[ovito] branch master updated (bb2c415 -> a7f7737)
Anton Gladky
gladk at moszumanska.debian.org
Tue Apr 29 21:09:56 UTC 2014
This is an automated email from the git hooks/post-receive script.
gladk pushed a change to branch master
in repository ovito.
from bb2c415 Fix typo.
new ce147a6 Disable Tachyon on powerpc.
new 7003db6 Do not build CRYSTALANALYSIS on armel because of absent cgal.
new ef70580 Update changelog.
new 69bb9db Clean changelog.
adds aa60949 Imported Upstream version 2.3.3~beta1~git7e66e42
new a853cbe Upstream version 2.3.3~beta1~git7e66e42.
new a7f7737 Update changelog.
The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.gitignore | 1 -
CMakeLists.txt | 12 +-
cmake/Documentation.cmake | 71 +-
cmake/Plugins.cmake | 10 +-
cmake/Version.cmake | 4 +-
debian/changelog | 9 +
debian/rules | 7 +-
doc/develop/Doxyfile | 2280 ++++++
doc/develop/build_macosx_howto.txt | 3 +-
doc/develop/build_windows_howto.txt | 4 +-
doc/develop/feature_requests.txt | 2 +
doc/develop/graphics/logo_small.png | Bin 0 -> 8730 bytes
doc/manual/Appendix_License_muparser.docbook | 38 +
doc/manual/Appendix_License_netcdf.docbook | 24 +
doc/manual/Appendix_License_tachyon.docbook | 42 +
doc/manual/Chapter_Credits.docbook | 19 +
doc/manual/Manual.docbook | 6 +
doc/manual/development/Chapter_Development.docbook | 8 +-
.../images/modifiers/compute_property_panel.png | Bin 32608 -> 36516 bytes
.../modifiers/particles/compute_property.docbook | 81 +-
doc/manual/scripting/reference/modifiers.docbook | 39 +
doc/manual/scripting/scene_objects.docbook | 2 +-
src/3rdparty/botan/CMakeLists.txt | 2 +-
src/3rdparty/muparser/CMakeLists.txt | 2 +-
src/3rdparty/qcustomplot/CMakeLists.txt | 2 +-
{tests/files => src/3rdparty/tachyon}/.DS_Store | Bin 6148 -> 6148 bytes
src/3rdparty/tachyon/CMakeLists.txt | 86 +
src/3rdparty/tachyon/Changes | 1135 +++
.../tachyonlib => 3rdparty/tachyon}/Copyright | 4 +-
src/3rdparty/tachyon/README | 106 +
.../tachyon/tachyon/.#api.c.1.158} | 467 +-
.../tachyon/tachyon/.#api.c.1.164} | 404 +-
.../tachyon/tachyon/.#camera.c.1.49} | 114 +-
.../tachyon/tachyon/.#imap.c.1.28} | 80 +-
.../tachyon/tachyon/.#render.c.1.109} | 66 +-
.../tachyon/tachyon/.#shade.c.1.104} | 124 +-
src/3rdparty/tachyon/tachyon/.#shade.c.1.70 | 428 +
.../tachyon/tachyon/.#shade.c.1.84} | 356 +-
.../tachyon/tachyon/.#tachyon.h.1.108} | 240 +-
src/3rdparty/tachyon/tachyon/.#tachyon.h.1.87 | 447 ++
.../tachyon/tachyon/.#trace.c.1.124} | 64 +-
src/3rdparty/tachyon/tachyon/.#trace.c.1.126 | 362 +
.../tachyon/tachyon/.#trace.h.1.33} | 7 +-
src/3rdparty/tachyon/tachyon/.#types.h.1.117 | 365 +
.../3rdparty/tachyon/tachyon}/.DS_Store | Bin 6148 -> 6148 bytes
.../tachyonlib => 3rdparty/tachyon/tachyon}/api.c | 1 -
.../tachyon/tachyon}/apigeom.c | 4 +-
.../tachyon/tachyon}/apitrigeom.c | 18 +-
.../tachyon/tachyon}/apitrigeom.h | 0
.../tachyonlib => 3rdparty/tachyon/tachyon}/box.c | 8 +-
.../tachyonlib => 3rdparty/tachyon/tachyon}/box.h | 0
.../tachyon/tachyon}/camera.c | 24 +-
.../tachyon/tachyon}/camera.h | 0
.../tachyonlib => 3rdparty/tachyon/tachyon}/cone.c | 0
.../tachyonlib => 3rdparty/tachyon/tachyon}/cone.h | 0
.../tachyon/tachyon}/coordsys.c | 18 +-
.../tachyon/tachyon}/coordsys.h | 0
.../tachyon/tachyon}/cylinder.c | 28 +-
.../tachyon/tachyon}/cylinder.h | 0
.../tachyon/tachyon}/extvol.c | 8 +-
.../tachyon/tachyon}/extvol.h | 0
.../tachyon/tachyon}/global.c | 0
.../tachyon/tachyon}/global.h | 0
.../tachyonlib => 3rdparty/tachyon/tachyon}/grid.c | 0
.../tachyonlib => 3rdparty/tachyon/tachyon}/grid.h | 0
.../tachyonlib => 3rdparty/tachyon/tachyon}/hash.c | 0
.../tachyonlib => 3rdparty/tachyon/tachyon}/hash.h | 0
