[yade] branch master updated (790a7ba -> fdb146b)

Anton Gladky gladk at alioth.debian.org
Mon Sep 30 19:08:35 UTC 2013


This is an automated email from the git hooks/post-receive script.

gladk pushed a change to branch master
in repository yade.

      from  790a7ba   Update changelog.
       new  bbab763   Update debian/watch. Take version number from github.
       new  1c35234   Remove binutils-gold. (Closes: #722544)
       new  eb29103   Add BD for new PFV-feature.
       new  27ffe4a   Update break/replaces for older yade versions.
       new  6b2b68f   Remove mencoder from recommends.
       new  fe54741   Add system-component of boost to be linked.
       new  39b346a   Override lintian error (seems, false-positive).
       new  9edd741   Use canonical VCS-field.
      adds  b3f639e   Imported Upstream version 1.00.0
       new  630bfc8   Merge tag 'upstream/1.00.0'
       new  fdb146b   Update changelog.

The 10 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .gitignore                                         |    1 +
 .kdev4/yade.kdev4                                  |   35 -
 CMakeLists.txt                                     |   77 +-
 ChangeLog                                          | 4825 ++++++++++++++++++++
 RELEASE                                            |    2 +-
 Yade.kdevelop                                      |  229 -
 cMake/FindCholmod.cmake                            |   41 +-
 cMake/FindLoki.cmake                               |    2 +-
 cMake/FindMetis.cmake                              |   16 +
 cMake/FindOpenBlas.cmake                           |   14 +
 core/Cell.hpp                                      |   12 +-
 core/Clump.cpp                                     |  159 +-
 core/Clump.hpp                                     |    2 +-
 core/Engine.hpp                                    |    2 +-
 core/ForceContainer.hpp                            |   88 +-
 core/Functor.hpp                                   |    2 +-
 core/Scene.cpp                                     |    6 +-
 core/main/main.py.in                               |   13 +-
 core/main/yade-batch.in                            |   20 +-
 debian/changelog                                   |   14 +
 debian/control                                     |   17 +-
 .../patches/10_add_system_boot_to_be_linked.patch  |   15 +
 debian/patches/series                              |    1 +
 debian/watch                                       |    4 +-
 debian/yade.lintian-overrides                      |    2 +
 doc/references.bib                                 |  104 +-
 doc/sphinx/conf.py                                 |    2 +-
 doc/sphinx/fig/micro-domains.png                   |  Bin 0 -> 37528 bytes
 doc/sphinx/formulation.rst                         |   78 +-
 doc/sphinx/installation.rst                        |   23 +-
 doc/sphinx/introduction.rst                        |    6 +-
 doc/sphinx/prog.rst                                |    8 +-
 doc/sphinx/references.bib                          |   40 +-
 doc/sphinx/templates/index.html                    |   12 +-
 doc/sphinx/user.rst                                |  262 +-
 doc/sphinx/yadeSphinx.py                           |    6 +-
 doc/yade-articles.bib                              |  841 ++--
 doc/yade-conferences.bib                           |   98 +-
 doc/yade-theses.bib                                |   20 +-
 examples/CapillaryPhys-example.py                  |    4 +-
