[lmfit-py] branch master updated (4e271d7 -> 2f59370)
Frédéric-Emmanuel Picca
picca at moszumanska.debian.org
Sun Aug 31 12:33:34 UTC 2014
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picca pushed a change to branch master
in repository lmfit-py.
from 4e271d7 fix the copyright
new 05314c4 update the Files-Excluded for 0.8.0~rc2 version
new ea36651 Imported Upstream version 0.8.0~rc2+dfsg.1
new bd3a54c Merge tag 'upstream/0.8.0_rc2+dfsg.1'
new fe4a792 remove all patches (applyed upstream)
new 494a02f update the changelog
new c1df402 fix description (lintian)
new a196d39 add the doc-base
new 2f59370 changelog updated
The 8 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.travis.yml | 58 +-
THANKS.txt | 12 +-
debian/changelog | 8 +
debian/control | 2 +-
debian/copyright | 2 +-
...the-internal-Ipython.sphinxext-extensions.patch | 23 -
debian/patches/series | 1 -
debian/python-lmfit-doc.doc-base | 9 +
doc/Makefile | 22 +-
doc/_images/conf_interval1.png | Bin 0 -> 21741 bytes
doc/_images/conf_interval1a.png | Bin 0 -> 19853 bytes
doc/_images/conf_interval2.png | Bin 0 -> 16793 bytes
doc/_images/model_eval.png | Bin 0 -> 21967 bytes
doc/_images/model_fit1.png | Bin 0 -> 29579 bytes
doc/_images/model_fit2.png | Bin 0 -> 33474 bytes
doc/_images/models_doc1.png | Bin 0 -> 32292 bytes
doc/_images/models_doc2.png | Bin 0 -> 33112 bytes
doc/_images/models_nistgauss.png | Bin 0 -> 44692 bytes
doc/_images/models_nistgauss2.png | Bin 0 -> 45887 bytes
doc/_images/models_peak1.png | Bin 0 -> 161561 bytes
doc/_images/models_peak2.png | Bin 0 -> 175732 bytes
doc/_images/models_peak3.png | Bin 0 -> 159332 bytes
doc/_images/models_peak4.png | Bin 0 -> 164721 bytes
doc/_images/models_stepfit.png | Bin 0 -> 31966 bytes
doc/_templates/indexsidebar.html | 21 +-
doc/_templates/layout.html | 58 ++
doc/bounds.rst | 16 +-
doc/builtin_models.rst | 782 +++++++++++++++++
doc/conf.py | 80 +-
doc/confidence.rst | 169 ++--
doc/constraints.rst | 6 +-
doc/contents.rst | 15 +
doc/fitting.rst | 71 +-
doc/index.rst | 102 ++-
doc/installation.rst | 75 +-
doc/intro.rst | 150 ++++
doc/model.rst | 572 ++++++++++++
doc/models1d.rst | 80 --
doc/models1d_doc1.png | Bin 29771 -> 0 bytes
doc/parameters.rst | 160 +---
doc/{ => sphinx/mathjax}/conf.py | 80 +-
doc/{ => sphinx/pngmath}/conf.py | 78 +-
doc/sphinx/theme/lmfitdoc/layout.html | 14 +
doc/sphinx/theme/lmfitdoc/static/contents.png | Bin 0 -> 202 bytes
doc/sphinx/theme/lmfitdoc/static/lmfitdoc.css_t | 348 ++++++++
doc/sphinx/theme/lmfitdoc/static/navigation.png | Bin 0 -> 218 bytes
doc/sphinx/theme/lmfitdoc/theme.conf | 4 +
examples/{NIST_STRD/Gauss2.dat => NIST_Gauss2.dat} | 120 +--
examples/{simple.py => doc_basic.py} | 4 +-
examples/doc_model1.py | 25 +
examples/doc_model2.py | 29 +
examples/doc_nistgauss.py | 36 +
examples/doc_nistgauss2.py | 40 +
examples/doc_stepmodel.py | 28 +
examples/example_anneal.py | 63 --
examples/example_covar.py | 8 +-
examples/example_peakmodel.py | 2 +-
examples/example_stepmodel.py | 28 -
examples/fit_pvoigt.py | 10 +-
examples/fit_pvoigt2.py | 18 +-
examples/fit_pvoigt_NelderMead.py | 11 +-
examples/fit_pvoigt_NelderMead2.py | 10 +-
