[ismrmrd] branch upstream updated (b1cbb4c -> 94bf2ca)

[Ghislain Vaillant]

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ghisvail-guest pushed a change to branch upstream
in repository ismrmrd.

      from  b1cbb4c   Imported Upstream version 0~20130706
       new  94bf2ca   Imported Upstream version 0.5.0

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 CMakeLists.txt                                     |    8 +-
 bindings/CMakeLists.txt                            |   17 +-
 bindings/java/CMakeLists.txt                       |   39 +-
 bindings/java/XMLString.java                       |   32 +-
 bindings/java/cfg.jxb                              |   10 +
 bindings/java/ismrmrd_java.i                       |   31 +
 bindings/java/{make_jar.sh => make_jar.sh.in}      |    5 +-
 bindings/python/CMakeLists.txt                     |   30 +-
 bindings/python/ismrmrd_python.i                   |  839 +++--------
 cmake/FindJava.cmake                               |  212 +++
 cmake/FindNumPy.cmake                              |  101 ++
 cmake/FindXSD.cmake                                |   72 +-
 examples/java/ismrmrd_test.java                    |   55 +-
 examples/matlab/{ => old}/ismrmrd_header2struct.m  |    0
 examples/matlab/old/simple_cartesian_recon.m       |  127 ++
 examples/matlab/{ => old}/simple_gridder.m         |    0
 examples/matlab/{ => old}/simple_spiral_recon.m    |    0
 examples/matlab/{ => old}/testsynth.m              |    0
 {matlab => examples/matlab/old}/xml2struct.m       |    0
 examples/matlab/simple_cartesian_recon.m           |   82 --
 examples/matlab/test_create_dataset.m              |  170 +++
 examples/matlab/test_recon_dataset.m               |  158 +++
 ismrmrd.h                                          | 1466 ++++++++++----------
 ismrmrd_hdf5_datatypes.h                           |    4 +
 matlab/+ismrmrd/+util/AcquisitionHeaderFromBytes.m |   47 +
 matlab/+ismrmrd/+util/AcquisitionHeaderToBytes.m   |   47 +
 matlab/+ismrmrd/+util/ImageHeaderFromBytes.m       |   32 +
 matlab/+ismrmrd/+util/ImageHeaderToBytes.m         |   32 +
 matlab/+ismrmrd/{old => +util}/hdf5_datatypes.m    |  187 +--
 matlab/+ismrmrd/+util/includejar.m                 |   15 +
 matlab/+ismrmrd/{old => +util}/isInt.m             |    0
 matlab/+ismrmrd/Acquisition.m                      |  122 ++
 matlab/+ismrmrd/AcquisitionFlags.m                 |   38 -
 matlab/+ismrmrd/AcquisitionHeader.m                |  627 ++++++---
 matlab/+ismrmrd/EncodingCounters.m                 |   94 --
 matlab/+ismrmrd/FlagBit.m                          |   32 -
 matlab/+ismrmrd/{old => }/Image.m                  |   18 +-
 matlab/+ismrmrd/ImageDataType.m                    |    9 -
 matlab/+ismrmrd/ImageFlags.m                       |   14 -
 matlab/+ismrmrd/ImageHeader.m                      |  554 +++++---
 matlab/+ismrmrd/ImageType.m                        |    9 -
 matlab/+ismrmrd/{old/file.m => IsmrmrdDataset.m}   |  200 +--
 matlab/+ismrmrd/XMLHeader.m                        |   33 -
 matlab/+ismrmrd/old/Acquisition.m                  |   49 -
 matlab/CMakeLists.txt                              |   72 +
 matlab/XMLString.java                              |   42 +
 matlab/cfg.jxb                                     |   10 +
 schema/ismrmrd.xsd                                 |  199 ++-
 48 files changed, 3421 insertions(+), 2519 deletions(-)
 create mode 100644 bindings/java/cfg.jxb
 rename bindings/java/{make_jar.sh => make_jar.sh.in} (64%)
 mode change 100755 => 100644
 create mode 100644 cmake/FindJava.cmake
 create mode 100644 cmake/FindNumPy.cmake
 rename examples/matlab/{ => old}/ismrmrd_header2struct.m (100%)
 create mode 100644 examples/matlab/old/simple_cartesian_recon.m
 rename examples/matlab/{ => old}/simple_gridder.m (100%)
 rename examples/matlab/{ => old}/simple_spiral_recon.m (100%)
 rename examples/matlab/{ => old}/testsynth.m (100%)
 rename {matlab => examples/matlab/old}/xml2struct.m (100%)
 delete mode 100644 examples/matlab/simple_cartesian_recon.m
 create mode 100644 examples/matlab/test_create_dataset.m
 create mode 100644 examples/matlab/test_recon_dataset.m
 create mode 100644 matlab/+ismrmrd/+util/AcquisitionHeaderFromBytes.m
 create mode 100644 matlab/+ismrmrd/+util/AcquisitionHeaderToBytes.m
 create mode 100644 matlab/+ismrmrd/+util/ImageHeaderFromBytes.m
 create mode 100644 matlab/+ismrmrd/+util/ImageHeaderToBytes.m
 rename matlab/+ismrmrd/{old => +util}/hdf5_datatypes.m (90%)
 create mode 100644 matlab/+ismrmrd/+util/includejar.m
 rename matlab/+ismrmrd/{old => +util}/isInt.m (100%)
 create mode 100644 matlab/+ismrmrd/Acquisition.m
 delete mode 100644 matlab/+ismrmrd/AcquisitionFlags.m
 delete mode 100644 matlab/+ismrmrd/EncodingCounters.m
 delete mode 100644 matlab/+ismrmrd/FlagBit.m
 rename matlab/+ismrmrd/{old => }/Image.m (84%)
 delete mode 100644 matlab/+ismrmrd/ImageDataType.m
 delete mode 100644 matlab/+ismrmrd/ImageFlags.m
 delete mode 100644 matlab/+ismrmrd/ImageType.m
 rename matlab/+ismrmrd/{old/file.m => IsmrmrdDataset.m} (64%)
 delete mode 100644 matlab/+ismrmrd/XMLHeader.m
 delete mode 100644 matlab/+ismrmrd/old/Acquisition.m
 create mode 100644 matlab/CMakeLists.txt
 create mode 100644 matlab/XMLString.java
 create mode 100644 matlab/cfg.jxb

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