[ssm] branch master updated (2b7fb39 -> e8835a8)
Frédéric-Emmanuel Picca
picca at alioth.debian.org
Mon Sep 2 19:46:08 UTC 2013
This is an automated email from the git hooks/post-receive script.
picca pushed a change to branch master
in repository ssm.
from 2b7fb39 update the symbols file
new 457a00c remove uupdate from the watch file
new 806ec2e Imported Upstream version 1.3
new 7f65742 Merge tag 'upstream/1.3'
new d9fea4a fix the package with cme
new e8835a8 prepare for release
The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
Makefile.am | 13 +-
Makefile.in | 245 ++-
aclocal.m4 | 446 +++--
build-aux/ar-lib | 270 +++
build-aux/config.guess | 261 +--
build-aux/config.sub | 213 +-
build-aux/depcomp | 189 +-
build-aux/install-sh | 35 +-
build-aux/missing | 148 +-
configure | 2793 +++++++++++++++------------
configure.ac | 7 +-
debian/changelog | 4 +-
debian/control | 41 +-
debian/copyright | 29 +-
debian/{libssm0.install => libssm1.install} | 0
debian/libssm1.symbols | 447 +++++
debian/rules | 2 +-
debian/watch | 2 +-
m4/libtool.m4 | 265 ++-
m4/ltoptions.m4 | 19 +-
ss_csia.h | 162 --
ss_graph.h | 266 ---
ss_vxedge.h | 232 ---
ssm_align.cpp | 393 ++--
ssm_align.h | 325 ++--
ss_csia.cpp => ssm_csia.cpp | 264 +--
ssm_csia.h | 162 ++
ssm_defs.h | 89 +
ss_graph.cpp => ssm_graph.cpp | 949 ++++-----
ssm_graph.h | 238 +++
ssm_malign.cpp | 2525 ++++++++++++++++++++++++
ssm_malign.h | 313 +++
ssm_superpose.cpp | 259 +--
ssm_superpose.h | 497 +++--
ss_vxedge.cpp => ssm_vxedge.cpp | 474 ++---
ssm_vxedge.h | 219 +++
sup_defs.h | 31 +
sup_multiple.cpp | 258 +++
sup_multiple.h | 34 +
sup_pairwise.cpp | 273 +++
sup_pairwise.h | 33 +
superpose.cpp | 464 ++---
42 files changed, 9441 insertions(+), 4448 deletions(-)
create mode 100755 build-aux/ar-lib
rename debian/{libssm0.install => libssm1.install} (100%)
create mode 100644 debian/libssm1.symbols
delete mode 100644 ss_csia.h
delete mode 100644 ss_graph.h
delete mode 100644 ss_vxedge.h
rename ss_csia.cpp => ssm_csia.cpp (75%)
create mode 100644 ssm_csia.h
create mode 100644 ssm_defs.h
rename ss_graph.cpp => ssm_graph.cpp (50%)
create mode 100644 ssm_graph.h
create mode 100644 ssm_malign.cpp
create mode 100644 ssm_malign.h
rename ss_vxedge.cpp => ssm_vxedge.cpp (67%)
create mode 100644 ssm_vxedge.h
create mode 100644 sup_defs.h
create mode 100644 sup_multiple.cpp
create mode 100644 sup_multiple.h
create mode 100644 sup_pairwise.cpp
create mode 100644 sup_pairwise.h
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