examples/fit_with_algebraic_constraint.py | 16 +-
examples/m1.py | 2 +-
examples/model1d_doc1.py | 2 +-
examples/model1d_doc2.py | 2 +-
examples/models_doc1.py | 47 +
examples/models_doc2.py | 30 +
examples/peakfit_1.py | 6 +-
examples/{fit_NIST.py => test_NIST_Strd.py} | 22 +-
examples/test_peak.dat | 404 +++++++++
examples/use_models1d.py | 4 +-
lmfit/__init__.py | 11 +-
lmfit/asteval.py | 159 ++--
lmfit/astutils.py | 123 +--
lmfit/confidence.py | 27 +-
lmfit/lineshapes.py | 243 ++++++
lmfit/minimizer.py | 69 +-
lmfit/model.py | 365 +++++---
lmfit/models.py | 334 +++++++
lmfit/{models1d.py => old_models1d.py} | 0
lmfit/parameter.py | 8 +-
lmfit/printfuncs.py | 60 +-
lmfit/specified_models.py | 196 -----
lmfit/uncertainties/test_umath.py | 294 -------
lmfit/uncertainties/test_uncertainties.py | 972 ---------------------
lmfit/uncertainties/umath.py | 22 +-
lmfit/uncertainties/unumpy/__init__.py | 82 --
lmfit/uncertainties/unumpy/core.py | 612 -------------
lmfit/uncertainties/unumpy/test_ulinalg.py | 87 --
lmfit/uncertainties/unumpy/test_unumpy.py | 265 ------
lmfit/uncertainties/unumpy/ulinalg.py | 17 -
lmfit/utilfuncs.py | 86 --
requirements.txt | 3 +
setup.py | 2 +-
{examples => tests}/NISTModels.py | 6 +-
{examples => tests}/NIST_STRD/Bennett5.dat | 0
{examples => tests}/NIST_STRD/BoxBOD.dat | 0
{examples => tests}/NIST_STRD/Chwirut1.dat | 0
{examples => tests}/NIST_STRD/Chwirut2.dat | 0
{examples => tests}/NIST_STRD/DanWood.dat | 0
{examples => tests}/NIST_STRD/ENSO.dat | 0
{examples => tests}/NIST_STRD/Eckerle4.dat | 0
{examples => tests}/NIST_STRD/Gauss1.dat | 0
{examples => tests}/NIST_STRD/Gauss2.dat | 0
{examples => tests}/NIST_STRD/Gauss3.dat | 0
{examples => tests}/NIST_STRD/Hahn1.dat | 0
{examples => tests}/NIST_STRD/Kirby2.dat | 0
{examples => tests}/NIST_STRD/Lanczos1.dat | 0
{examples => tests}/NIST_STRD/Lanczos2.dat | 0
{examples => tests}/NIST_STRD/Lanczos3.dat | 0
{examples => tests}/NIST_STRD/MGH09.dat | 0
{examples => tests}/NIST_STRD/MGH10.dat | 0
{examples => tests}/NIST_STRD/MGH17.dat | 0
{examples => tests}/NIST_STRD/Misra1a.dat | 0
{examples => tests}/NIST_STRD/Misra1b.dat | 0
{examples => tests}/NIST_STRD/Misra1c.dat | 0
{examples => tests}/NIST_STRD/Misra1d.dat | 0
{examples => tests}/NIST_STRD/Models | 0
{examples => tests}/NIST_STRD/Nelson.dat | 0
{examples => tests}/NIST_STRD/Rat42.dat | 0
{examples => tests}/NIST_STRD/Rat43.dat | 0
{examples => tests}/NIST_STRD/Roszman1.dat | 0
{examples => tests}/NIST_STRD/Thurber.dat | 0
tests/lmfit_testutils.py | 18 +
tests/test_1variable.py | 46 +-
tests/test_NIST_Strd.py | 268 ++++++
tests/test_algebraic_constraint.py | 12 +-
tests/test_algebraic_constraint2.py | 24 +-
tests/test_basicfit.py | 45 +
tests/test_bounds.py | 54 ++
tests/test_model.py | 130 ++-
tests/test_multidatasets.py | 76 ++
tests/test_nose.py | 14 +-
tests/test_stepmodel.py | 59 ++
135 files changed, 4822 insertions(+), 3952 deletions(-)
delete mode 100644 debian/patches/0001-use-the-internal-Ipython.sphinxext-extensions.patch
delete mode 100644 debian/patches/series
create mode 100644 debian/python-lmfit-doc.doc-base
create mode 100644 doc/_images/conf_interval1.png