 examples/FluidCouplingPFV/oedometer.py             |  165 +
 examples/LudingPM.py                               |   67 +
 examples/PIDController.py                          |   57 +
 examples/clumps/adaptClumpMasses-example.py        |   54 -
 examples/clumps/addToClump-example.py              |    6 +-
 examples/clumps/apply-buoyancy-clumps.py           |  145 +
 examples/clumps/releaseFromClump-example.py        |    4 +-
 examples/concrete/triax.py                         |  209 +
 examples/concrete/uniax.py                         |   14 +-
 examples/gts-horse/gts-random-pack-obb.py          |    8 +-
 examples/gts-horse/gts-random-pack.py              |   10 +-
 examples/jointedCohesiveFrictionalPM/README        |   13 +
 .../jointedCohesiveFrictionalPM/gravityLoading.py  |  152 +
 .../gravityLoading_velocityField_arrows.png        |  Bin 0 -> 277752 bytes
 .../gravityLoading_velocityField_spheres.png       |  Bin 0 -> 147381 bytes
 .../identificationSpheresOnJoint.py                |  209 +
 .../jointedCohesiveFrictionalPM/jointedModel.png   |  Bin 0 -> 221911 bytes
 .../packInGtsSurface.py                            |   46 +
 .../parallellepiped.gts                            |   39 +
 .../persistentPlane30Deg.stl                       |  Bin 0 -> 884 bytes
 examples/periodicSandPile.py                       |    2 +-
 examples/polyhedra/oneTetra.py                     |   43 +
 examples/polyhedra/twoTetras.py                    |  111 +
 examples/rotationalResistance.py                   |   46 +
 examples/simple-shear/simpleShear.py               |   13 +-
 examples/{test => }/spheresFactory.py              |    5 +-
 examples/tesselationwrapper/tesselationWrapper.py  |    2 +
 examples/test/CundallStrackTest.py                 |   21 -
 examples/test/Dem3DofGeom.py                       |   40 -
 examples/test/vtk-exporter/vtkExporter.py          |   13 +-
 examples/timeStepperUsage.py                       |    2 +-
 examples/triax-tutorial/script-session1.py         |    2 +-
 examples/tunnel-pack.py                            |   14 +-
 gui/CMakeLists.txt                                 |    5 +-
 gui/qt4/OpenGLManager.cpp                          |    2 +-
 lib/base/Math.hpp                                  |   31 +-
 lib/import/STLReader.hpp                           |   17 +-
 lib/opengl/GLUtils.cpp                             |    3 +-
 lib/opengl/OpenGLWrapper.hpp                       |   57 +-
 lib/triangulation/FlowBoundingSphere.cpp           |    2 +-
 lib/triangulation/FlowBoundingSphere.hpp           |  345 +-
 lib/triangulation/FlowBoundingSphere.ipp           |  190 +-
 lib/triangulation/FlowBoundingSphereLinSolv.hpp    |  192 +
 lib/triangulation/FlowBoundingSphereLinSolv.ipp    |  995 ++++
 lib/triangulation/Network.hpp                      |   42 +-
 lib/triangulation/Network.ipp                      |   73 +-
 lib/triangulation/PeriodicFlow.hpp                 |    5 +-
 lib/triangulation/PeriodicFlowLinSolv.hpp          |   36 +
 lib/triangulation/PeriodicFlowLinSolv.ipp          |  325 ++
 lib/triangulation/RegularTriangulation.h           |    1 -
 lib/triangulation/Tenseur3.h                       |  229 +-
 lib/triangulation/TriaxialState.h                  |    5 +-
 lib/triangulation/def_types.h                      |  448 +-
 pkg/common/Cylinder.cpp                            |    8 +-
 pkg/common/Cylinder.hpp                            |    6 +-
