynamicMeshEditor.h
- dolfin/mesh/Edge.cpp
- dolfin/mesh/Edge.h
- dolfin/mesh/Face.cpp
- dolfin/mesh/Face.h
- dolfin/mesh/Facet.cpp
- dolfin/mesh/Facet.h
- dolfin/mesh/FacetCell.cpp
- dolfin/mesh/FacetCell.h
- dolfin/mesh/IntervalCell.cpp
- dolfin/mesh/IntervalCell.h
- dolfin/mesh/Mesh.cpp
- dolfin/mesh/Mesh.h
- dolfin/mesh/MeshConnectivity.cpp
- dolfin/mesh/MeshConnectivity.h
- dolfin/mesh/MeshData.cpp
- dolfin/mesh/MeshData.h
- dolfin/mesh/MeshEditor.cpp
- dolfin/mesh/MeshEditor.h
- dolfin/mesh/MeshEntity.cpp
- dolfin/mesh/MeshEntity.h
- dolfin/mesh/MeshEntityIterator.h
- dolfin/mesh/MeshFunction.h
- dolfin/mesh/MeshGeometry.cpp
- dolfin/mesh/MeshGeometry.h
- dolfin/mesh/MeshOrdering.cpp
- dolfin/mesh/MeshOrdering.h
- dolfin/mesh/MeshRenumbering.cpp
- dolfin/mesh/MeshRenumbering.h
- dolfin/mesh/MeshSmoothing.cpp
- dolfin/mesh/MeshSmoothing.h
- dolfin/mesh/MeshTopology.cpp
- dolfin/mesh/MeshTopology.h
- dolfin/mesh/Point.cpp
- dolfin/mesh/Point.h
- dolfin/mesh/Rectangle.cpp
- dolfin/mesh/Rectangle.h
- dolfin/mesh/SubDomain.cpp
- dolfin/mesh/SubDomain.h
- dolfin/mesh/SubMesh.cpp
- dolfin/mesh/SubMesh.h
- dolfin/mesh/SubsetIterator.h
- dolfin/mesh/TetrahedronCell.cpp
- dolfin/mesh/TetrahedronCell.h
- dolfin/mesh/TopologyComputation.cpp
- dolfin/mesh/TopologyComputation.h
- dolfin/mesh/TriangleCell.cpp
- dolfin/mesh/TriangleCell.h
- dolfin/mesh/UnitCircle.cpp
- dolfin/mesh/UnitCircle.h
- dolfin/mesh/UnitCube.cpp
- dolfin/mesh/UnitCube.h
- dolfin/mesh/UnitSphere.cpp
- dolfin/mesh/UnitSquare.cpp
- dolfin/mesh/UnitSquare.h
- dolfin/mesh/UnitTetrahedron.cpp
- dolfin/mesh/UnitTetrahedron.h
- dolfin/mesh/UnitTriangle.cpp
- dolfin/mesh/UnitTriangle.h
- dolfin/mesh/Vertex.h
- dolfin/ode/Adaptivity.cpp
- dolfin/ode/Adaptivity.h
- dolfin/ode/Alloc.cpp
- dolfin/ode/Alloc.h
- dolfin/ode/ComplexODE.cpp
- dolfin/ode/ComplexODE.h
- dolfin/ode/Controller.cpp
- dolfin/ode/Controller.h
- dolfin/ode/Dependencies.cpp
- dolfin/ode/Dependencies.h
- dolfin/ode/Dual.cpp
- dolfin/ode/Dual.h
- dolfin/ode/Method.cpp
- dolfin/ode/Method.h
- dolfin/ode/MonoAdaptiveFixedPointSolver.cpp
- dolfin/ode/MonoAdaptiveFixedPointSolver.h
- dolfin/ode/MonoAdaptiveJacobian.cpp
- dolfin/ode/MonoAdaptiveJacobian.h
- dolfin/ode/MonoAdaptiveNewtonSolver.cpp
- dolfin/ode/MonoAdaptiveNewtonSolver.h
- dolfin/ode/MonoAdaptiveTimeSlab.cpp
- dolfin/ode/MonoAdaptiveTimeSlab.h
- dolfin/ode/MonoAdaptivity.cpp
- dolfin/ode/MonoAdaptivity.h
- dolfin/ode/MultiAdaptiveFixedPointSolver.cpp
- dolfin/ode/MultiAdaptiveFixedPointSolver.h
- dolfin/ode/MultiAdaptiveJacobian.cpp
- dolfin/ode/MultiAdaptiveJacobian.h
- dolfin/ode/MultiAdaptiveNewtonSolver.cpp
- dolfin/ode/MultiAdaptiveNewtonSolver.h
- dolfin/ode/MultiAdaptivePreconditioner.cpp
- dolfin/ode/MultiAdaptivePreconditioner.h
- dolfin/ode/MultiAdaptiveTimeSlab.cpp
- dolfin/ode/MultiAdaptiveTimeSlab.h
- dolfin/ode/MultiAdaptivity.cpp
- dolfin/ode/MultiAdaptivity.h
- dolfin/ode/Sample.cpp
- dolfin/ode/Sample.h
- dolfin/ode/TimeSlab.cpp
- dolfin/ode/TimeSlab.h
- dolfin/ode/TimeSlabJacobian.cpp
- dolfin/ode/TimeSlabJacobian.h
- dolfin/ode/TimeSlabSolver.cpp
- dolfin/ode/TimeSlabSolver.h
- dolfin/ode/UpdatedMultiAdaptiveJacobian.cpp
- dolfin/ode/UpdatedMultiAdaptiveJacobian.h
- dolfin/ode/cGqMethod.cpp
- dolfin/ode/cGqMethod.h
- dolfin/ode/dGqMethod.cpp
- dolfin/ode/dGqMethod.h
- dolfin/parameter/GlobalParameters.cpp
- dolfin/parameter/GlobalParameters.h
- dolfin/parameter/Parameter.cpp
- dolfin/parameter/Parameter.h
- dolfin/parameter/Parameters.cpp
- dolfin/parameter/Parameters.h
- dolfin/plot/FunctionPlotData.cpp
- dolfin/plot/FunctionPlotData.h
- dolfin/plot/plot.cpp
- dolfin/plot/plot.h
- dolfin/quadrature/GaussQuadrature.cpp
- dolfin/quadrature/GaussQuadrature.h
- dolfin/quadrature/GaussianQuadrature.cpp
- dolfin/quadrature/GaussianQuadrature.h
- dolfin/quadrature/LobattoQuadrature.cpp
- dolfin/quadrature/LobattoQuadrature.h
- dolfin/quadrature/Quadrature.cpp
- dolfin/quadrature/Quadrature.h
- dolfin/quadrature/RadauQuadrature.cpp
- dolfin/quadrature/RadauQuadrature.h
- dolfin/refinement/LocalMeshRefinement.cpp
- dolfin/refinement/LocalMeshRefinement.h
- dolfin/refinement/RegularCutRefinement.cpp
- dolfin/refinement/RegularCutRefinement.h
- dolfin/refinement/UniformMeshRefinement.cpp
- dolfin/refinement/UniformMeshRefinement.h
- dolfin/swig/fem_pre.i
- dolfin/swig/function_pre.i
- dolfin/swig/generate.py
- dolfin/swig/mesh_post.i
- dolfin/swig/mesh_pre.i
- dolfin/swig/typemaps.i
- scripts/dolfin-convert/dolfin-convert
- scripts/dolfin-order/dolfin-order
- scripts/dolfin-plot/dolfin-plot
- site-packages/dolfin/common/globalparameters.py.in
- site-packages/dolfin/common/memory.py
- site-packages/dolfin/fem/assemble.py
- site-packages/dolfin/fem/bcs.py
- site-packages/dolfin/fem/errornorm.py
- site-packages/dolfin/fem/interpolate.py
- site-packages/dolfin/fem/norm.py
- site-packages/dolfin/fem/project.py
- site-packages/dolfin/fem/variationalproblem.py
- site-packages/dolfin/functions/constant.py
- site-packages/dolfin/functions/specialfunctions.py
- site-packages/dolfin/mesh/ale.py
- site-packages/dolfin/mesh/refine.py
- site-packages/dolfin_utils/commands.py
- site-packages/dolfin_utils/documentation/docstringutils.py
- site-packages/dolfin_utils/documentation/extractdocumentation.py
- test/system/parallel-assembly-solve/solver.py
- test/system/parallel-assembly-solve/test.py
- test/system/test.py
- test/test.py
- test/unit/function/cpp/Projection.ufl
- test/unit/function/cpp/test.cpp
- test/unit/function/python/test.py
- test/unit/io/python/test.py
- test/unit/jit/python/test.py
- test/unit/mesh/cpp/test.cpp
- test/unit/mesh/python/test.py
- test/unit/parameter/cpp/test.cpp
- test/unit/parameter/python/test.py
- test/unit/python-extras/python/test.py
- test/unit/test.py
- utils/matlab/meshindex.m
- utils/matlab/plotcontroller.m
- utils/python/extract2d
- utils/scripts/formatcode
- utils/system/monitor
- utils/tetgen/dolfin-tetgen
- utils/xml/convertall
-Copyright: 2002-2006, Anders Logg
- 2002-2008, Anders Logg
- 2003-2005, Anders Logg
- 2003-2006, Anders Logg
- 2003-2007, Anders Logg
- 2003-2008, Anders Logg
- 2003-2009, Anders Logg
- 2003-2010, Anders Logg
- 2003-2011, Anders Logg
- 2004-2005, Anders Logg
- 2004-2006, Anders Logg
- 2004-2007, Anders Logg
- 2004-2008, Anders Logg
- 2005, Anders Logg
- 2005-2006, Anders Logg
- 2005-2007, Anders Logg
- 2005-2008, Anders Logg
- 2005-2009, Anders Logg
- 2005-2010, Anders Logg
- 2005-2011, Anders Logg
- 2006, Anders Logg
- 2006-2007, Anders Logg
- 2006-2008, Anders Logg
- 2006-2009, Anders Logg
- 2006-2010, Anders Logg
- 2006-2011, Anders Logg
- 2007, Anders Logg
- 2007-2008, Anders Logg
- 2007-2009, Anders Logg
- 2007-2010, Anders Logg
- 2007-2011, Anders Logg
- 2008, Anders Logg
- 2008-2009, Anders Logg
- 2008-2010, Anders Logg
- 2008-2011, Anders Logg
- 2009, Anders Logg
- 2009-2010, Anders Logg
- 2009-2011, Anders Logg
- 2010, Anders Logg
- 2011, Anders Logg
-License: LGPL-3+
- FIXME
Files: AUTHORS
CMakeLists.txt
@@ -520,12 +74,12 @@
cmake/modules/FindParMETIS.cmake
cmake/modules/FindSLEPc.cmake
cmake/modules/FindScotchPT.cmake
- cmake/modules/FindTrilinos.cmake
- cmake/modules/FindUFC.cmake
+ cmake/modules/FindSphinx.cmake
cmake/modules/FindUMFPACK.cmake
cmake/modules/ResolveCompilerPaths.cmake
cmake/post-install/CMakeLists.txt
cmake/templates/cmake_uninstall.cmake.in
+ cmake/templates/dolfin-config-version.cmake.in
cmake/templates/dolfin-config.cmake.in
cmake/templates/dolfin-version.in
cmake/templates/dolfin.conf.in
@@ -551,40 +105,65 @@
debian/compat
debian/control
debian/dolfin-bin.install
+ debian/dolfin-dev.lintian-overrides
debian/dolfin-doc.install
- debian/libdolfin0-dev.install
- debian/libdolfin0.install
- debian/patches/build.patch
- debian/patches/series
+ debian/libdolfin1.0-dev.install
+ debian/libdolfin1.0.install
debian/python-dolfin.install
debian/rules
debian/source/format
debian/watch
demo/CMakeLists.txt
demo/cmake.local
+ demo/la/eigenvalue/common.txt
demo/la/eigenvalue/cpp/CMakeLists.txt
demo/la/eigenvalue/cpp/StiffnessMatrix.h
demo/la/eigenvalue/cpp/box_with_dent.xml.gz
demo/la/eigenvalue/python/box_with_dent.xml.gz
+ demo/la/eigenvalue/python/documentation.rst
