[SCM] The Molecular Modelling Toolkit packaging branch, master, updated. upstream/2.7.7_hg-68-g274df7d
Picca Frédéric-Emma?==?UTF-8?Q?nuel
picca at debian.org
Sun Jan 20 16:16:04 UTC 2013
The following commit has been merged in the master branch:
commit 9d7142657ea58c7ce4df58354a3952abc1734d23
Author: Picca Frédéric-Emmanuel <picca at debian.org>
Date: Sun Jan 20 16:28:27 2013 +0100
fix the copyright with cme
diff --git a/debian/compat b/debian/compat
index f11c82a..ec63514 100644
--- a/debian/compat
+++ b/debian/compat
@@ -1 +1 @@
-9
\ No newline at end of file
+9
diff --git a/debian/control b/debian/control
index 278c9b9..32e561e 100644
--- a/debian/control
+++ b/debian/control
@@ -4,14 +4,14 @@ Uploaders: Picca Frédéric-Emmanuel <picca at debian.org>
Section: science
Priority: extra
Build-Depends: debhelper (>= 9),
+ cython,
+ libnetcdf-dev,
python-all-dev,
python-numpy,
- libnetcdf-dev,
python-netcdf,
python-scientific,
- python-sphinx (>= 1.0.7+dfsg),
- cython
-Standards-Version: 3.9.3
+ python-sphinx (>= 1.0.7+dfsg)
+Standards-Version: 3.9.4
Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-science/packages/mmtk.git
Vcs-Git: git://anonscm.debian.org/debian-science/packages/mmtk.git
Homepage: http://dirac.cnrs-orleans.fr/MMTK/
diff --git a/debian/copyright b/debian/copyright
index 76171aa..5d30488 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,4 +1,4 @@
-Format: http://dep.debian.net/deps/dep5
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: Konrad Hinsen <konrad.hinsen at synchrotron-soleil.fr>
Upstream-Contact: konrad.hinsen at synchrotron-soleil.fr
Source: https://sourcesup.cru.fr/frs/?group_id=186
@@ -13,7 +13,7 @@ License: CeCILL-C
Files: Src/ReadDCD.c Include/MMTK/readdcd.h
Copyright: © 1995 The Board of Trustees of the University of Illinois
- © 2000-2011 Konrad Hinsen <konrad.hinsen at synchrotron-soleil.fr>
+ © 2000-2011 Konrad Hinsen <konrad.hinsen at synchrotron-soleil.fr>
License: other
University of Illinois Open Source License
Copyright 2003 Theoretical and Computational Biophysics Group,
@@ -52,12 +52,12 @@ License: other
Files: MMTK/MolecularSurface.py MMTK_surface.c MMTK/MolecularSurface.py MMTK/surfm.py MMTK/tess.py
Copyright: © 2000 Peter McCluskey <pcm at rahul.net>
- © 2000-2011 Konrad Hinsen <konrad.hinsen at synchrotron-soleil.fr>
+ © 2000-2011 Konrad Hinsen <konrad.hinsen at synchrotron-soleil.fr>
License: other
You may do anything you want with it, provided this notice is kept intact.
Files: MMTK/ForceFields/Amber/amber_* MMTK/ForceFields/Amber/frcmod.* MMTK/ForceFields/Amber/opls_parm
-Copyright:
+Copyright: Nobody
License: public-domain
This was created by unknown people across unknown aeons, and
changed and updated by lots of more people. It was sung by
@@ -78,28 +78,28 @@ License: other
Entered-date: June 4, 2000
Description: Cephes provides special functions of mathematical physics
and related items in C language of interest to scientists
- and engineers. The new C language standard, C99, has
- complex variable types that are supported here and by
- the GNU C compiler.
- Partial contents --
- Elementary functions (log, exp, sin, cos, ...).
- Gamma, psi, dilograithm, Airy, Bessel, hypergeometric, Struve.
- Complete and incomplete elliptic functions.
- Exponential, sine & cosine, hyperbolic, Fresnel integrals.
- Probability integrals and their inverses: Gaussian,
- Poisson, F, Chi-square, gamma, Student's, binomial,
- negative binomial, Kolmogorov-Smirnov
- Arithmetic on polynomials, rationals, extended
- precision floating point.
- Complex arithmetic and elementary functions.
- Precisions --
- There are separate libraries for five different
- precisions: single, double, long double (80 or 96-bit),
- long double (128-bit), q-class (384-bit software arithmetic
- and check routines). There is a C++ class for the
- extended precision arithmetic.
- 1754 KB cephes-math-27.tar.gz
- includes precompiled binaries for ix86-linux
+ and engineers. The new C language standard, C99, has
+ complex variable types that are supported here and by
+ the GNU C compiler.
+ Partial contents --
+ Elementary functions (log, exp, sin, cos, ...).
+ Gamma, psi, dilograithm, Airy, Bessel, hypergeometric, Struve.
+ Complete and incomplete elliptic functions.
+ Exponential, sine & cosine, hyperbolic, Fresnel integrals.
+ Probability integrals and their inverses: Gaussian,
+ Poisson, F, Chi-square, gamma, Student's, binomial,
+ negative binomial, Kolmogorov-Smirnov
+ Arithmetic on polynomials, rationals, extended
+ precision floating point.
+ Complex arithmetic and elementary functions.
+ Precisions --
+ There are separate libraries for five different
+ precisions: single, double, long double (80 or 96-bit),
+ long double (128-bit), q-class (384-bit software arithmetic
+ and check routines). There is a C++ class for the
+ extended precision arithmetic.