 pkg/common/Facet.cpp                               |    4 +-
 pkg/common/Facet.hpp                               |    3 +-
 pkg/common/Gl1_NormPhys.cpp                        |  137 +-
 pkg/common/Gl1_Sphere.cpp                          |    2 +-
 pkg/common/Grid.cpp                                |  150 +
 pkg/common/Grid.hpp                                |   45 +-
 pkg/common/InsertionSortCollider.cpp               |    1 -
 pkg/common/KinematicEngines.cpp                    |   42 +-
 pkg/common/KinematicEngines.hpp                    |   22 +
 pkg/common/OpenGLRenderer.cpp                      |    2 +-
 pkg/common/OpenGLRenderer.hpp                      |    1 +
 pkg/dem/BubbleMat.cpp                              |   78 +
 pkg/dem/BubbleMat.hpp                              |   75 +
 pkg/dem/CapillaryPhys.hpp                          |   15 +-
 pkg/dem/CapillaryStressRecorder.cpp                |   14 +-
 pkg/dem/CapillaryTriaxialTest.cpp                  |    2 +-
 pkg/dem/CapillaryTriaxialTest.hpp                  |    2 +-
 pkg/dem/CohesiveFrictionalContactLaw.hpp           |    2 -
 pkg/dem/CohesiveFrictionalPM.cpp                   |  200 -
 pkg/dem/CohesiveFrictionalPM.hpp                   |  114 -
 pkg/dem/CohesiveStateRPMRecorder.cpp               |   19 -
 pkg/dem/CohesiveStateRPMRecorder.hpp               |   19 -
 pkg/dem/ConcretePM.cpp                             |   48 +-
 pkg/dem/ConcretePM.hpp                             |    5 +-
 pkg/dem/Dem3DofGeom_FacetSphere.cpp                |  221 -
 pkg/dem/Dem3DofGeom_FacetSphere.hpp                |   80 -
 pkg/dem/Dem3DofGeom_SphereSphere.cpp               |  196 -
 pkg/dem/Dem3DofGeom_SphereSphere.hpp               |   80 -
 pkg/dem/Dem3DofGeom_WallSphere.cpp                 |  117 -
 pkg/dem/Dem3DofGeom_WallSphere.hpp                 |   70 -
 pkg/dem/DemXDofGeom.cpp                            |    4 +-
 pkg/dem/DemXDofGeom.hpp                            |   46 +-
 pkg/dem/DomainLimiter.cpp                          |   16 +-
 pkg/dem/FlowEngine.cpp                             |  227 +-
 pkg/dem/FlowEngine.hpp                             |  161 +-
 pkg/dem/GlobalStiffnessTimeStepper.cpp             |   83 +-
 pkg/dem/GlobalStiffnessTimeStepper.hpp             |    7 +-
 pkg/dem/HertzMindlin.cpp                           |   56 +-
 pkg/dem/HertzMindlin.hpp                           |    7 +-
 pkg/dem/InelastCohFrictMat.hpp                     |   59 +-
 pkg/dem/InelastCohFrictPhys.cpp                    |   15 +-
 pkg/dem/InelastCohFrictPhys.hpp                    |   96 +-
 ...p2_2xInelastCohFrictMat_InelastCohFrictPhys.cpp |  122 +-
 ...p2_2xInelastCohFrictMat_InelastCohFrictPhys.hpp |   10 +-
 pkg/dem/Ip2_ElastMat.cpp                           |   64 +
 pkg/dem/Ip2_ElastMat.hpp                           |   24 +
 .../Ip2_FrictMat_FrictMat_MindlinCapillaryPhys.hpp |   14 +-
 pkg/dem/JointedCohesiveFrictionalPM.cpp            |  235 +
 pkg/dem/JointedCohesiveFrictionalPM.hpp            |  110 +
 pkg/dem/KinemCTDEngine.hpp                         |    3 +-
 pkg/dem/KinemSimpleShearBox.cpp                    |    2 +-
 pkg/dem/L3Geom.cpp                                 |   16 +-
 pkg/dem/L3Geom.hpp                                 |    2 +-
 ...ScGeom6D_InelastCohFrictPhys_CohesionMoment.cpp |  371 +-
 ...ScGeom6D_InelastCohFrictPhys_CohesionMoment.hpp |   23 +-
 pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.cpp  |   31 +-
 pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.hpp  |   10 +-
 pkg/dem/LudingPM.cpp                               |  177 +
 pkg/dem/LudingPM.hpp                               |   65 +
 pkg/dem/NewtonIntegrator.cpp                       |    2 +-
 pkg/dem/NewtonIntegrator.hpp                       |    4 +-
 pkg/dem/ParticleSizeDistrbutionRPMRecorder.cpp     |  293 --
 pkg/dem/ParticleSizeDistrbutionRPMRecorder.hpp     |   51 -
 pkg/dem/PeriIsoCompressor.cpp                      |    9 +-
 pkg/dem/PeriIsoCompressor.hpp                      |   23 +-
 pkg/dem/RockPM.cpp                                 |  202 -
 pkg/dem/RockPM.hpp                                 |   96 -
 pkg/dem/SampleCapillaryPressureEngine.cpp          |    4 +-
 pkg/dem/Shop.cpp                                   |  102 +-
 pkg/dem/Shop.hpp                                   |    7 +-
 pkg/dem/SpherePack.cpp                             |   29 +-
 pkg/dem/SpherePack.hpp                             |    2 +-
 pkg/dem/TesselationWrapper.hpp                     |    2 +-
 pkg/dem/Tetra.cpp                                  |  654 ++-
 pkg/dem/Tetra.hpp                                  |  120 +-
 pkg/dem/TriaxialStateRecorder.hpp                  |    1 -
 pkg/dem/TriaxialStressController.cpp               |    8 +
 pkg/dem/TriaxialStressController.hpp               |    4 +-
 pkg/dem/TriaxialTest.hpp                           |    2 +-
 pkg/dem/VTKRecorder.cpp                            |   25 +-
 pkg/dem/VTKRecorder.hpp                            |    2 +-
 pkg/dem/ViscoelasticCapillarPM.cpp                 |  138 +
 pkg/dem/ViscoelasticPM.cpp                         |  121 +-
 pkg/dem/ViscoelasticPM.hpp                         |   26 +-
 pkg/dem/WirePM.cpp                                 |  183 +-
 pkg/dem/WirePM.hpp                                 |   40 +-
 py/CMakeLists.txt                                  |   19 +-
 py/_eudoxos.cpp                                    |  335 --
 py/_extraDocs.py                                   |    3 +-
 py/_utils.cpp                                      |  119 +-
 py/eudoxos.py                                      |  311 --
 py/export.py                                       |  168 +-
 py/mathWrap/miniEigen.cpp                          |    4 +
 py/pack/_packSpheres.cpp                           |    2 +-
 py/pack/pack.py                                    |   11 +-
 py/system.py                                       |    2 -
 py/tests/__init__.py                               |    4 +-
 py/tests/clump.py                                  |    4 +-
 py/utils.py                                        |  113 +-
 py/wrapper/yadeWrapper.cpp                         |  207 +-
 py/ymport.py                                       |    9 +-
 scripts/checks-and-tests/checks/DEM-PFV-check.py   |  146 +
 scripts/checks-and-tests/checks/README             |    2 +
 scripts/checks-and-tests/checks/checkGravity.py    |    2 -
 scripts/checks-and-tests/checks/checkList.py       |   16 +-
 scripts/checks-and-tests/checks/checkTestDummy.py  |    7 +
 scripts/checks-and-tests/checks/checkTestTriax.py  |    3 +
 .../checks-and-tests/checks/checkWirePM.py         |   70 +-
 scripts/checks-and-tests/checks/data/100spheres    |  100 +
 yade.kdev4                                         |    3 -
 205 files changed, 13588 insertions(+), 5676 deletions(-)
 delete mode 100644 .kdev4/yade.kdev4
 delete mode 100644 Yade.kdevelop
 create mode 100644 cMake/FindMetis.cmake