+ demo/pde/biharmonic/common.txt
demo/pde/biharmonic/cpp/Biharmonic.h
demo/pde/biharmonic/cpp/CMakeLists.txt
+ demo/pde/biharmonic/cpp/documentation.rst
+ demo/pde/biharmonic/python/documentation.rst
+ demo/pde/cahn-hilliard/common.txt
demo/pde/cahn-hilliard/cpp/CMakeLists.txt
demo/pde/cahn-hilliard/cpp/CahnHilliard2D.cpp
demo/pde/cahn-hilliard/cpp/CahnHilliard2D.h
demo/pde/cahn-hilliard/cpp/CahnHilliard3D.cpp
demo/pde/cahn-hilliard/cpp/CahnHilliard3D.h
+ demo/pde/cahn-hilliard/cpp/documentation.rst
+ demo/pde/cahn-hilliard/python/documentation.rst
+ demo/pde/hyperelasticity/common.txt
demo/pde/hyperelasticity/cpp/CMakeLists.txt
demo/pde/hyperelasticity/cpp/HyperElasticity.h
+ demo/pde/hyperelasticity/cpp/documentation.rst
+ demo/pde/hyperelasticity/python/documentation.rst
+ demo/pde/mixed-poisson/common.txt
demo/pde/mixed-poisson/cpp/CMakeLists.txt
demo/pde/mixed-poisson/cpp/MixedPoisson.h
+ demo/pde/mixed-poisson/cpp/documentation.rst
+ demo/pde/mixed-poisson/python/documentation.rst
+ demo/pde/navier-stokes/common.txt
demo/pde/navier-stokes/cpp/CMakeLists.txt
demo/pde/navier-stokes/cpp/PressureUpdate.h
demo/pde/navier-stokes/cpp/TentativeVelocity.h
demo/pde/navier-stokes/cpp/VelocityUpdate.h
- demo/pde/navier-stokes/cpp/lshape.xml.gz
- demo/pde/navier-stokes/python/lshape.xml.gz
+ demo/pde/navier-stokes/cpp/documentation.rst
+ demo/pde/navier-stokes/python/documentation.rst
+ demo/pde/poisson/common.txt
demo/pde/poisson/cpp/CMakeLists.txt
demo/pde/poisson/cpp/Poisson.h
+ demo/pde/poisson/cpp/documentation.rst
+ demo/pde/poisson/python/documentation.rst
+ demo/pde/stokes-iterative/common.txt
+ demo/pde/stokes-iterative/cpp/CMakeLists.txt
+ demo/pde/stokes-iterative/cpp/Stokes.h
+ demo/pde/stokes-iterative/cpp/StokesPreconditioner.h
+ demo/pde/stokes-iterative/python/documentation.rst
+ demo/pde/subdomains-poisson/common.txt
+ demo/pde/subdomains-poisson/cpp/README
+ demo/pde/subdomains-poisson/python/documentation.rst
demo/undocumented/adaptive-poisson/cpp/CMakeLists.txt
demo/undocumented/adaptive-poisson/cpp/README
demo/undocumented/advection-diffusion/cpp/AdvectionDiffusion.h
@@ -592,9 +171,6 @@
demo/undocumented/advection-diffusion/cpp/Velocity.h
demo/undocumented/advection-diffusion/subdomains.xml.gz
demo/undocumented/ale/cpp/CMakeLists.txt
- demo/undocumented/aliev-panfilov/cpp/CMakeLists.txt
- demo/undocumented/aliev-panfilov/cpp/plot.py
- demo/undocumented/aliev-panfilov/python/plot.py
demo/undocumented/assembly/cpp/CMakeLists.txt
demo/undocumented/assembly/cpp/ReactionDiffusion.h
demo/undocumented/assembly/python/README
@@ -609,15 +185,9 @@
demo/undocumented/block-matrix/cpp/CMakeLists.txt
demo/undocumented/block-matrix/cpp/StiffnessMatrix.h
demo/undocumented/built-in/cpp/CMakeLists.txt
- demo/undocumented/collection/cpp/CMakeLists.txt
- demo/undocumented/collection/cpp/plot.py
demo/undocumented/coloring/cpp/CMakeLists.txt
- demo/undocumented/complex/cpp/CMakeLists.txt
- demo/undocumented/complex/cpp/plot.py
demo/undocumented/conditional/cpp/CMakeLists.txt
demo/undocumented/conditional/cpp/Conditional.h
- demo/undocumented/courtemanche/cpp/CMakeLists.txt
- demo/undocumented/courtemanche/cpp/plot.py
demo/undocumented/curl-curl/cpp/CMakeLists.txt
demo/undocumented/curl-curl/cpp/CurrentDensity.h
demo/undocumented/curl-curl/cpp/EddyCurrents.h
@@ -638,9 +208,6 @@
demo/undocumented/elastodynamics/cpp/DG0_eps_xx.h
demo/undocumented/elastodynamics/cpp/ElastoDynamics.h
demo/undocumented/entityintersection/cpp/CMakeLists.txt
- demo/undocumented/equality/cpp/CMakeLists.txt
- demo/undocumented/equality/cpp/Poisson.h
- demo/undocumented/equality/python/README
demo/undocumented/eval/cpp/CMakeLists.txt
demo/undocumented/eval/cpp/Projection.h
demo/undocumented/extrapolation/cpp/CMakeLists.txt
@@ -650,18 +217,12 @@
demo/undocumented/extrapolation/cpp/P2.ufl
demo/undocumented/functional/cpp/CMakeLists.txt
demo/undocumented/functional/cpp/EnergyNorm.h
- demo/undocumented/harmonic/cpp/CMakeLists.txt
- demo/undocumented/harmonic/cpp/plot.py
- demo/undocumented/harmonic/cpp/plot_dual.py
demo/undocumented/interpolation/cpp/CMakeLists.txt
demo/undocumented/interpolation/cpp/README
demo/undocumented/lift-drag/cpp/CMakeLists.txt
demo/undocumented/lift-drag/cpp/Drag.h
demo/undocumented/lift-drag/cpp/Lift.h
demo/undocumented/lift-drag/cpp/Pressure.h
- demo/undocumented/lorenz/cpp/CMakeLists.txt
- demo/undocumented/lorenz/cpp/plot.py
- demo/undocumented/lorenz/cpp/stabilityfactors.py
demo/undocumented/meshfunction-refinement/cpp/CMakeLists.txt
demo/undocumented/meshfunction/cpp/CMakeLists.txt
demo/undocumented/meshfunction/cpp/plot.py
@@ -671,7 +232,6 @@
demo/undocumented/meshintersection/2D/python/rotator.xml.gz
demo/undocumented/meshintersection/3D/cpp/CMakeLists.txt
demo/undocumented/meshintersection/3D/cpp/README
- demo/undocumented/method-weights/cpp/CMakeLists.txt
demo/undocumented/neumann-poisson/cpp/CMakeLists.txt
demo/undocumented/neumann-poisson/cpp/Poisson.h
demo/undocumented/nonlinear-poisson/cpp/CMakeLists.txt
@@ -686,10 +246,6 @@
demo/undocumented/parameters/cpp/CMakeLists.txt
demo/undocumented/parameters/cpp/parameters.xml
demo/undocumented/parameters/python/parameters.xml
- demo/undocumented/partitioning/cpp/CMakeLists.txt
- demo/undocumented/partitioning/cpp/plotpartitions
- demo/undocumented/partitioning/cpp/unitsquare.xml.gz
- demo/undocumented/partitioning/python/unitsquare.xml.gz
demo/undocumented/periodic/cpp/CMakeLists.txt
demo/undocumented/periodic/cpp/Poisson.h
demo/undocumented/plot/cpp/CMakeLists.txt
@@ -700,26 +256,13 @@
demo/undocumented/quadrature/cpp/CMakeLists.txt
demo/undocumented/reaction-diffusion/cpp/CMakeLists.txt
demo/undocumented/reaction-diffusion/cpp/ReactionDiffusion.h
- demo/undocumented/reaction-diffusion/python/short.py
- demo/undocumented/reaction/cpp/CMakeLists.txt
- demo/undocumented/reaction/cpp/plot.py
demo/undocumented/refinement/cpp/CMakeLists.txt
demo/undocumented/restriction/cpp/CMakeLists.txt
demo/undocumented/restriction/cpp/README
- demo/undocumented/simple/cpp/CMakeLists.txt
- demo/undocumented/simple/cpp/MassMatrix3D.h
- demo/undocumented/simple/cpp/StiffnessMatrix3D.h
- demo/undocumented/simple/tetrahedron.xml.gz
demo/undocumented/smoothing/cpp/CMakeLists.txt
demo/undocumented/smoothing/cpp/README
demo/undocumented/spatial-coordinates/cpp/CMakeLists.txt
demo/undocumented/spatial-coordinates/cpp/SpatialCoordinates.h
- demo/undocumented/stiff/cpp/CMakeLists.txt
- demo/undocumented/stiff/cpp/plot.py
- demo/undocumented/stiff/cpp/run-tests.sh
- demo/undocumented/stokes-iterative/cpp/CMakeLists.txt
- demo/undocumented/stokes-iterative/cpp/Stokes.h
- demo/undocumented/stokes-iterative/cpp/StokesPreconditioner.h
demo/undocumented/stokes-mini/subdomains.xml.gz
demo/undocumented/stokes-stabilized/cpp/CMakeLists.txt
demo/undocumented/stokes-stabilized/cpp/Stokes.h
@@ -736,14 +279,19 @@
demo/undocumented/tensor-weighted-poisson/cpp/CMakeLists.txt
demo/undocumented/tensor-weighted-poisson/cpp/README
demo/undocumented/tensor-weighted-poisson/python/c00.xml.gz
+ demo/undocumented/tensor-weighted-poisson/python/c01.xml.gz
demo/undocumented/tensor-weighted-poisson/python/c11.xml.gz
demo/undocumented/time-series/cpp/CMakeLists.txt
demo/undocumented/waveguide/cpp/CMakeLists.txt
demo/undocumented/waveguide/cpp/Forms.h
+ doc/CMakeLists.txt
+ doc/README
doc/man/man1/dolfin-convert.1.gz
doc/man/man1/dolfin-order.1.gz
doc/man/man1/dolfin-plot.1.gz
doc/man/man1/dolfin-version.1.gz
+ doc/sphinx-common/Makefile
+ doc/sphinx-common/README
dolfin/CMakeLists.txt
dolfin/adaptivity/dolfin_adaptivity.h
dolfin/ale/Poisson1D.h
@@ -755,23 +303,22 @@
dolfin/fem/dolfin_fem.h
dolfin/function/dolfin_function.h
dolfin/graph/dolfin_graph.h
+ dolfin/intersection/dolfin_intersection.h
dolfin/io/base64.h
dolfin/io/dolfin_io.h
dolfin/la/dolfin_la.h
dolfin/la/mtl4.h
dolfin/log/LogLevel.h
+ dolfin/log/README
dolfin/log/dolfin_log.h
dolfin/math/dolfin_math.h
dolfin/mesh/dolfin_mesh.h
dolfin/nls/dolfin_nls.h
- dolfin/ode/README
- dolfin/ode/dolfin_ode.h
dolfin/parameter/dolfin_parameter.h
dolfin/plot/dolfin_plot.h
dolfin/quadrature/dolfin_quadrature.h
dolfin/refinement/dolfin_refinement.h
