[mlpack] 07/11: Merge tag 'upstream/1.0.8'
Barak A. Pearlmutter
barak+git at cs.nuim.ie
Sat Apr 5 13:03:07 UTC 2014
This is an automated email from the git hooks/post-receive script.
bap pushed a commit to branch master
in repository mlpack.
commit fec51192d1317acde4312db0de436f52fb73c4b7
Merge: b233645 47bcdea
Author: Barak A. Pearlmutter <barak+git at cs.nuim.ie>
Date: Fri Apr 4 22:35:44 2014 +0100
Merge tag 'upstream/1.0.8'
Upstream version 1.0.8
CMake/CreateSVNVersionHeader.cmake | 25 +
CMakeLists.txt | 47 +-
COPYRIGHT.txt | 4 +-
Doxyfile | 2 +-
HISTORY.txt | 18 +
doc/guide/build.hpp | 9 +-
doc/guide/version.hpp | 29 +
src/mlpack/CMakeLists.txt | 2 +-
src/mlpack/core.hpp | 4 +-
src/mlpack/core/data/load.hpp | 2 +-
src/mlpack/core/data/load_impl.hpp | 2 +-
src/mlpack/core/data/normalize_labels.hpp | 2 +-
src/mlpack/core/data/normalize_labels_impl.hpp | 2 +-
src/mlpack/core/data/save.hpp | 2 +-
src/mlpack/core/data/save_impl.hpp | 2 +-
src/mlpack/core/dists/discrete_distribution.cpp | 2 +-
src/mlpack/core/dists/discrete_distribution.hpp | 2 +-
src/mlpack/core/dists/gaussian_distribution.cpp | 2 +-
src/mlpack/core/dists/gaussian_distribution.hpp | 2 +-
src/mlpack/core/kernels/cosine_distance.hpp | 2 +-
src/mlpack/core/kernels/cosine_distance_impl.hpp | 2 +-
src/mlpack/core/kernels/epanechnikov_kernel.cpp | 2 +-
src/mlpack/core/kernels/epanechnikov_kernel.hpp | 2 +-
.../core/kernels/epanechnikov_kernel_impl.hpp | 2 +-
src/mlpack/core/kernels/example_kernel.hpp | 2 +-
src/mlpack/core/kernels/gaussian_kernel.hpp | 2 +-
.../core/kernels/hyperbolic_tangent_kernel.hpp | 2 +-
src/mlpack/core/kernels/kernel_traits.hpp | 2 +-
src/mlpack/core/kernels/laplacian_kernel.hpp | 2 +-
src/mlpack/core/kernels/linear_kernel.hpp | 2 +-
src/mlpack/core/kernels/polynomial_kernel.hpp | 2 +-
.../core/kernels/pspectrum_string_kernel.cpp | 2 +-
.../core/kernels/pspectrum_string_kernel.hpp | 2 +-
.../core/kernels/pspectrum_string_kernel_impl.hpp | 2 +-
src/mlpack/core/kernels/spherical_kernel.hpp | 2 +-
src/mlpack/core/kernels/triangular_kernel.hpp | 2 +-
src/mlpack/core/math/clamp.hpp | 2 +-
src/mlpack/core/math/lin_alg.cpp | 2 +-
src/mlpack/core/math/lin_alg.hpp | 2 +-
src/mlpack/core/math/random.cpp | 2 +-
src/mlpack/core/math/random.hpp | 2 +-
src/mlpack/core/math/range.hpp | 2 +-
src/mlpack/core/math/range_impl.hpp | 2 +-
src/mlpack/core/math/round.hpp | 2 +-
src/mlpack/core/metrics/ip_metric.hpp | 2 +-
src/mlpack/core/metrics/ip_metric_impl.hpp | 2 +-
src/mlpack/core/metrics/lmetric.hpp | 2 +-
src/mlpack/core/metrics/lmetric_impl.hpp | 2 +-
src/mlpack/core/metrics/mahalanobis_distance.hpp | 2 +-
.../core/metrics/mahalanobis_distance_impl.hpp | 2 +-
.../optimizers/aug_lagrangian/aug_lagrangian.hpp | 2 +-
.../aug_lagrangian/aug_lagrangian_function.hpp | 2 +-
.../aug_lagrangian_function_impl.hpp | 2 +-
.../aug_lagrangian/aug_lagrangian_impl.hpp | 2 +-
.../aug_lagrangian_test_functions.cpp | 2 +-
