[liggghts] branch master updated (ff040f2 -> b3c8636)
Anton Gladky
gladk at moszumanska.debian.org
Wed Apr 23 21:12:22 UTC 2014
This is an automated email from the git hooks/post-receive script.
gladk pushed a change to branch master
in repository liggghts.
from ff040f2 Update changelog.
adds f333916 Imported Upstream version 3.0.1+repack
new 9f574d0 Imported Upstream version 3.0.1+repack
new ce0d980 Build against VTK6 instead of VTK5.
new f8e3515 Add autotest.
new 833caea Set Standards-Version: 3.9.5. No changes.
new b3c8636 Update changelog.
The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
debian/changelog | 9 +
debian/control | 7 +-
debian/patches/01_add_cmake_files.patch | 24 +-
debian/patches/05_vtk6_support.patch | 15 +
debian/patches/series | 1 +
debian/tests/control | 2 +
debian/tests/heat | 7 +
doc/Eqs/model_b1.png | Bin 28056 -> 25479 bytes
doc/Section_gran_models.html | 2 +-
doc/Section_gran_models.txt | 3 +-
doc/dump.html | 6 +-
doc/dump.txt | 6 +-
doc/fix_heat_gran_conduction.html | 4 +-
doc/fix_heat_gran_conduction.txt | 4 +-
doc/gran_rolling_friction_epsd.html | 6 +-
doc/gran_rolling_friction_epsd.txt | 2 +-
doc/gran_rolling_friction_epsd2.html | 10 +-
doc/gran_rolling_friction_epsd2.txt | 6 +-
.../Tutorials_public/chute_wear/run.config | 9 -
.../LIGGGHTS/Tutorials_public/cohesion/run.config | 14 -
.../Tutorials_public/contactModels/run.config | 9 -
.../LIGGGHTS/Tutorials_public/conveyor/run.config | 9 -
.../Tutorials_public/heatTransfer_1/run.config | 9 -
.../Tutorials_public/heatTransfer_2/run.config | 9 -
.../Tutorials_public/hysteresis/run.config | 14 -
.../Tutorials_public/insert_stream/run.config | 9 -
.../LIGGGHTS/Tutorials_public/meshGran/run.config | 9 -
.../LIGGGHTS/Tutorials_public/mesh_tet/run.config | 9 -
.../Tutorials_public/movingMeshGran/run.config | 9 -
.../LIGGGHTS/Tutorials_public/packing/run.config | 9 -
.../LIGGGHTS/Tutorials_public/sph_1/run.config | 9 -
.../LIGGGHTS/Tutorials_public/sph_2/run.config | 9 -
src/MAKE/{Makefile.fedora => Makefile.clang} | 5 +-
src/MAKE/Makefile.fedora | 4 +-
src/MAKE/Makefile.fedora_debug | 4 +-
src/MAKE/Makefile.fedora_fpic | 4 +-
src/MAKE/Makefile.g++ | 0
src/MAKE/Makefile.g++3 | 0
src/MAKE/Makefile.linux | 0
src/MAKE/Makefile.mac | 0
src/MAKE/Makefile.mac_mpi | 0
src/MAKE/Makefile.odin | 0
src/MAKE/Makefile.serial | 0
src/MAKE/Makefile.tesla | 0
src/MAKE/Makefile.ubuntuVTK | 15 +-
src/Make.sh | 32 +-
src/POEMS/fix_poems.cpp | 805 +++++++++++++--------
src/POEMS/fix_poems.h | 14 +-
src/RIGID/fix_rigid.cpp | 12 +-
src/RIGID/fix_rigid_small.cpp | 32 +-
src/abstract_mesh.h | 2 +-
src/associative_pointer_array.h | 1 +
src/associative_pointer_array_I.h | 11 +
src/atom.cpp | 4 +-
src/atom.h | 2 +-
src/atom_vec.h | 2 +
src/atom_vec_body.cpp | 16 +-
src/atom_vec_sphere.cpp | 41 ++
src/atom_vec_sphere.h | 2 +
src/cfd_regionmodel_none.cpp | 4 +-
src/change_box.cpp | 1 -
src/cohesion_model_sjkr.h | 9 +-
src/cohesion_model_sjkr2.h | 11 +-
src/compute_angle_local.cpp | 4 +-
src/compute_bond_local.cpp | 3 +-
src/compute_cluster_atom.cpp | 5 +-
src/compute_dihedral_local.cpp | 9 +-
src/compute_gyration_molecule.cpp | 2 +-
src/compute_improper_local.cpp | 4 +-
src/compute_pair_gran_local.cpp | 10 +-