dolfin/swig/CMakeLists.txt
- dolfin/swig/common_post.i
dolfin/swig/docstringgenerator.py
dolfin/swig/docstrings.i
dolfin/swig/import/adaptivity.i
@@ -780,6 +327,7 @@
dolfin/swig/import/fem.i
dolfin/swig/import/function.i
dolfin/swig/import/graph.i
+ dolfin/swig/import/intersection.i
dolfin/swig/import/io.i
dolfin/swig/import/la.i
dolfin/swig/import/log.i
@@ -790,6 +338,7 @@
dolfin/swig/import/parameter.i
dolfin/swig/import/plot.i
dolfin/swig/import/quadrature.i
+ dolfin/swig/import/refinement.i
dolfin/swig/io_post.i
dolfin/swig/kernel_modules.i
dolfin/swig/la_post.i
@@ -810,9 +359,9 @@
site-packages/dolfin/common/constants.py
site-packages/dolfin/common/math.py
site-packages/dolfin/compilemodules/__init__.py
+ site-packages/dolfin/compilemodules/sharedptrclasses.py
site-packages/dolfin/cppimports.py
site-packages/dolfin/fem/__init__.py
- site-packages/dolfin/fem/formmanipulations.py
site-packages/dolfin/functions/__init__.py
site-packages/dolfin/functions/ufc_functionspace.py
site-packages/dolfin/importhandler/__init__.py
@@ -824,17 +373,62 @@
site-packages/dolfin_utils/wrappers/includes.py
test/CMakeLists.txt
test/README
+ test/documentation/README
test/memory/dolfin_valgrind.supp
test/regression/README
+ test/unit/armadillo/cpp/CMakeLists.txt
+ test/unit/book/README
+ test/unit/book/python/chapter_1_files/dolfin_parameters.xml
+ test/unit/book/python/chapter_1_files/stationary/nonlinear_poisson/alg_newton_np.py
+ test/unit/book/python/chapter_1_files/stationary/nonlinear_poisson/pde_newton_np.py
+ test/unit/book/python/chapter_1_files/stationary/nonlinear_poisson/picard_np.py
+ test/unit/book/python/chapter_1_files/stationary/nonlinear_poisson/vp1_np.py
+ test/unit/book/python/chapter_1_files/stationary/nonlinear_poisson/vp2_np.py
+ test/unit/book/python/chapter_1_files/stationary/poisson/d1_p2D.py
+ test/unit/book/python/chapter_1_files/stationary/poisson/d2_p2D.py
+ test/unit/book/python/chapter_1_files/stationary/poisson/d3_p2D.py
+ test/unit/book/python/chapter_1_files/stationary/poisson/d4_p2D.py
+ test/unit/book/python/chapter_1_files/stationary/poisson/d5_p2D.py
+ test/unit/book/python/chapter_1_files/stationary/poisson/d6_p2D.py
+ test/unit/book/python/chapter_1_files/stationary/poisson/dn1_p2D.py
+ test/unit/book/python/chapter_1_files/stationary/poisson/dn2_p2D.py
+ test/unit/book/python/chapter_1_files/stationary/poisson/dn3_p2D.py
+ test/unit/book/python/chapter_1_files/stationary/poisson/dn4_p2D.py
+ test/unit/book/python/chapter_1_files/stationary/poisson/dnr_p2D.py
+ test/unit/book/python/chapter_1_files/stationary/poisson/mat2_p2D.py
+ test/unit/book/python/chapter_1_files/stationary/poisson/mat2x_p2D.py
+ test/unit/book/python/chapter_1_files/stationary/poisson/membrane1.py
+ test/unit/book/python/chapter_1_files/stationary/poisson/membrane1v.py
+ test/unit/book/python/chapter_1_files/stationary/poisson/paD.py
+ test/unit/book/python/chapter_1_files/stationary/poisson/vcp2D.py
+ test/unit/book/python/chapter_1_files/transient/diffusion/d1_d2D.py
+ test/unit/book/python/chapter_1_files/transient/diffusion/d2_d2D.py
+ test/unit/book/python/chapter_1_files/transient/diffusion/demo_sin_daD.sh
+ test/unit/book/python/chapter_1_files/transient/diffusion/sin_daD.py
+ test/unit/book/python/mesh.xml
test/unit/fem/cpp/CMakeLists.txt
+ test/unit/fem/python/tetrahedron.xml.gz
test/unit/function/cpp/CMakeLists.txt
test/unit/function/cpp/Projection.h
+ test/unit/intersection/cpp/CMakeLists.txt
test/unit/io/cpp/CMakeLists.txt
+ test/unit/io/cpp/xml_value_collection_ref.xml
+ test/unit/io/python/xml_value_collection_ref.xml
test/unit/la/cpp/CMakeLists.txt
test/unit/mesh/cpp/CMakeLists.txt
test/unit/meshconvert/cpp/CMakeLists.txt
test/unit/meshconvert/python/data/abaqus.inp
test/unit/meshconvert/python/data/gmsh.msh
+ test/unit/meshconvert/python/data/gmsh_test_facet_regions_2D_1.geo
+ test/unit/meshconvert/python/data/gmsh_test_facet_regions_2D_1.msh
+ test/unit/meshconvert/python/data/gmsh_test_facet_regions_2D_2.geo
+ test/unit/meshconvert/python/data/gmsh_test_facet_regions_2D_2.msh
+ test/unit/meshconvert/python/data/gmsh_test_facet_regions_2D_3.geo
+ test/unit/meshconvert/python/data/gmsh_test_facet_regions_2D_3.msh
+ test/unit/meshconvert/python/data/gmsh_test_facet_regions_2D_4.geo
+ test/unit/meshconvert/python/data/gmsh_test_facet_regions_2D_4.msh
+ test/unit/meshconvert/python/data/gmsh_test_facet_regions_3D_1.geo
+ test/unit/meshconvert/python/data/gmsh_test_facet_regions_3D_1.msh
test/unit/meshconvert/python/test.py
test/unit/parameter/cpp/CMakeLists.txt
test/unit/quadrature/cpp/CMakeLists.txt
@@ -854,6 +448,394 @@
License: UNKNOWN
FIXME
+Files: bench/bench.py
+ bench/common/progress/cpp/main.cpp
+ bench/common/timing/cpp/main.cpp
+ bench/fem/assembly/cpp/forms.h
+ bench/fem/convergence/cpp/forms/Poisson2D_1.ufl
+ bench/fem/convergence/cpp/forms/Poisson2D_2.ufl
+ bench/fem/convergence/cpp/forms/Poisson2D_3.ufl
+ bench/fem/convergence/cpp/forms/Poisson2D_4.ufl
+ bench/fem/convergence/cpp/forms/Poisson2D_5.ufl
+ bench/fem/convergence/cpp/forms/Poisson3D_1.ufl
+ bench/fem/convergence/cpp/forms/Poisson3D_2.ufl
+ bench/fem/convergence/cpp/forms/Poisson3D_3.ufl
+ bench/fem/convergence/cpp/forms/Poisson3D_4.ufl
+ bench/fem/convergence/cpp/forms/Poisson3D_5.ufl
+ bench/fem/convergence/cpp/main.cpp
+ bench/fem/jit/python/bench
+ bench/fem/multicore/cpp/main.cpp
+ bench/fem/speedup/cpp/Poisson.ufl
+ bench/fem/speedup/cpp/analyse-bench
+ bench/fem/speedup/cpp/assemble-poisson.cpp
+ bench/fem/speedup/cpp/bench
+ bench/fem/speedup/cpp/solve-poisson.cpp
+ bench/la/vector/access/cpp/main.cpp
+ bench/mesh/iteration/cpp/main.cpp
+ bench/mesh/refinement/cpp/main.cpp
+ bench/mesh/topology/cpp/main.cpp
+ bench/mesh/unitcube/cpp/main.cpp
+ cmake/scripts/generate-form-files
+ demo/la/eigenvalue/cpp/StiffnessMatrix.ufl
+ demo/pde/navier-stokes/cpp/PressureUpdate.ufl
+ demo/pde/navier-stokes/cpp/TentativeVelocity.ufl
+ demo/pde/navier-stokes/cpp/VelocityUpdate.ufl
+ demo/pde/navier-stokes/cpp/main.cpp
+ demo/pde/navier-stokes/python/demo_navier-stokes.py
+ demo/pde/poisson/cpp/Poisson.ufl
+ demo/pde/poisson/cpp/main.cpp
+ demo/pde/poisson/python/demo_poisson.py
+ demo/pde/stokes-iterative/cpp/Stokes.ufl
+ demo/undocumented/advection-diffusion/cpp/AdvectionDiffusion.ufl
+ demo/undocumented/advection-diffusion/cpp/main.cpp
+ demo/undocumented/assembly/cpp/ReactionDiffusion.ufl
+ demo/undocumented/bcs/cpp/Poisson.ufl
+ demo/undocumented/bcs/cpp/main.cpp
+ demo/undocumented/bcs/python/demo_bcs.py
+ demo/undocumented/block-matrix/cpp/StiffnessMatrix.ufl
+ demo/undocumented/elementplot/python/demo_elementplot.py
+ demo/undocumented/eval/cpp/Projection.ufl
+ demo/undocumented/eval/cpp/main.cpp
+ demo/undocumented/eval/python/demo_eval.py
+ demo/undocumented/extrapolation/cpp/main.cpp
+ demo/undocumented/extrapolation/python/demo_extrapolation.py
+ demo/undocumented/functional/cpp/EnergyNorm.ufl
+ demo/undocumented/functional/cpp/main.cpp
+ demo/undocumented/interpolation/python/demo_interpolation.py
+ demo/undocumented/lift-drag/cpp/Drag.ufl
+ demo/undocumented/lift-drag/cpp/Lift.ufl
+ demo/undocumented/lift-drag/cpp/main.cpp
+ demo/undocumented/neumann-poisson/cpp/Poisson.ufl
+ demo/undocumented/optimization/python/demo_optimization.py
+ demo/undocumented/periodic/cpp/Poisson.ufl
+ demo/undocumented/periodic/cpp/main.cpp
+ demo/undocumented/plot/cpp/main.cpp
+ demo/undocumented/plot/python/demo_plot.py
+ demo/undocumented/projection-interpolation/python/demo_projection-interpolation.py
+ demo/undocumented/quadrature/cpp/main.cpp
+ demo/undocumented/reaction-diffusion/cpp/ReactionDiffusion.ufl
+ demo/undocumented/reaction-diffusion/cpp/main.cpp
+ demo/undocumented/reaction-diffusion/python/demo_reaction-diffusion.py
+ demo/undocumented/refinement/cpp/main.cpp
+ demo/undocumented/refinement/python/demo_refinement.py
+ demo/undocumented/smoothing/python/demo_smoothing.py
+ demo/undocumented/stokes-stabilized/cpp/Stokes.ufl
+ demo/undocumented/stokes-stabilized/cpp/main.cpp
+ demo/undocumented/stokes-taylor-hood/cpp/Stokes.ufl
+ demo/undocumented/stokes-taylor-hood/cpp/main.cpp
+ demo/undocumented/subdomains/cpp/main.cpp
+ demo/undocumented/submesh/cpp/main.cpp