.../aug_lagrangian_test_functions.hpp | 2 +-
src/mlpack/core/optimizers/lbfgs/lbfgs.hpp | 7 +-
src/mlpack/core/optimizers/lbfgs/lbfgs_impl.hpp | 2 +-
.../core/optimizers/lbfgs/test_functions.cpp | 2 +-
.../core/optimizers/lbfgs/test_functions.hpp | 2 +-
src/mlpack/core/optimizers/lrsdp/lrsdp.hpp | 2 +-
src/mlpack/core/optimizers/lrsdp/lrsdp_impl.hpp | 2 +-
src/mlpack/core/optimizers/sgd/sgd.hpp | 2 +-
src/mlpack/core/optimizers/sgd/sgd_impl.hpp | 2 +-
src/mlpack/core/optimizers/sgd/test_function.cpp | 2 +-
src/mlpack/core/optimizers/sgd/test_function.hpp | 2 +-
src/mlpack/core/tree/CMakeLists.txt | 4 +
src/mlpack/core/tree/ballbound.hpp | 2 +-
src/mlpack/core/tree/ballbound_impl.hpp | 2 +-
src/mlpack/core/tree/binary_space_tree.hpp | 2 +-
.../tree/binary_space_tree/binary_space_tree.hpp | 8 +-
.../binary_space_tree/binary_space_tree_impl.hpp | 18 +-
.../tree/binary_space_tree/dual_tree_traverser.hpp | 2 +-
.../binary_space_tree/dual_tree_traverser_impl.hpp | 2 +-
.../binary_space_tree/single_tree_traverser.hpp | 2 +-
.../single_tree_traverser_impl.hpp | 2 +-
src/mlpack/core/tree/binary_space_tree/traits.hpp | 2 +-
src/mlpack/core/tree/bounds.hpp | 2 +-
src/mlpack/core/tree/cosine_tree/cosine_tree.hpp | 120 ++++
.../core/tree/cosine_tree/cosine_tree_builder.hpp | 123 ++++
.../tree/cosine_tree/cosine_tree_builder_impl.hpp | 187 ++++++
.../core/tree/cosine_tree/cosine_tree_impl.hpp | 123 ++++
src/mlpack/core/tree/cover_tree.hpp | 2 +-
src/mlpack/core/tree/cover_tree/cover_tree.hpp | 10 +-
.../core/tree/cover_tree/cover_tree_impl.hpp | 2 +-
.../core/tree/cover_tree/dual_tree_traverser.hpp | 2 +-
.../tree/cover_tree/dual_tree_traverser_impl.hpp | 2 +-
.../core/tree/cover_tree/first_point_is_root.hpp | 2 +-
.../core/tree/cover_tree/single_tree_traverser.hpp | 2 +-
.../tree/cover_tree/single_tree_traverser_impl.hpp | 2 +-
src/mlpack/core/tree/cover_tree/traits.hpp | 2 +-
src/mlpack/core/tree/hrectbound.hpp | 2 +-
src/mlpack/core/tree/hrectbound_impl.hpp | 2 +-
src/mlpack/core/tree/mrkd_statistic.cpp | 2 +-
src/mlpack/core/tree/mrkd_statistic.hpp | 2 +-
src/mlpack/core/tree/mrkd_statistic_impl.hpp | 2 +-
src/mlpack/core/tree/periodichrectbound.hpp | 2 +-
src/mlpack/core/tree/periodichrectbound_impl.hpp | 2 +-
src/mlpack/core/tree/statistic.hpp | 2 +-
src/mlpack/core/tree/tree_traits.hpp | 2 +-
src/mlpack/core/util/CMakeLists.txt | 2 +
src/mlpack/core/util/cli.cpp | 14 +-
src/mlpack/core/util/cli.hpp | 8 +-
src/mlpack/core/util/cli_deleter.cpp | 2 +-
src/mlpack/core/util/cli_deleter.hpp | 2 +-
src/mlpack/core/util/cli_impl.hpp | 2 +-
src/mlpack/core/util/log.cpp | 2 +-
src/mlpack/core/util/log.hpp | 2 +-
src/mlpack/core/util/nulloutstream.hpp | 2 +-
src/mlpack/core/util/option.cpp | 2 +-
src/mlpack/core/util/option.hpp | 2 +-
src/mlpack/core/util/option_impl.hpp | 2 +-
src/mlpack/core/util/prefixedoutstream.cpp | 2 +-
src/mlpack/core/util/prefixedoutstream.hpp | 2 +-