src/compute_property_local.cpp | 5 +-
src/compute_reduce.cpp | 26 +
src/compute_reduce.h | 8 +
src/compute_temp_profile.cpp | 3 +-
src/contact_interface.h | 22 +-
src/contact_models.h | 11 +
src/container_base.h | 2 +-
src/custom_value_tracker.h | 1 +
src/custom_value_tracker_I.h | 9 +
src/debug_liggghts.h | 5 +
src/domain.cpp | 2 +-
src/dump.cpp | 2 +-
src/dump_atom_vtk.cpp | 20 +-
src/dump_atom_vtk.h | 35 +-
src/dump_custom.cpp | 1 +
src/dump_dcd.cpp | 2 +-
src/dump_image.cpp | 8 +-
src/dump_mesh_vtk.cpp | 7 +-
src/fix.h | 16 +
src/fix_adapt.cpp | 13 +-
src/fix_ave_euler.cpp | 4 +-
src/fix_ave_spatial.cpp | 103 +++
src/fix_ave_spatial.h | 4 +
src/fix_box_relax.cpp | 12 +-
src/fix_cfd_coupling_convection.cpp | 45 +-
src/fix_cfd_coupling_force.cpp | 43 +-
src/fix_cfd_coupling_force.h | 3 +-
src/fix_cfd_coupling_force_implicit.cpp | 11 +-
src/fix_check_timestep_gran.cpp | 10 +-
src/fix_check_timestep_sph.cpp | 5 +-
src/fix_contact_history.cpp | 51 +-
src/fix_contact_history.h | 18 +
src/fix_contact_history_mesh.cpp | 132 +++-
src/fix_contact_history_mesh.h | 11 +-
src/fix_contact_history_mesh_I.h | 28 +-
src/fix_dummy2.h | 25 +
src/fix_gravity.cpp | 4 +-
src/fix_heat_gran.cpp | 56 +-
src/fix_heat_gran.h | 1 -
src/fix_heat_gran_conduction.cpp | 47 +-
src/fix_heat_gran_conduction.h | 6 +-
src/fix_insert.cpp | 3 +-
src/fix_insert_pack.cpp | 9 +-
src/fix_insert_stream.cpp | 6 +-
src/fix_massflow_mesh.cpp | 57 +-
src/fix_massflow_mesh.h | 4 +-
src/fix_mesh.cpp | 2 +-
src/fix_mesh_surface_stress.cpp | 3 +-
src/fix_mesh_surface_stress_servo.cpp | 3 +-
src/fix_move_mesh.cpp | 2 +-
src/fix_neighlist_mesh.cpp | 41 +-
src/fix_neighlist_mesh.h | 2 +-
src/fix_nh.cpp | 17 +-
src/fix_nve_sph.cpp | 4 +-
src/fix_particledistribution_discrete.cpp | 3 -
src/fix_press_berendsen.cpp | 4 +-
src/fix_property_atom_contact.h | 1 +
src/fix_property_atom_tracer.cpp | 12 +-
src/fix_property_global.cpp | 6 +-
src/fix_property_global.h | 2 +
src/fix_rigid.cpp | 12 +-
src/fix_rigid_small.cpp | 31 +-
src/fix_scalar_transport_equation.cpp | 49 +-
src/fix_scalar_transport_equation.h | 2 +
src/fix_shake.cpp | 6 +-
src/fix_sph.cpp | 2 +-
src/fix_sph_density_corr.cpp | 2 +-
src/fix_sph_pressure.cpp | 2 +
src/fix_sph_pressure.h | 5 +
src/fix_template_multiplespheres.cpp | 3 +-
src/fix_template_sphere.cpp | 1 -
src/fix_wall_gran.cpp | 20 +-
src/fix_wall_gran.h | 2 +-
src/fix_wall_gran_base.h | 37 +-
src/force.cpp | 8 -
src/general_container.h | 2 +-
src/global_properties.cpp | 78 +-
src/global_properties.h | 27 +-
src/image.cpp | 14 +-
src/input.cpp | 9 +-
src/input_mesh_tet.cpp | 2 -
src/input_mesh_tri.cpp | 1 -
src/irregular.cpp | 5 +-
src/lammps.cpp | 20 +-
src/library_cfd_coupling.cpp | 5 +-
src/math_extra_liggghts.h | 17 +
src/memory.h | 4 +-
src/mesh_mover.cpp | 12 +-
src/min.cpp | 4 -
src/min_linesearch.cpp | 4 +-
src/modified_andrew.cpp | 4 +-
src/modify.cpp | 6 +-
src/multi_node_mesh_I.h | 10 +-
src/multi_node_mesh_parallel_I.h | 15 +-
src/my_page.h | 25 +-
src/neigh_gran.cpp | 186 +++++
src/neigh_request.cpp | 15 +-
src/neigh_request.h | 4 +-
src/neigh_respa.cpp | 12 +-
src/neigh_stencil.cpp | 6 +-
src/neighbor.cpp | 20 +-
src/neighbor.h | 1 +
src/normal_model_hertz.h | 19 +-