+ demo/undocumented/submesh/python/demo_submesh.py
+ demo/undocumented/sym-dirichlet-bc/cpp/Poisson.ufl
+ demo/undocumented/sym-dirichlet-bc/cpp/main.cpp
+ demo/undocumented/tensor-weighted-poisson/python/demo_tensor-weighted-poisson.py
+ demo/undocumented/tensor-weighted-poisson/python/generate_data.py
+ demo/undocumented/time-series/cpp/main.cpp
+ demo/undocumented/time-series/python/demo_time-series.py
+ dolfin/adaptivity/Extrapolation.cpp
+ dolfin/adaptivity/Extrapolation.h
+ dolfin/adaptivity/TimeSeries.cpp
+ dolfin/adaptivity/TimeSeries.h
+ dolfin/ale/HarmonicSmoothing.cpp
+ dolfin/ale/HarmonicSmoothing.h
+ dolfin/ale/Poisson1D.ufl
+ dolfin/ale/Poisson2D.ufl
+ dolfin/ale/Poisson3D.ufl
+ dolfin/common/Hierarchical.h
+ dolfin/common/IndexSet.h
+ dolfin/common/Timer.h
+ dolfin/common/Variable.cpp
+ dolfin/common/Variable.h
+ dolfin/common/constants.h
+ dolfin/common/dolfin_doc.h
+ dolfin/common/init.cpp
+ dolfin/common/init.h
+ dolfin/common/timing.cpp
+ dolfin/common/timing.h
+ dolfin/common/types.h
+ dolfin/common/unittest.h
+ dolfin/common/utils.cpp
+ dolfin/common/utils.h
+ dolfin/fem/Assembler.cpp
+ dolfin/fem/Assembler.h
+ dolfin/fem/AssemblerTools.cpp
+ dolfin/fem/AssemblerTools.h
+ dolfin/fem/BasisFunction.h
+ dolfin/fem/BoundaryCondition.cpp
+ dolfin/fem/BoundaryCondition.h
+ dolfin/fem/DomainAssigner.cpp
+ dolfin/fem/DomainAssigner.h
+ dolfin/fem/Equation.cpp
+ dolfin/fem/Equation.h
+ dolfin/fem/FiniteElement.cpp
+ dolfin/fem/Form.h
+ dolfin/fem/LinearVariationalProblem.cpp
+ dolfin/fem/LinearVariationalProblem.h
+ dolfin/fem/NonlinearVariationalProblem.cpp
+ dolfin/fem/NonlinearVariationalProblem.h
+ dolfin/fem/OpenMpAssembler.h
+ dolfin/fem/PeriodicBC.cpp
+ dolfin/fem/PeriodicBC.h
+ dolfin/fem/PointSource.cpp
+ dolfin/fem/PointSource.h
+ dolfin/fem/UFC.cpp
+ dolfin/fem/UFC.h
+ dolfin/fem/UFCCell.h
+ dolfin/fem/UFCMesh.h
+ dolfin/fem/assemble.cpp
+ dolfin/fem/assemble.h
+ dolfin/fem/solve.cpp
+ dolfin/fem/solve.h
+ dolfin/function/CoefficientAssigner.cpp
+ dolfin/function/CoefficientAssigner.h
+ dolfin/function/Constant.cpp
+ dolfin/function/Constant.h
+ dolfin/function/Expression.cpp
+ dolfin/function/Expression.h
+ dolfin/function/Function.cpp
+ dolfin/function/Function.h
+ dolfin/function/FunctionSpace.cpp
+ dolfin/function/FunctionSpace.h
+ dolfin/function/GenericFunction.cpp
+ dolfin/function/GenericFunction.h
+ dolfin/function/SpecialFunctions.cpp
+ dolfin/function/SpecialFunctions.h
+ dolfin/function/SubSpace.cpp
+ dolfin/function/SubSpace.h
+ dolfin/io/BinaryFile.cpp
+ dolfin/io/BinaryFile.h
+ dolfin/io/XMLMeshValueCollection.h
+ dolfin/io/xmlutils.cpp
+ dolfin/io/xmlutils.h
+ dolfin/la/DefaultFactory.cpp
+ dolfin/la/DefaultFactory.h
+ dolfin/la/GenericMatrix.cpp
+ dolfin/la/GenericTensor.h
+ dolfin/la/LinearSolver.cpp
+ dolfin/la/PETScBaseMatrix.h
+ dolfin/la/PETScLUSolver.cpp
+ dolfin/la/PETScLUSolver.h
+ dolfin/la/STLMatrix.cpp
+ dolfin/la/STLMatrix.h
+ dolfin/la/Scalar.h
+ dolfin/la/SingularSolver.cpp
+ dolfin/la/SingularSolver.h
+ dolfin/la/solve.cpp
+ dolfin/la/solve.h
+ dolfin/la/uBLASDummyPreconditioner.cpp
+ dolfin/la/uBLASDummyPreconditioner.h
+ dolfin/la/uBLASKrylovMatrix.cpp
+ dolfin/la/uBLASKrylovMatrix.h
+ dolfin/log/Event.cpp
+ dolfin/log/Event.h
+ dolfin/log/LogManager.cpp
+ dolfin/log/LogManager.h
+ dolfin/log/LogStream.cpp
+ dolfin/log/LogStream.h
+ dolfin/log/Logger.cpp
+ dolfin/log/Logger.h
+ dolfin/log/Progress.cpp
+ dolfin/log/Table.cpp
+ dolfin/log/Table.h
+ dolfin/log/log.cpp
+ dolfin/math/Lagrange.cpp
+ dolfin/math/Lagrange.h
+ dolfin/math/Legendre.cpp
+ dolfin/math/basic.cpp
+ dolfin/math/basic.h
+ dolfin/mesh/BoundaryComputation.cpp
+ dolfin/mesh/BoundaryComputation.h
+ dolfin/mesh/BoundaryMesh.cpp
+ dolfin/mesh/BoundaryMesh.h
+ dolfin/mesh/Box.cpp
+ dolfin/mesh/Box.h
+ dolfin/mesh/Cell.h
+ dolfin/mesh/CellType.cpp
+ dolfin/mesh/CellType.h
+ dolfin/mesh/DomainBoundary.h
+ dolfin/mesh/DynamicMeshEditor.cpp
+ dolfin/mesh/DynamicMeshEditor.h
+ dolfin/mesh/Edge.cpp
+ dolfin/mesh/Edge.h
+ dolfin/mesh/Face.cpp
+ dolfin/mesh/Face.h
+ dolfin/mesh/Facet.cpp
+ dolfin/mesh/Facet.h
+ dolfin/mesh/FacetCell.cpp
+ dolfin/mesh/FacetCell.h
+ dolfin/mesh/IntervalCell.cpp
+ dolfin/mesh/IntervalCell.h
+ dolfin/mesh/Mesh.cpp
+ dolfin/mesh/Mesh.h
+ dolfin/mesh/MeshConnectivity.cpp
+ dolfin/mesh/MeshConnectivity.h
+ dolfin/mesh/MeshData.cpp
+ dolfin/mesh/MeshData.h
+ dolfin/mesh/MeshDomains.cpp
+ dolfin/mesh/MeshDomains.h
+ dolfin/mesh/MeshEditor.cpp
+ dolfin/mesh/MeshEditor.h
+ dolfin/mesh/MeshEntity.cpp
+ dolfin/mesh/MeshEntity.h
+ dolfin/mesh/MeshEntityIterator.h
+ dolfin/mesh/MeshFunction.h
+ dolfin/mesh/MeshGeometry.cpp
+ dolfin/mesh/MeshGeometry.h
+ dolfin/mesh/MeshOrdering.cpp
+ dolfin/mesh/MeshOrdering.h
+ dolfin/mesh/MeshRenumbering.cpp
+ dolfin/mesh/MeshRenumbering.h
+ dolfin/mesh/MeshSmoothing.cpp
+ dolfin/mesh/MeshSmoothing.h
+ dolfin/mesh/MeshTopology.cpp
+ dolfin/mesh/MeshTopology.h
+ dolfin/mesh/Point.cpp
+ dolfin/mesh/Point.h
+ dolfin/mesh/Rectangle.cpp
+ dolfin/mesh/Rectangle.h
+ dolfin/mesh/SubDomain.cpp
+ dolfin/mesh/SubDomain.h
+ dolfin/mesh/SubMesh.cpp
+ dolfin/mesh/SubMesh.h
+ dolfin/mesh/SubsetIterator.h
+ dolfin/mesh/TetrahedronCell.cpp
+ dolfin/mesh/TetrahedronCell.h
+ dolfin/mesh/TopologyComputation.cpp
+ dolfin/mesh/TopologyComputation.h
+ dolfin/mesh/TriangleCell.cpp
+ dolfin/mesh/TriangleCell.h
+ dolfin/mesh/UnitCircle.cpp
+ dolfin/mesh/UnitCircle.h
+ dolfin/mesh/UnitCube.cpp
+ dolfin/mesh/UnitCube.h
+ dolfin/mesh/UnitSphere.cpp
+ dolfin/mesh/UnitSquare.cpp
+ dolfin/mesh/UnitSquare.h
+ dolfin/mesh/UnitTetrahedron.cpp
+ dolfin/mesh/UnitTetrahedron.h
+ dolfin/mesh/UnitTriangle.cpp
+ dolfin/mesh/UnitTriangle.h
+ dolfin/mesh/Vertex.h
+ dolfin/parameter/GlobalParameters.cpp
+ dolfin/parameter/GlobalParameters.h
+ dolfin/parameter/Parameter.cpp
+ dolfin/parameter/Parameter.h
+ dolfin/parameter/Parameters.cpp
+ dolfin/parameter/Parameters.h
+ dolfin/plot/FunctionPlotData.cpp
+ dolfin/plot/FunctionPlotData.h
+ dolfin/plot/plot.cpp
+ dolfin/plot/plot.h
+ dolfin/quadrature/GaussQuadrature.cpp
+ dolfin/quadrature/GaussQuadrature.h
+ dolfin/quadrature/GaussianQuadrature.cpp
+ dolfin/quadrature/GaussianQuadrature.h
+ dolfin/quadrature/LobattoQuadrature.cpp
+ dolfin/quadrature/LobattoQuadrature.h
+ dolfin/quadrature/Quadrature.cpp
+ dolfin/quadrature/Quadrature.h
+ dolfin/quadrature/RadauQuadrature.cpp
+ dolfin/quadrature/RadauQuadrature.h
+ dolfin/refinement/LocalMeshRefinement.cpp
+ dolfin/refinement/LocalMeshRefinement.h
+ dolfin/refinement/RegularCutRefinement.cpp
+ dolfin/refinement/RegularCutRefinement.h
+ dolfin/refinement/UniformMeshRefinement.cpp
+ dolfin/refinement/UniformMeshRefinement.h
+ dolfin/swig/fem_pre.i
+ dolfin/swig/function_pre.i
+ dolfin/swig/generate.py
+ dolfin/swig/mesh_post.i
+ dolfin/swig/mesh_pre.i
+ dolfin/swig/typemaps.i
+ scripts/dolfin-convert/dolfin-convert
+ scripts/dolfin-order/dolfin-order
+ scripts/dolfin-plot/dolfin-plot
+ site-packages/dolfin/common/globalparameters.py.in
+ site-packages/dolfin/common/memory.py
+ site-packages/dolfin/fem/assembling.py
+ site-packages/dolfin/fem/bcs.py
+ site-packages/dolfin/fem/interpolation.py
+ site-packages/dolfin/fem/norms.py
+ site-packages/dolfin/fem/projection.py
+ site-packages/dolfin/fem/solving.py
+ site-packages/dolfin/fem/variationalproblem.py
+ site-packages/dolfin/functions/constant.py
+ site-packages/dolfin/functions/specialfunctions.py
+ site-packages/dolfin/mesh/ale.py
+ site-packages/dolfin/mesh/refinement.py
+ site-packages/dolfin_utils/commands.py
+ site-packages/dolfin_utils/documentation/docstringutils.py
+ site-packages/dolfin_utils/documentation/extractdocumentation.py
+ test/codingstyle/test.py
+ test/system/parallel-assembly-solve/solver.py
+ test/system/parallel-assembly-solve/test.py
+ test/system/test.py
+ test/test.py
+ test/unit/book/python/chapter_10.py
+ test/unit/fem/python/solving.py
+ test/unit/function/cpp/Projection.ufl
+ test/unit/function/cpp/test.cpp
+ test/unit/function/python/Constant.py
+ test/unit/function/python/Expression.py
+ test/unit/io/python/XMLMeshValueCollection.py
+ test/unit/io/python/test.py
+ test/unit/jit/python/test.py