src/mlpack/core/util/prefixedoutstream_impl.hpp | 2 +-
src/mlpack/core/util/save_restore_utility.cpp | 2 +-
src/mlpack/core/util/save_restore_utility.hpp | 2 +-
src/mlpack/core/util/save_restore_utility_impl.hpp | 2 +-
src/mlpack/core/util/sfinae_utility.hpp | 2 +-
src/mlpack/core/util/string_util.cpp | 14 +-
src/mlpack/core/util/string_util.hpp | 2 +-
src/mlpack/core/util/timers.cpp | 2 +-
src/mlpack/core/util/timers.hpp | 2 +-
.../core/{tree/cover_tree.hpp => util/version.cpp} | 27 +-
.../core/util/{string_util.hpp => version.hpp} | 26 +-
src/mlpack/methods/CMakeLists.txt | 2 +
src/mlpack/methods/cf/cf.cpp | 2 +-
src/mlpack/methods/cf/cf.hpp | 2 +-
src/mlpack/methods/cf/cf_main.cpp | 2 +-
src/mlpack/methods/det/det_main.cpp | 2 +-
src/mlpack/methods/det/dt_utils.cpp | 2 +-
src/mlpack/methods/det/dt_utils.hpp | 2 +-
src/mlpack/methods/det/dtree.cpp | 2 +-
src/mlpack/methods/det/dtree.hpp | 2 +-
src/mlpack/methods/emst/CMakeLists.txt | 17 +-
src/mlpack/methods/emst/dtb.hpp | 66 +-
src/mlpack/methods/emst/dtb_impl.hpp | 2 +-
src/mlpack/methods/emst/dtb_rules.hpp | 2 +-
src/mlpack/methods/emst/dtb_rules_impl.hpp | 2 +-
src/mlpack/methods/emst/dtb_stat.hpp | 96 +++
src/mlpack/methods/emst/edge_pair.hpp | 2 +-
src/mlpack/methods/emst/emst_main.cpp | 2 +-
src/mlpack/methods/emst/union_find.hpp | 2 +-
src/mlpack/methods/fastmks/fastmks.hpp | 2 +-
src/mlpack/methods/fastmks/fastmks_impl.hpp | 2 +-
src/mlpack/methods/fastmks/fastmks_main.cpp | 2 +-
src/mlpack/methods/fastmks/fastmks_rules.hpp | 2 +-
src/mlpack/methods/fastmks/fastmks_rules_impl.hpp | 4 +-
src/mlpack/methods/fastmks/fastmks_stat.hpp | 2 +-
src/mlpack/methods/gmm/diagonal_constraint.hpp | 2 +-
.../methods/gmm/eigenvalue_ratio_constraint.hpp | 2 +-
src/mlpack/methods/gmm/em_fit.hpp | 22 +-
src/mlpack/methods/gmm/em_fit_impl.hpp | 15 +-
src/mlpack/methods/gmm/gmm.hpp | 22 +-
src/mlpack/methods/gmm/gmm_impl.hpp | 62 +-
src/mlpack/methods/gmm/gmm_main.cpp | 2 +-
src/mlpack/methods/gmm/no_constraint.hpp | 2 +-
src/mlpack/methods/gmm/phi.hpp | 2 +-
.../methods/gmm/positive_definite_constraint.hpp | 2 +-
src/mlpack/methods/hmm/hmm.hpp | 2 +-
src/mlpack/methods/hmm/hmm_generate_main.cpp | 2 +-
src/mlpack/methods/hmm/hmm_impl.hpp | 2 +-
src/mlpack/methods/hmm/hmm_loglik_main.cpp | 2 +-
src/mlpack/methods/hmm/hmm_train_main.cpp | 2 +-
src/mlpack/methods/hmm/hmm_util.hpp | 2 +-
src/mlpack/methods/hmm/hmm_util_impl.hpp | 2 +-
src/mlpack/methods/hmm/hmm_viterbi_main.cpp | 2 +-
src/mlpack/methods/kernel_pca/kernel_pca.hpp | 2 +-
src/mlpack/methods/kernel_pca/kernel_pca_impl.hpp | 2 +-
src/mlpack/methods/kernel_pca/kernel_pca_main.cpp | 19 +-
src/mlpack/methods/kmeans/allow_empty_clusters.hpp | 2 +-
src/mlpack/methods/kmeans/kmeans.hpp | 2 +-
src/mlpack/methods/kmeans/kmeans_impl.hpp | 2 +-
src/mlpack/methods/kmeans/kmeans_main.cpp | 2 +-
.../methods/kmeans/max_variance_new_cluster.hpp | 2 +-
.../kmeans/max_variance_new_cluster_impl.hpp | 2 +-