 create mode 100644 cMake/FindOpenBlas.cmake
 create mode 100644 debian/patches/10_add_system_boot_to_be_linked.patch
 create mode 100644 debian/patches/series
 create mode 100644 debian/yade.lintian-overrides
 create mode 100644 doc/sphinx/fig/micro-domains.png
 create mode 100644 examples/FluidCouplingPFV/oedometer.py
 create mode 100644 examples/LudingPM.py
 create mode 100644 examples/PIDController.py
 delete mode 100644 examples/clumps/adaptClumpMasses-example.py
 create mode 100644 examples/clumps/apply-buoyancy-clumps.py
 create mode 100644 examples/concrete/triax.py
 create mode 100644 examples/jointedCohesiveFrictionalPM/README
 create mode 100644 examples/jointedCohesiveFrictionalPM/gravityLoading.py
 create mode 100644 examples/jointedCohesiveFrictionalPM/gravityLoading_velocityField_arrows.png
 create mode 100644 examples/jointedCohesiveFrictionalPM/gravityLoading_velocityField_spheres.png
 create mode 100644 examples/jointedCohesiveFrictionalPM/identificationSpheresOnJoint.py
 create mode 100644 examples/jointedCohesiveFrictionalPM/jointedModel.png
 create mode 100644 examples/jointedCohesiveFrictionalPM/packInGtsSurface.py
 create mode 100644 examples/jointedCohesiveFrictionalPM/parallellepiped.gts
 create mode 100644 examples/jointedCohesiveFrictionalPM/persistentPlane30Deg.stl
 create mode 100644 examples/polyhedra/oneTetra.py
 create mode 100644 examples/polyhedra/twoTetras.py
 create mode 100644 examples/rotationalResistance.py
 rename examples/{test => }/spheresFactory.py (95%)
 delete mode 100644 examples/test/CundallStrackTest.py
 delete mode 100644 examples/test/Dem3DofGeom.py
 create mode 100644 lib/triangulation/FlowBoundingSphereLinSolv.hpp
 create mode 100644 lib/triangulation/FlowBoundingSphereLinSolv.ipp
 create mode 100644 lib/triangulation/PeriodicFlowLinSolv.hpp
 create mode 100644 lib/triangulation/PeriodicFlowLinSolv.ipp
 create mode 100644 pkg/dem/BubbleMat.cpp
 create mode 100644 pkg/dem/BubbleMat.hpp
 delete mode 100644 pkg/dem/CohesiveFrictionalPM.cpp
 delete mode 100644 pkg/dem/CohesiveFrictionalPM.hpp
 delete mode 100644 pkg/dem/CohesiveStateRPMRecorder.cpp
 delete mode 100644 pkg/dem/CohesiveStateRPMRecorder.hpp
 delete mode 100644 pkg/dem/Dem3DofGeom_FacetSphere.cpp
 delete mode 100644 pkg/dem/Dem3DofGeom_FacetSphere.hpp
 delete mode 100644 pkg/dem/Dem3DofGeom_SphereSphere.cpp
 delete mode 100644 pkg/dem/Dem3DofGeom_SphereSphere.hpp
 delete mode 100644 pkg/dem/Dem3DofGeom_WallSphere.cpp
 delete mode 100644 pkg/dem/Dem3DofGeom_WallSphere.hpp
 create mode 100644 pkg/dem/Ip2_ElastMat.cpp
 create mode 100644 pkg/dem/Ip2_ElastMat.hpp
 create mode 100644 pkg/dem/JointedCohesiveFrictionalPM.cpp
 create mode 100644 pkg/dem/JointedCohesiveFrictionalPM.hpp
 create mode 100644 pkg/dem/LudingPM.cpp
 create mode 100644 pkg/dem/LudingPM.hpp
 delete mode 100644 pkg/dem/ParticleSizeDistrbutionRPMRecorder.cpp
 delete mode 100644 pkg/dem/ParticleSizeDistrbutionRPMRecorder.hpp
 delete mode 100644 pkg/dem/RockPM.cpp
 delete mode 100644 pkg/dem/RockPM.hpp
 create mode 100644 pkg/dem/ViscoelasticCapillarPM.cpp
 delete mode 100644 py/_eudoxos.cpp
 delete mode 100644 py/eudoxos.py
 create mode 100644 scripts/checks-and-tests/checks/DEM-PFV-check.py
 copy examples/WireMatPM/wiretensiltest.py => scripts/checks-and-tests/checks/checkWirePM.py (80%)
 create mode 100644 scripts/checks-and-tests/checks/data/100spheres
 delete mode 100644 yade.kdev4

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