+ test/unit/mesh/cpp/test.cpp
+ test/unit/mesh/python/MeshData.py
+ test/unit/mesh/python/MeshEditor.py
+ test/unit/mesh/python/MeshIterator.py
+ test/unit/mesh/python/MeshMarkers.py
+ test/unit/mesh/python/test.py
+ test/unit/parameter/cpp/test.cpp
+ test/unit/parameter/python/test.py
+ test/unit/python-extras/python/test.py
+ test/unit/test.py
+ utils/matlab/meshindex.m
+ utils/matlab/plotcontroller.m
+ utils/python/extract2d
+ utils/scripts/formatcode
+ utils/system/monitor
+ utils/tetgen/dolfin-tetgen
+ utils/xml/convertall
+Copyright: 2003-2005, Anders Logg
+ 2003-2006, Anders Logg
+ 2003-2007, Anders Logg
+ 2003-2008, Anders Logg
+ 2003-2009, Anders Logg
+ 2003-2011, Anders Logg
+ 2004-2005, Anders Logg
+ 2004-2007, Anders Logg
+ 2005, Anders Logg
+ 2005-2006, Anders Logg
+ 2005-2007, Anders Logg
+ 2005-2008, Anders Logg
+ 2005-2009, Anders Logg
+ 2005-2010, Anders Logg
+ 2005-2011, Anders Logg
+ 2006, Anders Logg
+ 2006-2007, Anders Logg
+ 2006-2008, Anders Logg
+ 2006-2009, Anders Logg
+ 2006-2010, Anders Logg
+ 2006-2011, Anders Logg
+ 2007, Anders Logg
+ 2007-2008, Anders Logg
+ 2007-2009, Anders Logg
+ 2007-2011, Anders Logg
+ 2008, Anders Logg
+ 2008-2009, Anders Logg
+ 2008-2010, Anders Logg
+ 2008-2011, Anders Logg
+ 2009, Anders Logg
+ 2009-2010, Anders Logg
+ 2009-2011, Anders Logg
+ 2010, Anders Logg
+ 2010-2011, Anders Logg
+ 2011, Anders Logg
+License: LGPL-3+
+ FIXME
+
Files: bench/function/evaluation/cpp/P1.ufl
bench/la/vector/assignment/cpp/main.cpp
cmake/scripts/generate-cmakefiles
@@ -861,6 +843,9 @@
demo/pde/cahn-hilliard/cpp/CahnHilliard3D.ufl
demo/pde/cahn-hilliard/cpp/main.cpp
demo/pde/cahn-hilliard/python/demo_cahn-hilliard.py
+ demo/pde/stokes-iterative/cpp/StokesPreconditioner.ufl
+ demo/pde/stokes-iterative/cpp/main.cpp
+ demo/pde/stokes-iterative/python/demo_stokes-iterative.py
demo/undocumented/advection-diffusion/cpp/Velocity.ufl
demo/undocumented/built-in/python/demo_built-in.py
demo/undocumented/coloring/cpp/main.cpp
@@ -878,11 +863,6 @@
demo/undocumented/nonmatching-projection/cpp/P3.ufl
demo/undocumented/nonmatching-projection/cpp/main.cpp
demo/undocumented/nonmatching-projection/python/demo_nonmatching-projection.py
- demo/undocumented/stokes-iterative/cpp/StokesPreconditioner.ufl
- demo/undocumented/stokes-iterative/cpp/main.cpp
- demo/undocumented/stokes-iterative/python/demo_stokes-iterative.py
- dolfin/adaptivity/adapt.cpp
- dolfin/adaptivity/adapt.h
dolfin/common/Array.h
dolfin/common/NoDeleter.h
dolfin/common/Set.h
@@ -914,6 +894,18 @@
dolfin/io/VTKFile.h
dolfin/io/VTKWriter.cpp
dolfin/io/VTKWriter.h
+ dolfin/io/XMLArray.h
+ dolfin/io/XMLFile.h
+ dolfin/io/XMLFunctionData.cpp
+ dolfin/io/XMLFunctionData.h
+ dolfin/io/XMLFunctionPlotData.cpp
+ dolfin/io/XMLFunctionPlotData.h
+ dolfin/io/XMLMesh.cpp
+ dolfin/io/XMLMesh.h
+ dolfin/io/XMLMeshFunction.h
+ dolfin/io/XMLParameters.cpp
+ dolfin/io/XMLVector.cpp
+ dolfin/io/XMLVector.h
dolfin/io/XYZFile.cpp
dolfin/io/XYZFile.h
dolfin/la/GenericLUSolver.h
@@ -949,24 +941,37 @@
dolfin/la/uBLASVector.cpp
dolfin/la/uBLASVector.h
dolfin/la/ublas.h
+ dolfin/math/Legendre.h
+ dolfin/mesh/LocalMeshValueCollection.h
dolfin/mesh/MeshColoring.cpp
dolfin/mesh/MeshColoring.h
+ dolfin/mesh/MeshDistributed.cpp
+ dolfin/mesh/MeshDistributed.h
dolfin/nls/NewtonSolver.cpp
dolfin/nls/NewtonSolver.h
dolfin/nls/NonlinearProblem.h
dolfin/refinement/refine.cpp
dolfin/refinement/refine.h
site-packages/dolfin/common/time.py
+ test/unit/armadillo/cpp/test_temporarily_disabled.cpp
test/unit/fem/cpp/test.cpp
- test/unit/fem/python/Assembly.py
+ test/unit/fem/python/Assembler.py
test/unit/fem/python/DirichletBC.py
- test/unit/fem/python/test.py
- test/unit/function/python/function.py
+ test/unit/fem/python/DofMap.py
+ test/unit/fem/python/FiniteElement.py
+ test/unit/fem/python/SystemAssembler.py
+ test/unit/function/python/Function.py
+ test/unit/io/python/XMLMesh.py
+ test/unit/io/python/XMLMeshFunction.py
+ test/unit/io/python/XMLVector.py
+ test/unit/io/python/vtk.py
test/unit/la/python/Matrix.py
+ test/unit/la/python/Scalar.py
test/unit/la/python/Vector.py
test/unit/mesh/python/Edge.py
test/unit/mesh/python/Face.py
test/unit/mesh/python/MeshFunction.py
+ test/unit/refinement/python/refine.py
Copyright: 2005, Garth N. Wells
2005-2007, Garth N. Wells
2005-2008, Garth N. Wells
@@ -979,7 +984,6 @@
2006-2010, Garth N. Wells
2006-2011, Garth N. Wells
2007, Garth N. Wells
- 2007-2008, Garth N. Wells
2007-2009, Garth N. Wells
2007-2010, Garth N. Wells
2007-2011, Garth N. Wells
@@ -988,11 +992,60 @@
2008-2010, Garth N. Wells
2008-2011, Garth N. Wells
2009, Garth N. Wells
- 2009-2010, Garth N. Wells
2009-2011, Garth N. Wells
+ 201 Garth N. Wells
2010, Garth N. Wells
2010-2011, Garth N. Wells
2011, Garth N. Wells
+License: LGPL-3+
+ FIXME
+
+Files: bench/function/extrapolation/python/bench
+ demo/pde/subdomains-poisson/python/demo_subdomains-poisson.py
+ demo/undocumented/auto-adaptive-navier-stokes/cpp/AdaptiveNavierStokes.ufl
+ demo/undocumented/auto-adaptive-navier-stokes/cpp/main.cpp
+ demo/undocumented/auto-adaptive-navier-stokes/python/demo_auto-adaptive-navier-stokes.py
+ demo/undocumented/extrapolation/python/demo2.py
+ demo/undocumented/meshfunction-refinement/cpp/main.cpp
+ demo/undocumented/neumann-poisson/cpp/main.cpp
+ demo/undocumented/neumann-poisson/python/demo_neumann-poisson.py
+ doc/copy_and_split_demo_doc.py
+ doc/generate_api_doc.py
+ doc/generate_main_index.py
+ dolfin/adaptivity/AdaptiveLinearVariationalSolver.cpp
+ dolfin/adaptivity/AdaptiveLinearVariationalSolver.h
+ dolfin/adaptivity/AdaptiveNonlinearVariationalSolver.cpp
+ dolfin/adaptivity/AdaptiveNonlinearVariationalSolver.h
+ dolfin/adaptivity/ErrorControl.cpp
+ dolfin/adaptivity/ErrorControl.h
+ dolfin/adaptivity/GenericAdaptiveVariationalSolver.cpp
+ dolfin/adaptivity/GenericAdaptiveVariationalSolver.h
+ dolfin/adaptivity/GoalFunctional.cpp
+ dolfin/adaptivity/GoalFunctional.h
+ dolfin/adaptivity/LocalAssembler.cpp
+ dolfin/adaptivity/LocalAssembler.h
+ dolfin/adaptivity/SpecialFacetFunction.cpp
+ dolfin/adaptivity/SpecialFacetFunction.h
+ dolfin/adaptivity/adaptivesolve.cpp
+ dolfin/adaptivity/adaptivesolve.h
+ dolfin/adaptivity/marking.cpp
+ dolfin/adaptivity/marking.h
+ dolfin/swig/adaptivity_pre.i
+ site-packages/dolfin/fem/adaptivesolving.py
+ site-packages/dolfin/fem/errorcontrolgenerator.py
+ site-packages/dolfin/fem/formmanipulations.py
+ site-packages/dolfin_utils/wrappers/form.py
+ site-packages/dolfin_utils/wrappers/functionspace.py
+ site-packages/dolfin_utils/wrappers/goalfunctional.py
+ site-packages/dolfin_utils/wrappers/wrappers.py
+ test/documentation/test.py
+ test/system/ufl-jit-assemble-chain/form_operations.py
+ test/system/ufl-jit-assemble-chain/test.py
+ test/unit/adaptivity/python/TimeSeries.py
+ test/unit/adaptivity/python/errorcontrol.py
+Copyright: 2010, Marie E. Rognes
+ 2010-2011, Marie E. Rognes
+ 2011, Marie E. Rognes
License: LGPL-3+
FIXME
@@ -1001,7 +1054,6 @@
demo/pde/biharmonic/python/demo_biharmonic.py
demo/pde/mixed-poisson/python/demo_mixed-poisson.py
demo/undocumented/advection-diffusion/python/demo_advection-diffusion.py
- demo/undocumented/aliev-panfilov/python/demo.py
demo/undocumented/built-in/cpp/main.cpp
demo/undocumented/conditional/cpp/Conditional.ufl
demo/undocumented/conditional/cpp/main.cpp
@@ -1018,7 +1070,6 @@
demo/undocumented/poisson1D/cpp/main.cpp
demo/undocumented/poisson1D/python/demo_poisson1D.py
demo/undocumented/quadrature/python/demo_quadrature.py
- demo/undocumented/simple/python/demo_simple.py
demo/undocumented/spatial-coordinates/cpp/SpatialCoordinates.ufl
demo/undocumented/spatial-coordinates/cpp/main.cpp
demo/undocumented/spatial-coordinates/python/demo_spatial-coordinates.py
@@ -1034,12 +1085,15 @@
dolfin/mesh/UnitInterval.h
dolfin/swig/codeexamples.py
dolfin/swig/documentation.py
+ site-packages/dolfin_utils/documentation/generatepythonrst.py
+ test/documentation/verify_demo_code_snippets.py
Copyright: 2007, Kristian B. Oelgaard
2007-2007, Kristian B. Oelgaard
2007-2008, Kristian B. Oelgaard
2008, Kristian B. Oelgaard
2009, Kristian B. Oelgaard
2010, Kristian B. Oelgaard
+ 2011, Kristian B. Oelgaard
License: LGPL-3+