.../tachyon/tachyon}/image.h | 0
.../tachyon/tachyon}/imageio.c | 28 +-
.../tachyon/tachyon}/imageio.h | 0
.../tachyonlib => 3rdparty/tachyon/tachyon}/imap.c | 10 +-
.../tachyonlib => 3rdparty/tachyon/tachyon}/imap.h | 0
.../tachyon/tachyon}/intersect.c | 20 +-
.../tachyon/tachyon}/intersect.h | 0
.../tachyonlib => 3rdparty/tachyon/tachyon}/jpeg.c | 0
.../tachyonlib => 3rdparty/tachyon/tachyon}/jpeg.h | 0
.../tachyon/tachyon}/light.c | 12 +-
.../tachyon/tachyon}/light.h | 0
.../tachyon/tachyon}/macros.h | 0
.../tachyon/tachyon}/parallel.c | 60 +-
.../tachyon/tachyon}/parallel.h | 3 +-
.../tachyon/tachyon}/parvol.c | 8 +-
.../tachyon/tachyon}/parvol.h | 0
.../tachyon/tachyon}/plane.c | 0
.../tachyon/tachyon}/plane.h | 0
.../tachyon/tachyon}/pngfile.c | 0
.../tachyon/tachyon}/pngfile.h | 0
.../tachyonlib => 3rdparty/tachyon/tachyon}/ppm.c | 26 +-
.../tachyonlib => 3rdparty/tachyon/tachyon}/ppm.h | 0
.../tachyonlib => 3rdparty/tachyon/tachyon}/psd.c | 0
.../tachyonlib => 3rdparty/tachyon/tachyon}/psd.h | 0
.../tachyon/tachyon}/quadric.c | 6 +-
.../tachyon/tachyon}/quadric.h | 0
.../tachyon/tachyon}/render.c | 64 +-
.../tachyon/tachyon}/render.h | 0
.../tachyonlib => 3rdparty/tachyon/tachyon}/ring.c | 4 +-
.../tachyonlib => 3rdparty/tachyon/tachyon}/ring.h | 0
.../tachyon/tachyon}/sgirgb.c | 0
.../tachyon/tachyon}/sgirgb.h | 0
.../tachyon/tachyon}/shade.c | 22 +-
.../tachyon/tachyon}/shade.h | 0
.../tachyon/tachyon}/sphere.c | 6 +-
.../tachyon/tachyon}/sphere.h | 0
.../tachyon/tachyon}/tachyon.h | 22 +-
.../tachyon/tachyon}/tachyon_dep.h | 0
.../tachyon/tachyon}/texture.c | 50 +-
.../tachyon/tachyon}/texture.h | 0
.../tachyon/tachyon}/tgafile.c | 0
.../tachyon/tachyon}/tgafile.h | 0
.../tachyon/tachyon}/threads.c | 278 +-
.../tachyon/tachyon}/threads.h | 32 +-
src/3rdparty/tachyon/tachyon/trace.c | 381 +
.../tachyon/tachyon}/trace.h | 9 +-
.../tachyon/tachyon}/triangle.c | 10 +-
.../tachyon/tachyon}/triangle.h | 0
.../tachyonlib => 3rdparty/tachyon/tachyon}/ui.c | 0
.../tachyonlib => 3rdparty/tachyon/tachyon}/ui.h | 0
.../tachyonlib => 3rdparty/tachyon/tachyon}/util.c | 2 +-
.../tachyonlib => 3rdparty/tachyon/tachyon}/util.h | 20 +-
.../tachyon/tachyon}/vector.c | 6 +-
.../tachyon/tachyon}/vector.h | 0
.../tachyonlib => 3rdparty/tachyon/tachyon}/vol.c | 22 +-
.../tachyonlib => 3rdparty/tachyon/tachyon}/vol.h | 0
.../tachyon/tachyon}/winbmp.c | 0
.../tachyon/tachyon}/winbmp.h | 0
src/3rdparty/tachyon/unix/.#Make-arch.1.134 | 1287 +++
src/3rdparty/tachyon/unix/.#Make-arch.1.148 | 1349 ++++
src/3rdparty/tachyon/unix/.#Make-arch.1.157 | 1440 ++++
.../files => src/3rdparty/tachyon/unix}/.DS_Store | Bin 6148 -> 6148 bytes
src/3rdparty/tachyon/unix/Make-arch | 1732 +++++
src/3rdparty/tachyon/unix/Make-config | 265 +
src/3rdparty/tachyon/unix/Make-distrib | 38 +
src/3rdparty/tachyon/unix/Make-opengl | 67 +
src/3rdparty/tachyon/unix/Makefile | 386 +
src/3rdparty/tachyon/unix/Makefile.msvc | 3843 +++++++++
src/3rdparty/tachyon/unix/README | 180 +
src/CMakeLists.txt | 1 +
src/base/Base.h | 4 +
src/base/io/gzdevice/qtiocompressor.cpp | 5 +
src/base/io/gzdevice/qtiocompressor.h | 4 +
src/base/linalg/AffineTransformation.h | 2 +-
src/base/linalg/Box2.h | 2 +-
src/base/linalg/Box3.h | 17 +-
src/base/linalg/LinAlg.h | 3 +-
src/base/linalg/Matrix3.h | 2 +-
src/base/linalg/Matrix4.h | 2 +-
src/base/linalg/Plane.h | 2 +-
src/base/linalg/Point2.h | 2 +-
src/base/linalg/Point3.h | 2 +-
src/base/linalg/Quaternion.h | 2 +-
src/base/linalg/Ray.h | 2 +-
src/base/linalg/Rotation.h | 2 +-
src/base/linalg/Scaling.h | 2 +-
src/base/linalg/Tensor.h | 5 +