src/mlpack/methods/kmeans/random_partition.hpp | 2 +-
src/mlpack/methods/kmeans/refined_start.hpp | 2 +-
src/mlpack/methods/kmeans/refined_start_impl.hpp | 2 +-
src/mlpack/methods/lars/lars.cpp | 2 +-
src/mlpack/methods/lars/lars.hpp | 2 +-
src/mlpack/methods/lars/lars_main.cpp | 2 +-
.../linear_regression/linear_regression.cpp | 2 +-
.../linear_regression/linear_regression.hpp | 2 +-
.../linear_regression/linear_regression_main.cpp | 4 +-
src/mlpack/methods/local_coordinate_coding/lcc.hpp | 2 +-
.../methods/local_coordinate_coding/lcc_impl.hpp | 2 +-
.../methods/local_coordinate_coding/lcc_main.cpp | 2 +-
.../methods/logistic_regression/CMakeLists.txt | 26 +
.../logistic_regression/logistic_regression.hpp | 161 +++++
.../logistic_regression_function.cpp | 161 +++++
.../logistic_regression_function.hpp | 136 ++++
.../logistic_regression_impl.hpp | 145 +++++
.../logistic_regression_main.cpp | 258 ++++++++
src/mlpack/methods/lsh/lsh_main.cpp | 2 +-
src/mlpack/methods/lsh/lsh_search.hpp | 2 +-
src/mlpack/methods/lsh/lsh_search_impl.hpp | 2 +-
.../methods/naive_bayes/naive_bayes_classifier.hpp | 2 +-
.../naive_bayes/naive_bayes_classifier_impl.hpp | 2 +-
src/mlpack/methods/naive_bayes/nbc_main.cpp | 2 +-
src/mlpack/methods/nca/nca.hpp | 2 +-
src/mlpack/methods/nca/nca_impl.hpp | 2 +-
src/mlpack/methods/nca/nca_main.cpp | 2 +-
.../methods/nca/nca_softmax_error_function.hpp | 2 +-
.../nca/nca_softmax_error_function_impl.hpp | 2 +-
src/mlpack/methods/neighbor_search/allkfn_main.cpp | 4 +-
src/mlpack/methods/neighbor_search/allknn_main.cpp | 2 +-
.../methods/neighbor_search/neighbor_search.hpp | 2 +-
.../neighbor_search/neighbor_search_impl.hpp | 6 +-
.../neighbor_search/neighbor_search_rules.hpp | 2 +-
.../neighbor_search/neighbor_search_rules_impl.hpp | 2 +-
.../neighbor_search/neighbor_search_stat.hpp | 2 +-
.../sort_policies/furthest_neighbor_sort.cpp | 2 +-
.../sort_policies/furthest_neighbor_sort.hpp | 2 +-
.../sort_policies/furthest_neighbor_sort_impl.hpp | 2 +-
.../sort_policies/nearest_neighbor_sort.cpp | 2 +-
.../sort_policies/nearest_neighbor_sort.hpp | 2 +-
.../sort_policies/nearest_neighbor_sort_impl.hpp | 2 +-
src/mlpack/methods/neighbor_search/typedef.hpp | 2 +-
src/mlpack/methods/neighbor_search/unmap.cpp | 2 +-
src/mlpack/methods/neighbor_search/unmap.hpp | 2 +-
src/mlpack/methods/nmf/als_update_rules.hpp | 2 +-
src/mlpack/methods/nmf/mult_dist_update_rules.hpp | 2 +-
src/mlpack/methods/nmf/mult_div_update_rules.hpp | 2 +-
src/mlpack/methods/nmf/nmf.hpp | 2 +-
src/mlpack/methods/nmf/nmf_impl.hpp | 2 +-
src/mlpack/methods/nmf/nmf_main.cpp | 2 +-
src/mlpack/methods/nmf/random_acol_init.hpp | 2 +-
src/mlpack/methods/nmf/random_init.hpp | 2 +-
src/mlpack/methods/pca/pca.cpp | 7 +-
src/mlpack/methods/pca/pca.hpp | 2 +-
src/mlpack/methods/pca/pca_main.cpp | 2 +-
src/mlpack/methods/radical/radical.cpp | 2 +-
src/mlpack/methods/radical/radical.hpp | 2 +-
src/mlpack/methods/radical/radical_main.cpp | 2 +-