FIXME
@@ -1048,132 +1102,61 @@
demo/undocumented/entityintersection/cpp/main.cpp
demo/undocumented/entityintersection/python/demo_entityintersection.py
demo/undocumented/meshintersection/3D/python/demo_3D.py
- dolfin/mesh/IntersectionOperator.cpp
- dolfin/mesh/IntersectionOperator.h
- dolfin/mesh/IntersectionOperatorImplementation.h
- dolfin/mesh/MeshPrimitive.h
- dolfin/mesh/Point_3_Bbox_3_intersection.h
- dolfin/mesh/Point_3_Iso_Cuboid_3_intersection.h
- dolfin/mesh/Point_3_Line_3_intersection.h
- dolfin/mesh/Point_3_Point_3_intersection.h
- dolfin/mesh/Point_3_Ray_3_intersection.h
- dolfin/mesh/Point_3_Segment_3_intersection.h
- dolfin/mesh/Point_3_Tetrahedron_3_intersection.h
- dolfin/mesh/Point_3_Triangle_3_intersection.h
- dolfin/mesh/PrimitiveIntersector.cpp
- dolfin/mesh/PrimitiveIntersector.h
- dolfin/mesh/PrimitiveTraits.h
- dolfin/mesh/Segment_3_Segment_3_intersection.h
- dolfin/mesh/Segment_3_Tetrahedron_3_intersection.h
- dolfin/mesh/Tetrahedron_3_Bbox_3_intersection.h
- dolfin/mesh/Tetrahedron_3_Tetrahedron_3_intersection.h
- dolfin/mesh/Tree_Traits.h
- dolfin/mesh/Triangle_3_Tetrahedron_3_do_intersect_SCK.cpp
- dolfin/mesh/Triangle_3_Tetrahedron_3_do_intersect_SCK.h
- dolfin/mesh/added_intersection_3.h
- dolfin/mesh/cgal_includes.h
+ dolfin/intersection/IntersectionOperator.cpp
+ dolfin/intersection/IntersectionOperator.h
+ dolfin/intersection/IntersectionOperatorImplementation.h
+ dolfin/intersection/MeshPrimitive.h
+ dolfin/intersection/Point_3_Bbox_3_intersection.h
+ dolfin/intersection/Point_3_Iso_Cuboid_3_intersection.h
+ dolfin/intersection/Point_3_Line_3_intersection.h
+ dolfin/intersection/Point_3_Point_3_intersection.h
+ dolfin/intersection/Point_3_Ray_3_intersection.h
+ dolfin/intersection/Point_3_Segment_3_intersection.h
+ dolfin/intersection/Point_3_Tetrahedron_3_intersection.h
+ dolfin/intersection/Point_3_Triangle_3_intersection.h
+ dolfin/intersection/PrimitiveIntersector.cpp
+ dolfin/intersection/PrimitiveIntersector.h
+ dolfin/intersection/PrimitiveTraits.h
+ dolfin/intersection/Segment_3_Segment_3_intersection.h
+ dolfin/intersection/Segment_3_Tetrahedron_3_intersection.h
+ dolfin/intersection/Tetrahedron_3_Bbox_3_intersection.h
+ dolfin/intersection/Tetrahedron_3_Tetrahedron_3_intersection.h
+ dolfin/intersection/Tree_Traits.h
+ dolfin/intersection/Triangle_3_Tetrahedron_3_do_intersect_SCK.cpp
+ dolfin/intersection/Triangle_3_Tetrahedron_3_do_intersect_SCK.h
+ dolfin/intersection/added_intersection_3.h
+ dolfin/intersection/cgal_includes.h
dolfin/quadrature/BarycenterQuadrature.cpp
dolfin/quadrature/BarycenterQuadrature.h
dolfin/swig/std_set_typemaps.i
+ test/unit/intersection/python/test.py
test/unit/quadrature/cpp/test.cpp
test/unit/quadrature/python/test.py
Copyright: 2009, Andre Massing
+ 2009-2011, Andre Massing
2010, Andre Massing
-License: LGPL-3+
- FIXME
-
-Files: demo/undocumented/meshfunction/cpp/main.cpp
- dolfin/io/XMLArray.cpp
- dolfin/io/XMLArray.h
- dolfin/io/XMLDolfin.cpp
- dolfin/io/XMLDolfin.h
- dolfin/io/XMLFile.cpp
- dolfin/io/XMLFile.h
- dolfin/io/XMLFunctionPlotData.cpp
- dolfin/io/XMLHandler.cpp
- dolfin/io/XMLHandler.h
- dolfin/io/XMLIndent.cpp
- dolfin/io/XMLIndent.h
- dolfin/io/XMLLocalMeshData.cpp
- dolfin/io/XMLLocalMeshData.h
- dolfin/io/XMLMap.cpp
- dolfin/io/XMLMap.h
- dolfin/io/XMLMeshData.cpp
- dolfin/io/XMLMeshData.h
- dolfin/io/XMLMeshFunction.cpp
- dolfin/io/XMLMeshFunction.h
- dolfin/io/XMLSkipper.cpp
- dolfin/io/XMLSkipper.h
- dolfin/io/XMLVectorMapping.cpp
- dolfin/io/XMLVectorMapping.h
- dolfin/la/GenericSparsityPattern.h
- dolfin/la/LinearAlgebraFactory.h
- dolfin/la/PETScFactory.cpp
- dolfin/la/PETScFactory.h
- dolfin/la/uBLASFactory.h
- dolfin/mesh/LocalMeshData.cpp
- dolfin/mesh/LocalMeshData.h
- dolfin/mesh/MeshFunction.cpp
- dolfin/swig/exceptions.i
- dolfin/swig/numpy_typemaps.i
-Copyright: 2005-2006, Ola Skavhaug
- 2006, Ola Skavhaug
- 2007, Ola Skavhaug
- 2007-2009, Ola Skavhaug
- 2008, Ola Skavhaug
- 2009, Ola Skavhaug
-License: LGPL-3+
- FIXME
-
-Files: bench/function/extrapolation/python/bench
- demo/undocumented/auto-adaptive-navier-stokes/cpp/AdaptiveNavierStokes.ufl
- demo/undocumented/auto-adaptive-navier-stokes/cpp/main.cpp
- demo/undocumented/auto-adaptive-navier-stokes/python/demo_auto-adaptive-navier-stokes.py
- demo/undocumented/extrapolation/python/demo2.py
- demo/undocumented/meshfunction-refinement/cpp/main.cpp
- demo/undocumented/neumann-poisson/cpp/main.cpp
- demo/undocumented/neumann-poisson/python/demo_neumann-poisson.py
- dolfin/adaptivity/AdaptiveDatum.cpp
- dolfin/adaptivity/AdaptiveDatum.h
- dolfin/adaptivity/AdaptiveVariationalSolver.cpp
- dolfin/adaptivity/AdaptiveVariationalSolver.h
- dolfin/adaptivity/ErrorControl.cpp
- dolfin/adaptivity/ErrorControl.h
- dolfin/adaptivity/GoalFunctional.cpp
- dolfin/adaptivity/GoalFunctional.h
- dolfin/adaptivity/LocalAssembler.cpp
- dolfin/adaptivity/LocalAssembler.h
- dolfin/adaptivity/SpecialFacetFunction.cpp
- dolfin/adaptivity/SpecialFacetFunction.h
- dolfin/adaptivity/marking.cpp
- dolfin/adaptivity/marking.h
- dolfin/swig/adaptivity_pre.i
- site-packages/dolfin_utils/wrappers/form.py
- site-packages/dolfin_utils/wrappers/functionspace.py
- site-packages/dolfin_utils/wrappers/goalfunctional.py
- site-packages/dolfin_utils/wrappers/wrappers.py
- test/unit/adaptivity/python/errorcontrol.py
-Copyright: 2010, Marie E. Rognes
- 2011, Marie E. Rognes
+ 2011, Andre Massing
License: LGPL-3+
FIXME
Files: bench/fem/speedup/cpp/submit-bench
demo/undocumented/dg-advection-diffusion/python/demo_dg-advection-diffusion.py
+ dolfin/common/defines.cpp
+ dolfin/common/defines.h
dolfin/swig/Indices.i
dolfin/swig/array_typemaps.i
+ dolfin/swig/common_post.i
dolfin/swig/common_pre.i
- dolfin/swig/defines.i
dolfin/swig/fem_post.i
dolfin/swig/function_post.i
dolfin/swig/la_get_set_items.i
dolfin/swig/log_post.i
dolfin/swig/log_pre.i
dolfin/swig/nls_pre.i
- dolfin/swig/ode_pre.i
dolfin/swig/parameter_post.i
dolfin/swig/parameter_pre.i
dolfin/swig/shared_ptr_classes.i
+ dolfin/swig/std_map_typemaps.i
dolfin/swig/std_pair_typemaps.i
dolfin/swig/std_vector_typemaps.i
dolfin/swig/version.i
@@ -1183,15 +1166,20 @@
site-packages/dolfin/functions/expression.py
site-packages/dolfin/functions/function.py
site-packages/dolfin/functions/functionspace.py
+ site-packages/dolfin_utils/pjobs/sge.py
+ test/unit/function/python/FunctionSpace.py
test/unit/la/cpp/test.cpp
test/unit/la/python/test.py
+ test/unit/mesh/python/MeshValueCollection.py
Copyright: 2005-2006, Johan Hake
2006-2009, Johan Hake
2007, Johan Hake
2007-2009, Johan Hake
2008, Johan Hake
2008-2009, Johan Hake
+ 2008-2011, Johan Hake
2009, Johan Hake
+ 2009-2011, Johan Hake
2011, Johan Hake
License: LGPL-3+
FIXME
@@ -1213,13 +1201,13 @@
dolfin/la/PETScBaseMatrix.cpp
dolfin/la/PETScKrylovMatrix.cpp
dolfin/la/PETScKrylovMatrix.h
+ dolfin/mesh/MeshValueCollection.h
dolfin/mesh/ParallelData.cpp
dolfin/mesh/ParallelData.h
-Copyright: 2004-2009, Anders Logg and Garth N. Wells
+Copyright: 2004-2011, Anders Logg and Garth N. Wells
2005-2006, Anders Logg and Garth N. Wells
2005-2010, Anders Logg and Garth N. Wells
2006-2008, Anders Logg and Garth N. Wells
- 2007-2008, Anders Logg and Garth N. Wells
2007-2010, Anders Logg and Garth N. Wells
2007-2011, Anders Logg and Garth N. Wells
2008-20011 Anders Logg and Garth N. Wells
@@ -1236,22 +1224,18 @@
demo/undocumented/sym-dirichlet-bc/python/dg-demo.py
demo/undocumented/sym-dirichlet-bc/python/dg-speed-up-test.py
demo/undocumented/sym-dirichlet-bc/python/speed-up-test.py
- demo/undocumented/trilinos/python/demo2.py
demo/undocumented/trilinos/python/demo_trilinos.py
dolfin/la/BlockMatrix.cpp
dolfin/la/BlockMatrix.h
dolfin/la/BlockVector.cpp
dolfin/la/BlockVector.h
- dolfin/la/EpetraKrylovSolver.cpp
- dolfin/la/EpetraKrylovSolver.h
site-packages/dolfin/mesh/boundarysubdomainfinder.py
- test/unit/restriction/python/test.py
+ test/unit/fem/python/_old_restriction_test.py
Copyright: 2008, Kent-Andre Mardal
License: LGPL-3+
FIXME
Files: demo/undocumented/elasticity/cpp/Elasticity.ufl
- demo/undocumented/stiff/cpp/TestProblem8.h
dolfin/la/PETScKrylovSolver.cpp
dolfin/la/PETScKrylovSolver.h