src/base/linalg/Vector2.h | 2 +-
src/base/linalg/Vector3.h | 2 +-
src/base/linalg/Vector4.h | 2 +-
src/base/utilities/Color.h | 2 +-
src/core/CMakeLists.txt | 8 +-
src/core/animation/controller/LookAtController.h | 13 -
.../controller/TransformationController.h | 18 -
src/core/dataset/DataSet.cpp | 6 +-
src/core/dataset/DataSetContainer.h | 2 +-
.../dataset/importexport/ImportExportManager.cpp | 4 +-
.../dataset/importexport/LinkedFileImporter.cpp | 6 +-
src/core/dataset/importexport/LinkedFileImporter.h | 6 +-
src/core/dataset/importexport/LinkedFileObject.cpp | 16 +-
src/core/dataset/importexport/LinkedFileObject.h | 6 +-
.../importexport/LinkedFileObjectEditor.cpp | 6 +-
.../dataset/importexport/LinkedFileObjectEditor.h | 4 +-
src/core/gui/actions/FileActions.cpp | 8 +-
src/core/gui/actions/ViewportModeAction.cpp | 4 +-
src/core/gui/app/Application.cpp | 18 +-
src/core/gui/app/Application.h | 5 +-
src/core/gui/app/CommandLineParser.cpp | 168 -
src/core/gui/app/CommandLineParser.h | 162 -
src/core/gui/dialogs/AdjustCameraDialog.cpp | 22 +-
src/core/gui/dialogs/AnimationSettingsDialog.cpp | 8 +-
src/core/gui/dialogs/ApplicationSettingsDialog.cpp | 7 +-
src/core/gui/dialogs/GeneralSettingsPage.cpp | 87 +
...iewportSettingsPage.h => GeneralSettingsPage.h} | 38 +-
src/core/gui/dialogs/HistoryFileDialog.cpp | 8 +
src/core/gui/dialogs/ImportRemoteFileDialog.cpp | 4 +-
.../gui/dialogs/RemoteAuthenticationDialog.cpp | 4 +-
src/core/gui/dialogs/SaveImageFileDialog.cpp | 4 +-
src/core/gui/dialogs/ViewportSettingsPage.cpp | 118 +-
src/core/gui/dialogs/ViewportSettingsPage.h | 18 +-
.../gui/mainwin/cmdpanel/ModificationListItem.cpp | 8 +-
.../gui/mainwin/cmdpanel/ModificationListModel.cpp | 12 +-
.../gui/mainwin/cmdpanel/ModificationListModel.h | 2 +-
.../gui/mainwin/cmdpanel/ModifyCommandPage.cpp | 115 +-
.../gui/mainwin/cmdpanel/UtilityCommandPage.cpp | 6 +-
.../gui/properties/BooleanActionParameterUI.cpp | 10 +-
.../gui/properties/BooleanGroupBoxParameterUI.cpp | 8 +-
src/core/gui/properties/BooleanParameterUI.cpp | 10 +-
src/core/gui/properties/BooleanParameterUI.h | 4 +-
.../properties/BooleanRadioButtonParameterUI.cpp | 8 +-
.../gui/properties/BooleanRadioButtonParameterUI.h | 2 +-
src/core/gui/properties/ColorParameterUI.cpp | 6 +-
src/core/gui/properties/ColorParameterUI.h | 2 +-
src/core/gui/properties/FilenameParameterUI.cpp | 41 +-
src/core/gui/properties/FilenameParameterUI.h | 20 +-
.../properties/IntegerRadioButtonParameterUI.cpp | 16 +-
src/core/gui/properties/NumericalParameterUI.cpp | 24 +-
src/core/gui/properties/NumericalParameterUI.h | 2 +-
src/core/gui/properties/PropertiesPanel.h | 5 +-
.../gui/properties/RefTargetListParameterUI.cpp | 18 +-
src/core/gui/properties/RefTargetListParameterUI.h | 6 +-
src/core/gui/properties/StringParameterUI.cpp | 9 +-
src/core/gui/properties/StringParameterUI.h | 2 +-
src/core/gui/properties/SubObjectParameterUI.cpp | 2 +-
src/core/gui/properties/SubObjectParameterUI.h | 2 +-
.../gui/properties/VariantComboBoxParameterUI.cpp | 6 +-
.../gui/properties/VariantComboBoxParameterUI.h | 2 +-
.../widgets/animation/AnimationFramesToolButton.h | 2 +-
.../{ObjectStatusWidget.cpp => StatusWidget.cpp} | 14 +-
.../{ObjectStatusWidget.h => StatusWidget.h} | 28 +-
.../gui/widgets/general/AutocompleteLineEdit.cpp | 2 +-
src/core/gui/widgets/general/ColorPickerWidget.cpp | 2 +-
src/core/gui/widgets/general/RolloutContainer.cpp | 6 +-
.../gui/widgets/rendering/FrameBufferWidget.cpp | 8 +-
.../widgets/selection/SceneNodeSelectionBox.cpp | 15 +-
.../gui/widgets/selection/SceneNodeSelectionBox.h | 3 +
.../gui/widgets/selection/SceneNodesListModel.cpp | 4 +-