src/mlpack/methods/range_search/range_search.hpp | 2 +-
.../methods/range_search/range_search_impl.hpp | 2 +-
.../methods/range_search/range_search_main.cpp | 2 +-
.../methods/range_search/range_search_rules.hpp | 2 +-
.../range_search/range_search_rules_impl.hpp | 2 +-
.../methods/range_search/range_search_stat.hpp | 2 +-
src/mlpack/methods/rann/allkrann_main.cpp | 4 +-
src/mlpack/methods/rann/ra_search.hpp | 2 +-
src/mlpack/methods/rann/ra_search_impl.hpp | 2 +-
src/mlpack/methods/rann/ra_search_rules.hpp | 2 +-
src/mlpack/methods/rann/ra_search_rules_impl.hpp | 2 +-
src/mlpack/methods/rann/ra_typedef.hpp | 2 +-
.../data_dependent_random_initializer.hpp | 2 +-
.../methods/sparse_coding/nothing_initializer.hpp | 2 +-
.../methods/sparse_coding/random_initializer.hpp | 2 +-
src/mlpack/methods/sparse_coding/sparse_coding.hpp | 2 +-
.../methods/sparse_coding/sparse_coding_impl.hpp | 10 +-
.../methods/sparse_coding/sparse_coding_main.cpp | 2 +-
src/mlpack/tests/CMakeLists.txt | 1 +
src/mlpack/tests/allkfn_test.cpp | 2 +-
src/mlpack/tests/allknn_test.cpp | 2 +-
src/mlpack/tests/allkrann_search_test.cpp | 2 +-
src/mlpack/tests/aug_lagrangian_test.cpp | 2 +-
src/mlpack/tests/cf_test.cpp | 2 +-
src/mlpack/tests/cli_test.cpp | 2 +-
src/mlpack/tests/det_test.cpp | 2 +-
src/mlpack/tests/distribution_test.cpp | 2 +-
src/mlpack/tests/emst_test.cpp | 2 +-
src/mlpack/tests/fastmks_test.cpp | 2 +-
src/mlpack/tests/gmm_test.cpp | 159 ++++-
src/mlpack/tests/hmm_test.cpp | 27 +-
src/mlpack/tests/kernel_pca_test.cpp | 2 +-
src/mlpack/tests/kernel_test.cpp | 2 +-
src/mlpack/tests/kernel_traits_test.cpp | 2 +-
src/mlpack/tests/kmeans_test.cpp | 2 +-
src/mlpack/tests/lars_test.cpp | 2 +-
src/mlpack/tests/lbfgs_test.cpp | 2 +-
src/mlpack/tests/lin_alg_test.cpp | 2 +-
src/mlpack/tests/linear_regression_test.cpp | 2 +-
src/mlpack/tests/load_save_test.cpp | 2 +-
src/mlpack/tests/local_coordinate_coding_test.cpp | 2 +-
src/mlpack/tests/logistic_regression_test.cpp | 709 +++++++++++++++++++++
src/mlpack/tests/lrsdp_test.cpp | 2 +-
src/mlpack/tests/lsh_test.cpp | 2 +-
src/mlpack/tests/math_test.cpp | 2 +-
src/mlpack/tests/metric_test.cpp | 2 +-
src/mlpack/tests/mlpack_test.cpp | 2 +-
src/mlpack/tests/nbc_test.cpp | 2 +-
src/mlpack/tests/nca_test.cpp | 2 +-
src/mlpack/tests/nmf_test.cpp | 2 +-
src/mlpack/tests/old_boost_test_definitions.hpp | 2 +-
src/mlpack/tests/pca_test.cpp | 2 +-
src/mlpack/tests/radical_test.cpp | 2 +-
src/mlpack/tests/range_search_test.cpp | 2 +-
src/mlpack/tests/save_restore_utility_test.cpp | 2 +-
src/mlpack/tests/sgd_test.cpp | 2 +-
src/mlpack/tests/sort_policy_test.cpp | 2 +-
src/mlpack/tests/sparse_coding_test.cpp | 2 +-
src/mlpack/tests/tree_test.cpp | 244 ++++++-
src/mlpack/tests/tree_traits_test.cpp | 2 +-
src/mlpack/tests/union_find_test.cpp | 2 +-
296 files changed, 3282 insertions(+), 426 deletions(-)
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