dolfin/la/PETScUserPreconditioner.cpp
@@ -1263,8 +1247,7 @@
utils/octave/pdemesh.m
utils/octave/pdeplot.m
utils/octave/pdesurf.m
-Copyright: 2003-2005, Johan Jansson
- 2004-2005, Johan Jansson
+Copyright: 2004-2005, Johan Jansson
2005, Johan Jansson
2005-2006, Johan Jansson
2008, Johan Jansson
@@ -1272,7 +1255,8 @@
License: LGPL-3+
FIXME
-Files: demo/undocumented/advection-diffusion/mesh.xml.gz
+Files: data/meshes/dolfin-2.xml.gz
+ demo/undocumented/advection-diffusion/mesh.xml.gz
demo/undocumented/elastodynamics/cpp/dolfin-2.xml.gz
demo/undocumented/elastodynamics/python/dolfin-2.xml.gz
demo/undocumented/lift-drag/mesh.xml.gz
@@ -1283,41 +1267,27 @@
demo/undocumented/stokes-taylor-hood/python/dolfin-2.xml.gz
demo/undocumented/subdomains/cpp/dolfin-2.xml.gz
demo/undocumented/subdomains/python/dolfin-2.xml.gz
-Copyright: ²þBe
Y@¹r!IeøùI`¥òSŽÉòÚb0r²W‰¸U «³CŠ^jg9kyssc0‰ŠE*™¬íi.Jdälj¹üÙys™é¦^
ç qX‘?3
- Êì¿ÓéŸñCÒJ¾LˆSZÀÐ-vË&
ï)`áº9Ä-ö
-License: UNKNOWN
- FIXME
-
-Files: dolfin/fem/DofMapBuilder.cpp
- dolfin/fem/DofMapBuilder.h
- dolfin/io/XMLFunctionPlotData.h
- dolfin/io/XMLMesh.cpp
- dolfin/io/XMLMesh.h
- dolfin/io/XMLVector.cpp
- dolfin/io/XMLVector.h
- dolfin/ode/ODECollection.cpp
- dolfin/ode/ODECollection.h
-Copyright: 2002-2006, Anders Logg and Ola Skavhaug
- 2003-2007, Anders Logg and Ola Skavhaug
- 2008, Anders Logg and Ola Skavhaug
- 2009, Anders Logg and Ola Skavhaug
-License: LGPL-3+
- FIXME
-
-Files: demo/undocumented/elasticity/cpp/main.cpp
- dolfin/ode/ODE.cpp
- dolfin/ode/ODE.h
- dolfin/ode/ODESolver.cpp
- dolfin/ode/ODESolver.h
- dolfin/ode/Partition.cpp
- dolfin/ode/Partition.h
- dolfin/ode/TimeStepper.cpp
- dolfin/ode/TimeStepper.h
-Copyright: 2003-2009, Johan Jansson and Anders Logg
- 2003-2011, Johan Jansson and Anders Logg
- 2004-2005, Johan Jansson and Anders Logg
- 2004-2008, Johan Jansson and Anders Logg
- 2006-2009, Johan Jansson and Anders Logg
+Copyright: ž9?šµK2`UÀž£hR^#™5ê9÷uK2Y#™5†£4n-‰„5’Yk¹ûƒ»Ë¾‘ÌÚüúÚ'<Þ®î‘QѶÒû– üŒ5fç^î}ë
œt’l˜>{DŒŒµÆÉO¾.U§!'ª[ÆÚNÜ‚À¢O“<FÅ€úæ}žfJf¬Q0 j¿l*.UÝí Ø×”
Þ¥CnÄXO*É0f˜Äù1Vkô¬ÇýË˾
+License: UNKNOWN
+ FIXME
+
+Files: demo/undocumented/meshfunction/cpp/main.cpp
+ dolfin/io/SAX2AttributeParser.h
+ dolfin/la/GenericSparsityPattern.h
+ dolfin/la/LinearAlgebraFactory.h
+ dolfin/la/PETScFactory.cpp
+ dolfin/la/PETScFactory.h
+ dolfin/la/uBLASFactory.h
+ dolfin/mesh/LocalMeshData.cpp
+ dolfin/mesh/LocalMeshData.h
+ dolfin/swig/exceptions.i
+ dolfin/swig/numpy_typemaps.i
+Copyright: 2005-2006, Ola Skavhaug
+ 2006, Ola Skavhaug
+ 2007, Ola Skavhaug
+ 2007-2009, Ola Skavhaug
+ 2008, Ola Skavhaug
+ 2009, Ola Skavhaug
License: LGPL-3+
FIXME
@@ -1345,55 +1315,6 @@
License: LGPL-3+
FIXME
-Files: dolfin/common/real.cpp
- dolfin/la/HighPrecision.cpp
- dolfin/la/HighPrecision.h
- dolfin/ode/ODESolution.cpp
- dolfin/ode/ODESolution.h
- dolfin/ode/StabilityAnalysis.cpp
- dolfin/ode/StabilityAnalysis.h
-Copyright: 2008, Benjamin Kehlet
- 2009, Benjamin Kehlet
- 2011, Benjamin Kehlet
-License: LGPL-3+
- FIXME
-
-Files: demo/undocumented/simple/cpp/main.cpp
- dolfin/io/File.cpp
- dolfin/io/File.h
- dolfin/io/GenericFile.cpp
- dolfin/io/GenericFile.h
- dolfin/io/PythonFile.cpp
- dolfin/io/PythonFile.h
-Copyright: 2002-2008, Johan Hoffman and Anders Logg
- 2002-2009, Johan Hoffman and Anders Logg
- 2003-2005, Johan Hoffman and Anders Logg
- 2003-2008, Johan Hoffman and Anders Logg
-License: LGPL-3+
- FIXME
-
-Files: demo/undocumented/ale/cpp/main.cpp
- demo/undocumented/ale/python/demo_ale.py
- dolfin/ale/ALE.cpp
- dolfin/ale/ALE.h
- dolfin/ale/ALEType.h
- dolfin/ale/TransfiniteInterpolation.cpp
- dolfin/ale/TransfiniteInterpolation.h
-Copyright: 2008, Solveig Bruvoll and Anders Logg
- 2008-2009, Solveig Bruvoll and Anders Logg
-License: LGPL-3+
- FIXME
-
-Files: demo/undocumented/curl-curl/cpp/CurrentDensity.ufl
- demo/undocumented/curl-curl/cpp/EddyCurrents.ufl
- demo/undocumented/curl-curl/cpp/main.cpp
- demo/undocumented/curl-curl/python/demo_curl-curl.py
- dolfin/fem/EqualityBC.cpp
- dolfin/fem/EqualityBC.h
-Copyright: 2009, Bartosz Sawicki
-License: LGPL-3+
- FIXME
-
Files: dolfin/la/MTL4Factory.cpp
dolfin/la/MTL4Factory.h
dolfin/la/MTL4Matrix.cpp
@@ -1404,16 +1325,15 @@
License: LGPL-3+
FIXME
-Files: demo/undocumented/partitioning/cpp/main.cpp
- demo/undocumented/partitioning/python/demo_partitioning.py
- dolfin/io/XMLMatrix.cpp
- dolfin/io/XMLMatrix.h
- dolfin/io/XMLParameters.cpp
- dolfin/io/XMLParameters.h
-Copyright: 2004-2009, Ola Skavhaug and Anders Logg
- 2008, Ola Skavhaug and Anders Logg
- 2009, Ola Skavhaug and Anders Logg
- 2011, Ola Skavhaug and Anders Logg
+Files: dolfin/fem/SystemAssembler.cpp
+ dolfin/fem/SystemAssembler.h
+ dolfin/la/EpetraKrylovSolver.cpp
+ dolfin/la/EpetraKrylovSolver.h
+ dolfin/la/EpetraLUSolver.cpp
+ dolfin/la/EpetraLUSolver.h
+Copyright: 2008-2009, Kent-Andre Mardal and Garth N. Wells
+ 2008-2010, Kent-Andre Mardal and Garth N. Wells
+ 2008-2011, Kent-Andre Mardal and Garth N. Wells
License: LGPL-3+
FIXME
@@ -1427,13 +1347,53 @@
License: LGPL-3+
FIXME
+Files: site-packages/dolfin/compilemodules/expressions.py
+ site-packages/dolfin/compilemodules/subdomains.py
+ site-packages/dolfin_utils/pjobs/pjobs.py
+ site-packages/dolfin_utils/pjobs/torque.py
+ site-packages/dolfin_utils/wrappers/capsules.py
+Copyright: 2008-2008, Martin Sandve Alnes
+ 2008-2009, Martin Sandve Alnes
+ 2009, Martin Sandve Alnes
+License: LGPL-3+
+ FIXME
+
+Files: demo/undocumented/ale/cpp/main.cpp
+ demo/undocumented/ale/python/demo_ale.py
+ dolfin/ale/ALE.cpp
+ dolfin/ale/ALE.h
+ dolfin/ale/ALEType.h
+Copyright: 2008, Solveig Bruvoll and Anders Logg
+ 2008-2009, Solveig Bruvoll and Anders Logg
+ 2008-2011, Solveig Bruvoll and Anders Logg
+License: LGPL-3+
+ FIXME
+
+Files: data/meshes/trimesh-64.xml.gz
+ demo/pde/biharmonic/biharmonic_u.png
+ demo/pde/hyperelasticity/hyperelasticity_u1.png
+ demo/undocumented/plot/cpp/dolfin-2.xml.gz
+ demo/undocumented/plot/python/dolfin-2.xml.gz
+Copyright:
+License: UNKNOWN
+ FIXME
+
Files: demo/pde/mixed-poisson/cpp/MixedPoisson.ufl
demo/pde/mixed-poisson/cpp/main.cpp
demo/undocumented/auto-adaptive-poisson/cpp/AdaptivePoisson.ufl
demo/undocumented/auto-adaptive-poisson/cpp/main.cpp
Copyright: 2006-2010, Anders Logg and Marie E. Rognes
- 2007-2010, Anders Logg and Marie E. Rognes
+ 2007-2011, Anders Logg and Marie E. Rognes
2010, Anders Logg and Marie E. Rognes
+ 2010-2011, Anders Logg and Marie E. Rognes
+License: LGPL-3+
+ FIXME
+
+Files: demo/undocumented/curl-curl/cpp/CurrentDensity.ufl
+ demo/undocumented/curl-curl/cpp/EddyCurrents.ufl
+ demo/undocumented/curl-curl/cpp/main.cpp
+ demo/undocumented/curl-curl/python/demo_curl-curl.py
+Copyright: 2009, Bartosz Sawicki
License: LGPL-3+
FIXME
@@ -1449,29 +1409,10 @@
dolfin/la/PETScMatrix.h
dolfin/la/PETScVector.cpp
dolfin/la/PETScVector.h
-Copyright: 2004-2007, Johan Hoffman, Johan Jansson and Anders Logg
- 2004-2008, Johan Hoffman, Johan Jansson and Anders Logg
+Copyright: 2004-2008, Johan Hoffman, Johan Jansson and Anders Logg
2004-2009, Johan Hoffman, Johan Jansson and Anders Logg
2004-2010, Johan Hoffman, Johan Jansson and Anders Logg
-License: LGPL-3+
- FIXME
-
-Files: dolfin/fem/SystemAssembler.cpp
- dolfin/fem/SystemAssembler.h
- dolfin/la/EpetraLUSolver.cpp
- dolfin/la/EpetraLUSolver.h
-Copyright: 2008-2009, Kent-Andre Mardal and Garth N. Wells
- 2008-2010, Kent-Andre Mardal and Garth N. Wells
-License: LGPL-3+
- FIXME
-
-Files: site-packages/dolfin/compilemodules/expressions.py
- site-packages/dolfin/compilemodules/subdomains.py
- site-packages/dolfin_utils/pjobs/pjobs.py
- site-packages/dolfin_utils/wrappers/capsules.py
-Copyright: 2008-2008, Martin Sandve Alnes
- 2008-2009, Martin Sandve Alnes
- 2009, Martin Sandve Alnes
+ 2004-2011, Johan Hoffman, Johan Jansson and Anders Logg
License: LGPL-3+
FIXME
@@ -1480,13 +1421,17 @@
dolfin/mesh/MeshPartitioning.cpp
dolfin/mesh/MeshPartitioning.h
Copyright: 2008-2009, Niclas Jansson, Ola Skavhaug and Anders Logg
-License: LGPL-3+
- FIXME
-
-Files: dolfin/common/MPI.cpp
- dolfin/common/MPI.h
- test/unit/io/cpp/test.cpp
-Copyright: 2007, Magnus Vikstrøm
+ 2008-2011, Niclas Jansson, Ola Skavhaug and Anders Logg
+License: LGPL-3+
+ FIXME
+