src/core/object/OvitoObject.h | 170 +-
src/core/object/OvitoObjectReference.h | 82 +-
src/core/plugins/autostart/AutoStartObject.h | 4 +-
src/core/reference/CloneHelper.h | 4 +-
src/core/reference/PropertyField.h | 22 -
src/core/reference/RefMaker.cpp | 28 +-
src/core/reference/RefMaker.h | 22 +-
src/core/reference/RefTarget.cpp | 28 +-
src/core/rendering/ArrowPrimitive.h | 2 +-
src/core/rendering/RenderSettings.cpp | 2 +-
src/core/rendering/RenderSettingsEditor.cpp | 18 +-
.../rendering/viewport/OpenGLArrowPrimitive.cpp | 12 +-
.../rendering/viewport/OpenGLImagePrimitive.cpp | 31 +-
src/core/rendering/viewport/OpenGLImagePrimitive.h | 16 +-
.../rendering/viewport/OpenGLParticlePrimitive.cpp | 35 +-
.../rendering/viewport/OpenGLParticlePrimitive.h | 14 +-
.../viewport/OpenGLSharedResource.cpp} | 16 +-
.../viewport/OpenGLSharedResource.h} | 12 +-
.../rendering/viewport/OpenGLTextPrimitive.cpp | 31 +-
src/core/rendering/viewport/OpenGLTextPrimitive.h | 16 +-
src/core/rendering/viewport/OpenGLTexture.h | 88 +
.../rendering/viewport/ViewportSceneRenderer.cpp | 2 +-
src/core/resources/core.qrc | 4 +
.../mainwin/command_panel/about_panel.html | 7 +-
.../resources/mainwin/settings/vertical_axis.svg | 563 ++
.../resources/mainwin/settings/vertical_axis_x.png | Bin 0 -> 1194 bytes
.../resources/mainwin/settings/vertical_axis_y.png | Bin 0 -> 1235 bytes
.../resources/mainwin/settings/vertical_axis_z.png | Bin 0 -> 1109 bytes
src/core/scene/ObjectNode.cpp | 8 +-
src/core/scene/ObjectNode.h | 16 +-
src/core/scene/SceneNode.cpp | 4 +-
src/core/scene/SceneNode.h | 25 +-
src/core/scene/SelectionSet.h | 5 -
src/core/scene/objects/SceneObject.cpp | 2 +-
src/core/scene/objects/SceneObject.h | 4 +-
src/core/scene/objects/camera/CameraObject.cpp | 4 +-
src/core/scene/pipeline/Modifier.h | 25 +-
src/core/scene/pipeline/ModifierApplication.h | 40 +-
src/core/scene/pipeline/PipelineFlowState.h | 18 +-
src/core/scene/pipeline/PipelineObject.cpp | 22 +-
src/core/scene/pipeline/PipelineObject.h | 5 -
.../pipeline/PipelineStatus.h} | 51 +-
src/core/utilities/concurrent/TaskManager.cpp | 28 +-
src/core/utilities/io/ObjectLoadStream.cpp | 6 +-
src/core/utilities/io/ObjectLoadStream.h | 82 +-
src/core/utilities/io/SftpJob.cpp | 16 +-
src/core/viewport/Viewport.cpp | 2 +-
src/core/viewport/ViewportConfiguration.cpp | 12 +-
src/core/viewport/ViewportMenu.cpp | 14 +-
src/core/viewport/ViewportSettings.cpp | 50 +-
src/core/viewport/ViewportSettings.h | 8 +-
src/core/viewport/input/NavigationModes.cpp | 20 +-
src/core/viewport/input/XFormModes.cpp | 4 +-
src/main/Main.cpp | 2 +-
.../data/dislocations/DislocationInspector.cpp | 6 +-
.../data/dislocations/DislocationInspector.h | 2 +-
.../data/dislocations/DislocationNetwork.cpp | 2 +-
.../data/patterns/PatternCatalog.cpp | 2 +-
.../data/patterns/StructurePattern.cpp | 2 +-
.../crystalanalysis/importer/CAImporter.cpp | 26 +-
.../modifier/ConstructSurfaceModifier.cpp | 4 +-
.../modifier/ConstructSurfaceModifier.h | 2 +-
.../crystalanalysis/modifier/ShiftModifier.cpp | 10 +-
.../crystalanalysis/modifier/ShiftModifier.h | 2 +-
.../modifier/SmoothDislocationsModifier.cpp | 6 +-
.../modifier/SmoothDislocationsModifier.h | 2 +-
.../modifier/SmoothSurfaceModifier.cpp | 8 +-
.../modifier/SmoothSurfaceModifier.h | 2 +-
src/plugins/mesh/import/TriMeshImportData.cpp | 6 +-
src/plugins/netcdf/NetCDFImporter.cpp | 49 +-
src/plugins/particles/CMakeLists.txt | 1 +
src/plugins/particles/data/BondsDisplay.cpp | 21 +-
src/plugins/particles/data/BondsDisplay.h | 5 -
src/plugins/particles/data/ParticleDisplay.cpp | 27 +-
