[SCM] The Molecular Modelling Toolkit packaging branch, master, updated. b18bf7019013a8baaa3dc8fa526322cf7b9a1f83

[Picca Frédéric-Emma?==?UTF-8?Q?nuel]

The following commit has been merged in the master branch:
commit b18bf7019013a8baaa3dc8fa526322cf7b9a1f83
Author: Picca Frédéric-Emmanuel <picca at debian.org>
Date:   Wed Sep 21 22:53:58 2011 +0200

    update the copyright file and the todo list (work in progress)
    
    need some carefull check...

diff --git a/debian/copyright b/debian/copyright
index 0a49342..7e9cbe8 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -11,6 +11,32 @@ Files: *
 Copyright: © 2009-2011 Konrad Hinsen <konrad.hinsen at synchrotron-soleil.fr>
 License: CeCILL-C
 
+Files: Src/ReadDCD.c Include/MMTK/readdcd.h
+Copyright: © 1995 The Board of Trustees of the University of Illinois
+License: ?
+
+Files: MMTK/MolecularSurface.py MMTK_surface.c MMTK/MolecularSurface.py MMTK/surfm.py MMTK/tess.py
+Copyright: © 2000 Peter McCluskey <pcm at rahul.net>
+	   © 2000-2011 Konrad Hinsen <konrad.hinsen at synchrotron-soleil.fr>
+License: other
+ You may do anything you want with it, provided this notice is kept intact.
+
+Files: Src/mconf.h Src/ndtr.c Src/polevl.c
+Copyright: © 1984, 1987, 1989, 1995 by Stephen L. Moshier
+License: ?
+
+Files: Src/config.c
+Copyright: © 2000, BeOpen.com.
+	   © 1995-2000, Corporation for National Research Initiatives.
+	   © 1990-1995, Stichting Mathematisch Centrum.
+License: ?
+
+Files: Src/MMTK_DCD.c MMTK/DCD.py
+Copyright: date? Lutz Ehrlich <mail?>
+	   © Konrad Hinsen <konrad.hinsen at synchrotron-soleil.fr>
+License: ?
+
+
 License: CeCill-C
  CeCILL-C FREE SOFTWARE LICENSE AGREEMENT
  .
diff --git a/debian/todo b/debian/todo
index 78eec97..815738d 100644
--- a/debian/todo
+++ b/debian/todo
@@ -1,10 +1,34 @@
 debian/control:
  - Improve the Description to be understandable even for a non-specialist.
  - review via debian-l10n-english
+ - list of python modules dependencies (Pyro, TKinter, lapack_lite, lapack_dge, cElementTree, symeig, itertools, etc...) ?
 
 debian/copyright
  dpmta licences the upstream of this module was contacted for
  this. work in progress.
+ .
+ Took from the Acknowledgements
+ .
+ The DCD reader was contributed by Lutz Ehrlich, and uses a C library
+ for reading DCD files (files Src/ReadDCD.c and Src/ReadDCD.h) which
+ was written by Mark Nelson at the University of Illinois.
+ so what is the licence ? Cecill-C compatible ?
+ .
+ The MolecularSurface module was contributed by Peter McCluskey.
+ is it DFSG-Free  due to the  
+ "You may do anything you want with it, provided this notice is kept intact."
+ .
+ Routines for matrix diagonalization were taken from LAPACK, and
+ for the erfc function from the CEPHES library.
+ what is the meaning of taken ? is it still valid ? it seems that this files erfc code
+ was taken from http://www.netlib.org/cephes/cprob.tgz which was updated since its integration into MMTK.
+ .
+ What is the .pdb files licences ?
+ .
+ Atomes / Groups / Molecules licences ?
+ .
+ amber_parm91  amber_parm94  amber_parm94.heme  amber_parm99  frcmod.ff99SB  frcmod.ff99SP  __init__.py  opls_parm
+ licences ?
 
 debian/pactches
  - debian-policy-tviewer
@@ -17,4 +41,4 @@ test integration:
  run during the build process.It is also really interesting to provide
  like numpy or scipy an MMTK.test() method which could be run on local
  platform. This is very convenient when you try to deal with
- integration problem.
\ No newline at end of file
+ integration problem. ?
\ No newline at end of file

-- 
The Molecular Modelling Toolkit packaging