+Files: dolfin/io/XMLFile.cpp
+ dolfin/io/XMLLocalMeshSAX.cpp
+ dolfin/io/XMLLocalMeshSAX.h
+ dolfin/mesh/MeshFunction.cpp
+Copyright: 2006-2011, Ola Skavhaug and Garth N. Wells
+ 2008-2011, Ola Skavhaug and Garth N. Wells
+ 2009-2011, Ola Skavhaug and Garth N. Wells
License: LGPL-3+
FIXME
@@ -1497,11 +1442,11 @@
License: LGPL-3+
FIXME
-Files: demo/undocumented/adaptive-poisson/python/demo_adaptive-poisson.py
- demo/undocumented/lorenz/python/demo.py
- demo/undocumented/lorenz/python/plot.py
-Copyright: 2008, Rolv Erlend Bredesen
-License: LGPL-3+
+Files: data/meshes/gear.xml.gz
+ demo/undocumented/elasticity/cpp/gear.xml.gz
+ demo/undocumented/elasticity/python/gear.xml.gz
+Copyright: ª1QLš˜5üù8.5Õ'
+License: UNKNOWN
FIXME
Files: dolfin/log/Progress.h
@@ -1511,9 +1456,23 @@
License: LGPL-3+
FIXME
+Files: dolfin/fem/DofMapBuilder.cpp
+ dolfin/fem/DofMapBuilder.h
+Copyright: 2008, Anders Logg and Ola Skavhaug
+ 2008-2011, Anders Logg and Ola Skavhaug
+License: LGPL-3+
+ FIXME
+
+Files: dolfin/adaptivity/adapt.cpp
+ dolfin/adaptivity/adapt.h
+Copyright: 2010-2011, Anders Logg, Marie Rognes and Garth N. Wells
+License: LGPL-3+
+ FIXME
+
Files: dolfin/la/CholmodCholeskySolver.cpp
dolfin/la/CholmodCholeskySolver.h
Copyright: 2008, Dag Lindbo and Garth N. Wells
+ 2008-2011, Dag Lindbo and Garth N. Wells
License: LGPL-3+
FIXME
@@ -1526,6 +1485,19 @@
Files: demo/undocumented/parameters/cpp/main.cpp
demo/undocumented/parameters/python/demo_parameters.py
Copyright: 2009, Johan Hake and Anders Logg
+License: LGPL-3+
+ FIXME
+
+Files: dolfin/io/GenericFile.cpp
+ dolfin/io/GenericFile.h
+Copyright: 2002-2011, Johan Hoffman and Anders Logg
+ 2003-2011, Johan Hoffman and Anders Logg
+License: LGPL-3+
+ FIXME
+
+Files: dolfin/io/File.cpp
+ dolfin/io/File.h
+Copyright: 2002-2011, Johan Hoffman, Anders Logg and Garth N. Wells
License: LGPL-3+
FIXME
@@ -1549,22 +1521,31 @@
License: LGPL-3+
FIXME
-Files: demo/undocumented/elasticity/cpp/gear.xml.gz
- demo/undocumented/elasticity/python/gear.xml.gz
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ÊVÕºßþjnfÛûuƒ}£×lõß8.µ@(‹!—G«ZW±·w¦X>$ÿ‚Él»’‡Ï¥)CdƒpçUñ gDUä ŠKµðv¶Œ_«çö+òg2OÆ rûŠüv:i-¦|,݃cùUæ.•"ì\hQìvöÛ_M¸T6xvÕJ²ÁqU†Ö逶¿ÔÂ
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- ½÷îð¸y¯<ׯßí—<y¯c™
¯ ÿ ¨¤ÄuíÅC)ܲèCYðÖÒ4Z
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-License: UNKNOWN
- FIXME
-
-Files: demo/undocumented/bcs/cpp/aneurysm.xml.gz
- demo/undocumented/bcs/python/aneurysm.xml.gz
-Copyright: qïˆä·×µ(
¿KI%¸S‘äÏzièRAýΆÚðø%ÀÚ.\¹~`m`RÄ ,û•í˜–úp¢ïÇŽR/™†ý¦‘—šÞKrðK¨MM\4t«‡ v´ÑÄ58EXª|£Ù¿$Š"\&ZXªÄÕ•ñ1™WPºÔ+¤=2£—¿ 6
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-License: UNKNOWN
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- demo/undocumented/plot/python/dolfin-2.xml.gz
-Copyright: 1yIJ–þ
8¾ðbx)²“8ø•˜mz ¹®D¹X,ø²¨r ‰²ˆgCÔ["?\ð+nwF§
7t_•
+Files: dolfin/common/MPI.cpp
+ test/unit/io/cpp/test.cpp
+Copyright: 2007, Magnus Vikstrøm
+License: LGPL-3+
+ FIXME
+
+Files: demo/undocumented/special-functions/python/demo_special_functions.py
+ test/system/ufl-jit-assemble-chain/assembly_derivatives.py
+Copyright: 2010, Martin S. Alnaes
+ 2011, Martin S. Alnaes
+License: LGPL-3+
+ FIXME
+
+Files: dolfin/io/pugiconfig.hpp
+ dolfin/io/pugixml.hpp
+Copyright: 2003, Kristen Wegner (kristen at tima.net)
+ 2006-2010, Arseny Kapoulkine
+ 2006-2010, Arseny Kapoulkine (arseny.kapoulkine at gmail.com)
+License: MIT/X11 (BSD like)
+ FIXME
+
+Files: demo/pde/navier-stokes/cpp/lshape.xml.gz
+ demo/pde/navier-stokes/python/lshape.xml.gz
+Copyright: FëÑæ¢
ï _y›ÝÆ°· Ç›
+ v|6Òó7
÷㑆/Ðý¢ â-ظNº HÓ4Òó?¶ÆiRêCkBؽ£Ø%‡‹´Vù v<²óÉj¡*Ë ™Ùùé 4N“X0óvÍá#
License: UNKNOWN
FIXME
@@ -1593,7 +1574,7 @@
License: GPL-3+
FIXME
-Files: dolfin/mesh/predicates_init.h
+Files: dolfin/intersection/predicates_init.h
Copyright: *No copyright*
License: LGPL-2+
FIXME
@@ -1616,7 +1597,12 @@
FIXME
Files: demo/undocumented/dg-poisson/cpp/main.cpp
-Copyright: 2006-2008, Anders Logg and Kristian B. Oelgaard
+Copyright: 2006-2011, Anders Logg and Kristian B. Oelgaard
+License: LGPL-3+
+ FIXME
+
+Files: site-packages/dolfin_utils/documentation/generatecpprst.py
+Copyright: 2010, Anders Logg and Kristian Oelgaard
License: LGPL-3+
FIXME
@@ -1625,6 +1611,17 @@
License: LGPL-3+
FIXME
+Files: site-packages/dolfin_utils/documentation/indextemplates.py
+Copyright: 2011, Anders Logg, Kristian Oelgaard, and Marie E. Rognes
+License: LGPL-3+
+ FIXME
+
+Files: test/unit/intersection/cpp/test.cpp
+Copyright: 2011, Andrà Massing
+ Massing, 2011,
+License: LGPL-3+
+ FIXME
+
Files: bench/fem/assembly/cpp/main.cpp
Copyright: 2008-2010, Dag Lindbo, Anders Logg and Ilmar Wilbers
License: LGPL-3+
@@ -1635,16 +1632,16 @@
License: LGPL-3+
FIXME
-Files: demo/undocumented/courtemanche/cpp/main.cpp
-Copyright: Glenn Terje Lines, Ola Skavhaug and Simula Research Laboratory
-License: LGPL-3+
- FIXME
-
Files: site-packages/dolfin/common/donothing.py
Copyright: 2009, Hans Petter Langtangen
License: LGPL-3+
FIXME
+Files: test/unit/book/python/chapter_1.py
+Copyright: 2011, Hans Petter Langtangen and Anders Logg
+License: LGPL-3+
+ FIXME
+
Files: demo/pde/hyperelasticity/cpp/HyperElasticity.ufl
Copyright: 2009-2010, Harish Narayanan and Garth N. Wells
License: LGPL-3+
@@ -1655,7 +1652,7 @@
License: LGPL-3+
FIXME
-Files: site-packages/dolfin/common/plot.py
+Files: site-packages/dolfin/common/plotting.py
Copyright: 2008, Joachim B. Haga
License: LGPL-3+
FIXME
@@ -1665,13 +1662,18 @@
License: LGPL-3+
FIXME
+Files: demo/undocumented/elasticity/cpp/main.cpp
+Copyright: 2006-2009, Johan Jansson and Anders Logg
+License: LGPL-3+
+ FIXME
+
Files: demo/undocumented/dg-poisson/cpp/Poisson.ufl
Copyright: 2006-2007, Kristian B. Oelgaard and Anders Logg
License: LGPL-3+
FIXME
Files: demo/undocumented/dg-advection-diffusion/cpp/main.cpp
-Copyright: 2007-2008, Kristian B. Oelgaard, Anders Logg and Garth N. Wells
+Copyright: 2007-2011, Kristian B. Oelgaard, Anders Logg and Garth N. Wells
License: LGPL-3+
FIXME
@@ -1680,13 +1682,18 @@
License: LGPL-3+
FIXME
+Files: dolfin/common/MPI.h
+Copyright: 2007-2011, Magnus Vikstrøm and Garth N. Wells
+License: LGPL-3+
+ FIXME
+
Files: demo/undocumented/auto-adaptive-poisson/python/demo_auto-adaptive-poisson.py
Copyright: 2011, Marie E. Rognes and Anders Logg
License: LGPL-3+
FIXME
-Files: dolfin/common/mpiutils.h
-Copyright: 2008-2009, Niclas Jansson, Anders Logg and Ola Skavhaug
+Files: test/unit/math/python/test.py
+Copyright: 2011, Martin Alnaes
License: LGPL-3+
FIXME
@@ -1695,14 +1702,24 @@
License: LGPL-3+
FIXME
+Files: dolfin/io/XMLParameters.h
+Copyright: 2011, Ola Skavhaug, Anders Logg and Garth N. Wells
+License: LGPL-3+
+ FIXME
+
+Files: demo/undocumented/adaptive-poisson/python/demo_adaptive-poisson.py
+Copyright: 2008, Rolv Erlend Bredesen
+License: LGPL-3+
+ FIXME
+
Files: dolfin/fem/ufcexp.h
Copyright: 2009, Shawn W. Walker
License: LGPL-3+
FIXME
-Files: data/meshes/trimesh-64.xml.gz
-Copyright:
-License: UNKNOWN
+Files: dolfin/io/pugixml.cpp
+Copyright: < 128 ? table[static_cast<unsigned int>
+License: MIT/X11 (BSD like)
FIXME
Files: data/meshes/dolfin-1.xml.gz
@@ -1715,14 +1732,8 @@
License: UNKNOWN
FIXME
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+Files: demo/pde/cahn-hilliard/cahn-hilliard_c.png
+Copyright: {E±„}w5È[Ì
ÕÝì°Û½ûÌË_«)â .I
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Copyright: "º¼Óœ$k+ø/¢|¸uÙ
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@@ -1755,6 +1767,13 @@
License: UNKNOWN
FIXME
+Files: doc/sphinx-common/source/conf.py
+Copyright: ..." is shown in the HTML footer. Default is True
+ = True
+ = u'DOLFIN Core, https://launchpad.net/~dolfin-core'
+License: UNKNOWN
+ FIXME
+
Files: data/meshes/slit.xml.gz
Copyright: .~cÑ
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+License: UNKNOWN
+ FIXME
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+Files: demo/undocumented/advection-diffusion/velocity.xml.gz
+Copyright: <*<$¤— œ¾`Ï£7Œ–õ(~bSëw^Mß ´¼Z?|ÂÙ¾
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- 20010 Garth N. Wells <gnw20 at cam.ac.uk>
- 2002-2006, Anders Logg <logg at simula.no>
- 2002-2008, Anders Logg <logg at simula.no>
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