src/plugins/particles/data/ParticleDisplay.h | 5 -
.../particles/data/ParticlePropertyObject.cpp | 18 +-
.../particles/data/ParticleSelectionSet.cpp | 10 +-
src/plugins/particles/data/ParticleSelectionSet.h | 2 +-
.../particles/data/ParticleTypeProperty.cpp | 30 +-
src/plugins/particles/data/ParticleTypeProperty.h | 15 +-
src/plugins/particles/data/SimulationCell.cpp | 18 +-
.../particles/data/SimulationCellDisplay.cpp | 22 +-
src/plugins/particles/data/VectorDisplay.cpp | 17 +-
src/plugins/particles/data/VectorDisplay.h | 3 -
.../particles/exporter/OutputColumnMapping.cpp | 4 +-
.../particles/exporter/ParticleExporter.cpp | 8 +-
.../exporter/ParticleExporterSettingsDialog.cpp | 10 +-
src/plugins/particles/exporter/imd/IMDExporter.cpp | 4 +-
.../importer/InputColumnMappingDialog.cpp | 8 +-
.../particles/importer/ParticleImportTask.cpp | 32 +-
.../importer/lammps/LAMMPSBinaryDumpImporter.cpp | 2 +-
.../importer/lammps/LAMMPSTextDumpImporter.cpp | 2 +-
src/plugins/particles/importer/pdb/PDBImporter.cpp | 161 +
.../{vasp/POSCARImporter.h => pdb/PDBImporter.h} | 24 +-
.../particles/importer/vasp/POSCARImporter.cpp | 2 +-
src/plugins/particles/importer/xyz/XYZImporter.cpp | 2 +-
.../modifier/AsynchronousParticleModifier.cpp | 24 +-
.../modifier/AsynchronousParticleModifier.h | 6 +-
.../particles/modifier/ParticleModifier.cpp | 56 +-
src/plugins/particles/modifier/ParticleModifier.h | 18 +-
.../analysis/StructureIdentificationModifier.cpp | 31 +-
.../analysis/StructureIdentificationModifier.h | 49 +-
.../bondangle/BondAngleAnalysisModifier.cpp | 36 +-
.../analysis/bonds/CreateBondsModifier.cpp | 16 +-
.../modifier/analysis/bonds/CreateBondsModifier.h | 2 +-
.../centrosymmetry/CentroSymmetryModifier.cpp | 4 +-
.../centrosymmetry/CentroSymmetryModifier.h | 2 +-
.../analysis/cluster/ClusterAnalysisModifier.cpp | 4 +-
.../analysis/cluster/ClusterAnalysisModifier.h | 2 +-
.../cna/CommonNeighborAnalysisModifier.cpp | 16 +-
.../coordination/CoordinationNumberModifier.cpp | 8 +-
.../coordination/CoordinationNumberModifier.h | 2 +-
.../CalculateDisplacementsModifier.cpp | 16 +-
.../displacements/CalculateDisplacementsModifier.h | 2 +-
.../analysis/histogram/HistogramModifier.cpp | 26 +-
.../analysis/histogram/HistogramModifier.h | 2 +-
.../analysis/scatterplot/ScatterPlotModifier.cpp | 36 +-
.../analysis/scatterplot/ScatterPlotModifier.h | 2 +-
.../analysis/strain/AtomicStrainModifier.cpp | 16 +-
.../analysis/strain/AtomicStrainModifier.h | 2 +-
.../wignerseitz/WignerSeitzAnalysisModifier.cpp | 14 +-
.../wignerseitz/WignerSeitzAnalysisModifier.h | 2 +-
.../modifier/coloring/AssignColorModifier.cpp | 4 +-
.../modifier/coloring/AssignColorModifier.h | 2 +-
.../modifier/coloring/ColorCodingModifier.cpp | 20 +-
.../modifier/coloring/ColorCodingModifier.h | 5 +-
.../modifier/delete/DeleteParticlesModifier.cpp | 4 +-
.../modifier/delete/DeleteParticlesModifier.h | 2 +-
.../modifier/lighting/AmbientOcclusionModifier.cpp | 10 +-
.../modifier/lighting/AmbientOcclusionModifier.h | 2 +-
.../modifier/pbc/ShowPeriodicImagesModifier.cpp | 12 +-
.../modifier/pbc/ShowPeriodicImagesModifier.h | 2 +-
.../modifier/pbc/WrapPeriodicImagesModifier.cpp | 6 +-
.../modifier/pbc/WrapPeriodicImagesModifier.h | 2 +-
.../CreateExpressionPropertyModifier.cpp | 173 +-
.../properties/CreateExpressionPropertyModifier.h | 98 +-
.../modifier/properties/FreezePropertyModifier.cpp | 16 +-
.../modifier/properties/FreezePropertyModifier.h | 2 +-
.../modifier/selection/ClearSelectionModifier.cpp | 4 +-
.../modifier/selection/ClearSelectionModifier.h | 2 +-
.../modifier/selection/FreezeSelectionModifier.cpp | 4 +-