+ 1754 KB cephes-math-27.tar.gz
+ includes precompiled binaries for ix86-linux
Keywords: math, special functions, probability, floating-point,
extended precision
Author: Stephen L. Moshier
@@ -111,58 +111,28 @@ License: other
Platform: Any
Copying-policy: Freely distributable
-Files: **/*.pdb
-Copyright:
-License:
- Advisory for the Use of the PDB Archive
- .
- By using the materials available in this archive, the user agrees to
- abide by the following conditions:
- .
- The archival data files in the PDB archive are made freely
- available to all users. Data files within the archive may be
- redistributed in original form without restriction. Redistribution of
- modified data files using the same file name as is on the FTP server is
- prohibited. The rules for file names are detailed at
- http://www.wwpdb.org/wwpdb_charter.html.
- .
- Data files containing PDB content may incorporate the PDB 4-letter
- entry name (e.g. 1ABC) in standard PDB records only if they are exactly
- the same as what is residing in the PDB archive. This does not prevent
- databases from including PDB entry_id's as cross-references where it is
- clear that they refer to the PDB archive. PDB records refer to the
- standard PDB format. The distribution of modified PDB data including
- the records: HEADER, CAVEAT, REVDAT, SPRSDE, DBREF, SEQADV, and MODRES
- in PDB format and their mmCIF and XML equivalents is not allowed.
- .
- The user assumes all responsibility for insuring that intellectual
- property claims associated with any data set deposited in the PDB
- archive are honored. It should be understood that the PDB data files do
- not contain any information on intellectual property claims with the
- exception in some cases of a reference for a patent involving the
- structure.
- .
- Any opinion, findings, and conclusions expressed in the PDB archive
- by the authors/contributors do not necessarily reflect the views of the
- wwPDB.
- .
- The data in the PDB archive are provided on an "as is" basis. The
- wwPDB nor its comprising institutions cannot be held liable to any
- party for direct, indirect, special, incidental, or consequential
- damages, including lost profits, arising from the use of PDB materials.
- .
- Resources on this site are provided without warranty of any kind,
- either expressed or implied. This includes but is not limited to
- merchantability or fitness for a particular purpose. The institutions
- managing this site make no representation that these resources will not
- infringe any patent or other proprietary right.
+Files: MMTK/Database/PDB/2YCC.pdb
+Copyright: A.M.BERGHUIS,G.D.BRAYER
+License: PDB
+
+Files: MMTK/Database/PDB/insulin.pdb
+Copyright: G.G.DODSON, E.J.DODSON, D.C.HODGKIN, N.W.ISAACS, M.VIJAYAN
+License: PDB
+
+Files: MMTK/Database/PDB/110d.pdb
+Copyright: G.A.LEONARD, T.W.HAMBLEY, K.MCAULEY-HECHT, T.BROWN, W.N.HUNTER
+License: PDB
+
+Files: MMTK/Database/PDB/bALA1.pdb
+Copyright: Nobody
+License: PDB
Files: Src/MMTK_DCD.c MMTK/DCD.py
Copyright: © Lutz Ehrlich <Lutz.Ehrlich at EMBL-Heidelberg.de>
- © Konrad Hinsen <konrad.hinsen at synchrotron-soleil.fr>
+ © Konrad Hinsen <konrad.hinsen at synchrotron-soleil.fr>
License: CeCILL-C
-License: CeCIll-C
+License: CeCILL-C
CeCILL-C FREE SOFTWARE LICENSE AGREEMENT
.
Notice
@@ -648,3 +618,47 @@ License: CeCIll-C
jurisdiction, by the more diligent Party.
.
Version 1.0 dated 2006-09-05.
+
+License: PDB
+ Advisory for the Use of the PDB Archive
+ .
+ By using the materials available in this archive, the user agrees to
+ abide by the following conditions:
+ .
+ The archival data files in the PDB archive are made freely
+ available to all users. Data files within the archive may be
+ redistributed in original form without restriction. Redistribution of
+ modified data files using the same file name as is on the FTP server is
+ prohibited. The rules for file names are detailed at
+ http://www.wwpdb.org/wwpdb_charter.html.
+ .
+ Data files containing PDB content may incorporate the PDB 4-letter
+ entry name (e.g. 1ABC) in standard PDB records only if they are exactly
+ the same as what is residing in the PDB archive. This does not prevent
+ databases from including PDB entry_id's as cross-references where it is
+ clear that they refer to the PDB archive. PDB records refer to the
+ standard PDB format. The distribution of modified PDB data including
+ the records: HEADER, CAVEAT, REVDAT, SPRSDE, DBREF, SEQADV, and MODRES
+ in PDB format and their mmCIF and XML equivalents is not allowed.
+ .
+ The user assumes all responsibility for insuring that intellectual
+ property claims associated with any data set deposited in the PDB
+ archive are honored. It should be understood that the PDB data files do
+ not contain any information on intellectual property claims with the
+ exception in some cases of a reference for a patent involving the
+ structure.
+ .
+ Any opinion, findings, and conclusions expressed in the PDB archive
+ by the authors/contributors do not necessarily reflect the views of the
+ wwPDB.
+ .
+ The data in the PDB archive are provided on an "as is" basis. The
+ wwPDB nor its comprising institutions cannot be held liable to any
+ party for direct, indirect, special, incidental, or consequential
+ damages, including lost profits, arising from the use of PDB materials.
+ .
+ Resources on this site are provided without warranty of any kind,
+ either expressed or implied. This includes but is not limited to
+ merchantability or fitness for a particular purpose. The institutions
+ managing this site make no representation that these resources will not
+ infringe any patent or other proprietary right.
--
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