src/normal_model_hertz_stiffness.h | 16 +-
src/normal_model_hooke.h | 21 +-
src/normal_model_hooke_hysteresis.h | 15 +-
src/normal_model_hooke_stiffness.h | 19 +-
src/pair.cpp | 76 +-
src/pair_born_coul_wolf.cpp | 4 +-
src/pair_coul_wolf.cpp | 19 +-
src/pair_gauss.cpp | 2 +-
src/pair_gran.cpp | 35 +
src/pair_gran.h | 15 +-
src/pair_gran_base.h | 42 +-
src/pair_hybrid.cpp | 20 +-
src/pair_lj_smooth_linear.cpp | 2 +-
src/pair_sph.cpp | 37 +-
src/primitive_wall.h | 2 +-
src/probability_distribution.h | 26 +-
src/procmap.cpp | 2 +-
src/property_registry.cpp | 34 +-
src/property_registry.h | 12 +-
src/read_data.cpp | 46 +-
src/read_restart.cpp | 6 +-
src/region.cpp | 6 +-
src/region_wedge.cpp | 42 +-
src/rolling_model_cdt.h | 2 +-
src/rolling_model_epsd.h | 10 +-
src/rolling_model_epsd2.h | 8 +-
src/set.cpp | 18 +-
src/settings.h | 37 +-
src/style_contact_model.blacklist | 0
src/surface_mesh_I.h | 18 +-
src/tangential_model_history.h | 8 +-
src/tangential_model_no_history.h | 2 +-
src/tracking_mesh_I.h | 2 +-
src/tri_mesh_I.h | 1 +
src/universe.cpp | 2 +-
src/variable.cpp | 22 +-
src/vector_liggghts.h | 4 +-
src/version_liggghts.h | 4 +
src/version_liggghts.txt | 4 +
src/volume_mesh_I.h | 5 +-
src/write_data.cpp | 60 +-
src/write_data.h | 2 +
src/write_restart.cpp | 2 +-
216 files changed, 2287 insertions(+), 1450 deletions(-)
create mode 100644 debian/patches/05_vtk6_support.patch
create mode 100644 debian/tests/control
create mode 100644 debian/tests/heat
delete mode 100644 examples/LIGGGHTS/Tutorials_public/chute_wear/run.config
delete mode 100644 examples/LIGGGHTS/Tutorials_public/cohesion/run.config
delete mode 100644 examples/LIGGGHTS/Tutorials_public/contactModels/run.config
delete mode 100644 examples/LIGGGHTS/Tutorials_public/conveyor/run.config
delete mode 100644 examples/LIGGGHTS/Tutorials_public/heatTransfer_1/run.config
delete mode 100644 examples/LIGGGHTS/Tutorials_public/heatTransfer_2/run.config
delete mode 100644 examples/LIGGGHTS/Tutorials_public/hysteresis/run.config
delete mode 100644 examples/LIGGGHTS/Tutorials_public/insert_stream/run.config
delete mode 100644 examples/LIGGGHTS/Tutorials_public/meshGran/run.config
delete mode 100644 examples/LIGGGHTS/Tutorials_public/mesh_tet/run.config
delete mode 100644 examples/LIGGGHTS/Tutorials_public/movingMeshGran/run.config
delete mode 100644 examples/LIGGGHTS/Tutorials_public/packing/run.config
delete mode 100644 examples/LIGGGHTS/Tutorials_public/sph_1/run.config
delete mode 100644 examples/LIGGGHTS/Tutorials_public/sph_2/run.config
copy src/MAKE/{Makefile.fedora => Makefile.clang} (95%)
mode change 100755 => 100644 src/MAKE/Makefile.g++
mode change 100755 => 100644 src/MAKE/Makefile.g++3
mode change 100755 => 100644 src/MAKE/Makefile.linux
mode change 100755 => 100644 src/MAKE/Makefile.mac
mode change 100755 => 100644 src/MAKE/Makefile.mac_mpi
mode change 100755 => 100644 src/MAKE/Makefile.odin
mode change 100755 => 100644 src/MAKE/Makefile.serial
mode change 100755 => 100644 src/MAKE/Makefile.tesla
create mode 100644 src/fix_dummy2.h
create mode 100644 src/fix_property_atom_contact.h
delete mode 100644 src/style_contact_model.blacklist
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