.../modifier/selection/FreezeSelectionModifier.h | 2 +-
.../modifier/selection/InvertSelectionModifier.cpp | 4 +-
.../modifier/selection/InvertSelectionModifier.h | 2 +-
.../modifier/selection/ManualSelectionModifier.cpp | 10 +-
.../modifier/selection/ManualSelectionModifier.h | 2 +-
.../selection/SelectExpressionModifier.cpp | 9 +-
.../modifier/selection/SelectExpressionModifier.h | 6 +-
.../selection/SelectParticleTypeModifier.cpp | 26 +-
.../selection/SelectParticleTypeModifier.h | 2 +-
.../particles/modifier/slice/SliceModifier.cpp | 18 +-
.../particles/modifier/slice/SliceModifier.h | 2 +-
.../AffineTransformationModifier.cpp | 26 +-
.../transformation/AffineTransformationModifier.h | 2 +-
.../particles/util/CutoffRadiusPresetsUI.cpp | 12 +-
src/plugins/particles/util/CutoffRadiusPresetsUI.h | 2 +-
.../particles/util/ParticleExpressionEvaluator.cpp | 4 +-
.../particles/util/ParticleInformationApplet.cpp | 8 +-
.../particles/util/ParticlePickingHelper.cpp | 48 +-
.../particles/util/ParticlePropertyParameterUI.cpp | 14 +-
.../particles/util/ParticlePropertyParameterUI.h | 2 +-
src/plugins/scripting/bindings/ViewportBinding.cpp | 2 +-
src/plugins/scripting/engine/ScriptAutostarter.cpp | 7 +-
src/plugins/scripting/engine/ScriptAutostarter.h | 2 +-
src/plugins/scripting/engine/ScriptEngine.h | 9 +-
src/plugins/tachyon/CMakeLists.txt | 60 +-
src/plugins/tachyon/renderer/TachyonRenderer.cpp | 7 +-
src/plugins/tachyon/renderer/TachyonRenderer.h | 2 +-
.../tachyon/renderer/TachyonRendererEditor.cpp | 2 +-
tests/files/4nn0.ent.pdb | 8164 ++++++++++++++++++++
tests/files/Nanotube8x3x1.pdb | 390 +
tests/files/SiShuffle.pdb | 195 +
tests/scripts/create_expression_property.js | 9 +
397 files changed, 28828 insertions(+), 3871 deletions(-)
create mode 100644 doc/develop/Doxyfile
create mode 100644 doc/develop/graphics/logo_small.png
create mode 100644 doc/manual/Appendix_License_muparser.docbook
create mode 100644 doc/manual/Appendix_License_netcdf.docbook
create mode 100644 doc/manual/Appendix_License_tachyon.docbook
copy {tests/files => src/3rdparty/tachyon}/.DS_Store (92%)
create mode 100755 src/3rdparty/tachyon/CMakeLists.txt
create mode 100644 src/3rdparty/tachyon/Changes
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon}/Copyright (93%)
create mode 100644 src/3rdparty/tachyon/README
copy src/{plugins/tachyon/tachyonlib/api.c => 3rdparty/tachyon/tachyon/.#api.c.1.158} (66%)
copy src/{plugins/tachyon/tachyonlib/api.c => 3rdparty/tachyon/tachyon/.#api.c.1.164} (70%)
copy src/{plugins/tachyon/tachyonlib/camera.c => 3rdparty/tachyon/tachyon/.#camera.c.1.49} (91%)
copy src/{plugins/tachyon/tachyonlib/imap.c => 3rdparty/tachyon/tachyon/.#imap.c.1.28} (85%)
copy src/{plugins/tachyon/tachyonlib/render.c => 3rdparty/tachyon/tachyon/.#render.c.1.109} (86%)
copy src/{plugins/tachyon/tachyonlib/shade.c => 3rdparty/tachyon/tachyon/.#shade.c.1.104} (85%)
create mode 100644 src/3rdparty/tachyon/tachyon/.#shade.c.1.70
copy src/{plugins/tachyon/tachyonlib/shade.c => 3rdparty/tachyon/tachyon/.#shade.c.1.84} (53%)
copy src/{plugins/tachyon/tachyonlib/tachyon.h => 3rdparty/tachyon/tachyon/.#tachyon.h.1.108} (81%)
create mode 100644 src/3rdparty/tachyon/tachyon/.#tachyon.h.1.87
rename src/{plugins/tachyon/tachyonlib/trace.c => 3rdparty/tachyon/tachyon/.#trace.c.1.124} (80%)
create mode 100644 src/3rdparty/tachyon/tachyon/.#trace.c.1.126
copy src/{plugins/tachyon/tachyonlib/trace.h => 3rdparty/tachyon/tachyon/.#trace.h.1.33} (81%)
create mode 100644 src/3rdparty/tachyon/tachyon/.#types.h.1.117
copy {tests/files => src/3rdparty/tachyon/tachyon}/.DS_Store (92%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/api.c (99%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/apigeom.c (98%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/apitrigeom.c (91%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/apitrigeom.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/box.c (96%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/box.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/camera.c (97%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/camera.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/cone.c (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/cone.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/coordsys.c (65%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/coordsys.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/cylinder.c (89%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/cylinder.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/extvol.c (97%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/extvol.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/global.c (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/global.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/grid.c (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/grid.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/hash.c (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/hash.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/image.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/imageio.c (94%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/imageio.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/imap.c (98%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/imap.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/intersect.c (90%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/intersect.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/jpeg.c (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/jpeg.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/light.c (96%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/light.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/macros.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/parallel.c (82%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/parallel.h (84%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/parvol.c (96%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/parvol.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/plane.c (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/plane.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/pngfile.c (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/pngfile.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/ppm.c (83%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/ppm.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/psd.c (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/psd.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/quadric.c (95%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/quadric.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/render.c (87%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/render.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/ring.c (96%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/ring.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/sgirgb.c (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/sgirgb.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/shade.c (97%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/shade.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/sphere.c (93%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/sphere.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/tachyon.h (99%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/tachyon_dep.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/texture.c (90%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/texture.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/tgafile.c (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/tgafile.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/threads.c (87%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/threads.h (93%)
create mode 100644 src/3rdparty/tachyon/tachyon/trace.c
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/trace.h (76%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/triangle.c (97%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/triangle.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/ui.c (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/ui.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/util.c (99%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/util.h (85%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/vector.c (90%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/vector.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/vol.c (92%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/vol.h (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/winbmp.c (100%)
rename src/{plugins/tachyon/tachyonlib => 3rdparty/tachyon/tachyon}/winbmp.h (100%)
create mode 100644 src/3rdparty/tachyon/unix/.#Make-arch.1.134
create mode 100644 src/3rdparty/tachyon/unix/.#Make-arch.1.148
create mode 100644 src/3rdparty/tachyon/unix/.#Make-arch.1.157
copy {tests/files => src/3rdparty/tachyon/unix}/.DS_Store (92%)
create mode 100644 src/3rdparty/tachyon/unix/Make-arch
create mode 100644 src/3rdparty/tachyon/unix/Make-config
create mode 100644 src/3rdparty/tachyon/unix/Make-distrib
create mode 100644 src/3rdparty/tachyon/unix/Make-opengl
create mode 100644 src/3rdparty/tachyon/unix/Makefile
create mode 100644 src/3rdparty/tachyon/unix/Makefile.msvc
create mode 100644 src/3rdparty/tachyon/unix/README
delete mode 100755 src/core/gui/app/CommandLineParser.cpp
delete mode 100755 src/core/gui/app/CommandLineParser.h
create mode 100755 src/core/gui/dialogs/GeneralSettingsPage.cpp
copy src/core/gui/dialogs/{ViewportSettingsPage.h => GeneralSettingsPage.h} (55%)
rename src/core/gui/widgets/display/{ObjectStatusWidget.cpp => StatusWidget.cpp} (89%)
rename src/core/gui/widgets/display/{ObjectStatusWidget.h => StatusWidget.h} (71%)
rename src/core/{utilities/opengl/SharedOpenGLResource.cpp => rendering/viewport/OpenGLSharedResource.cpp} (92%)
rename src/core/{utilities/opengl/SharedOpenGLResource.h => rendering/viewport/OpenGLSharedResource.h} (86%)
create mode 100755 src/core/rendering/viewport/OpenGLTexture.h
create mode 100644 src/core/resources/mainwin/settings/vertical_axis.svg
create mode 100644 src/core/resources/mainwin/settings/vertical_axis_x.png
create mode 100644 src/core/resources/mainwin/settings/vertical_axis_y.png
create mode 100644 src/core/resources/mainwin/settings/vertical_axis_z.png
rename src/core/{utilities/ObjectStatus.h => scene/pipeline/PipelineStatus.h} (63%)
create mode 100755 src/plugins/particles/importer/pdb/PDBImporter.cpp
copy src/plugins/particles/importer/{vasp/POSCARImporter.h => pdb/PDBImporter.h} (78%)
create mode 100644 tests/files/4nn0.ent.pdb
create mode 100644 tests/files/Nanotube8x3x1.pdb
create mode 100644 tests/files/SiShuffle.pdb
create mode 100644 tests/scripts/create_expression_property.js
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