create mode 100644 doc/_images/conf_interval1a.png
create mode 100644 doc/_images/conf_interval2.png
create mode 100644 doc/_images/model_eval.png
create mode 100644 doc/_images/model_fit1.png
create mode 100644 doc/_images/model_fit2.png
create mode 100644 doc/_images/models_doc1.png
create mode 100644 doc/_images/models_doc2.png
create mode 100644 doc/_images/models_nistgauss.png
create mode 100644 doc/_images/models_nistgauss2.png
create mode 100644 doc/_images/models_peak1.png
create mode 100644 doc/_images/models_peak2.png
create mode 100644 doc/_images/models_peak3.png
create mode 100644 doc/_images/models_peak4.png
create mode 100644 doc/_images/models_stepfit.png
create mode 100644 doc/_templates/layout.html
create mode 100644 doc/builtin_models.rst
create mode 100644 doc/contents.rst
create mode 100644 doc/intro.rst
create mode 100644 doc/model.rst
delete mode 100644 doc/models1d.rst
delete mode 100644 doc/models1d_doc1.png
copy doc/{ => sphinx/mathjax}/conf.py (73%)
copy doc/{ => sphinx/pngmath}/conf.py (74%)
create mode 100644 doc/sphinx/theme/lmfitdoc/layout.html
create mode 100644 doc/sphinx/theme/lmfitdoc/static/contents.png
create mode 100644 doc/sphinx/theme/lmfitdoc/static/lmfitdoc.css_t
create mode 100644 doc/sphinx/theme/lmfitdoc/static/navigation.png
create mode 100644 doc/sphinx/theme/lmfitdoc/theme.conf
copy examples/{NIST_STRD/Gauss2.dat => NIST_Gauss2.dat} (76%)
rename examples/{simple.py => doc_basic.py} (93%)
create mode 100644 examples/doc_model1.py
create mode 100644 examples/doc_model2.py
create mode 100644 examples/doc_nistgauss.py
create mode 100644 examples/doc_nistgauss2.py
create mode 100644 examples/doc_stepmodel.py
delete mode 100644 examples/example_anneal.py
delete mode 100644 examples/example_stepmodel.py
create mode 100644 examples/models_doc1.py
create mode 100644 examples/models_doc2.py
rename examples/{fit_NIST.py => test_NIST_Strd.py} (90%)
create mode 100644 examples/test_peak.dat
create mode 100644 lmfit/lineshapes.py
create mode 100644 lmfit/models.py
rename lmfit/{models1d.py => old_models1d.py} (100%)
delete mode 100644 lmfit/specified_models.py
delete mode 100644 lmfit/uncertainties/test_umath.py
delete mode 100644 lmfit/uncertainties/test_uncertainties.py
delete mode 100644 lmfit/uncertainties/unumpy/__init__.py
delete mode 100644 lmfit/uncertainties/unumpy/core.py
delete mode 100644 lmfit/uncertainties/unumpy/test_ulinalg.py
delete mode 100644 lmfit/uncertainties/unumpy/test_unumpy.py
delete mode 100644 lmfit/uncertainties/unumpy/ulinalg.py
delete mode 100644 lmfit/utilfuncs.py
create mode 100644 requirements.txt
rename {examples => tests}/NISTModels.py (96%)
rename {examples => tests}/NIST_STRD/Bennett5.dat (100%)
rename {examples => tests}/NIST_STRD/BoxBOD.dat (100%)
rename {examples => tests}/NIST_STRD/Chwirut1.dat (100%)
rename {examples => tests}/NIST_STRD/Chwirut2.dat (100%)
rename {examples => tests}/NIST_STRD/DanWood.dat (100%)
rename {examples => tests}/NIST_STRD/ENSO.dat (100%)
rename {examples => tests}/NIST_STRD/Eckerle4.dat (100%)
rename {examples => tests}/NIST_STRD/Gauss1.dat (100%)
rename {examples => tests}/NIST_STRD/Gauss2.dat (100%)
rename {examples => tests}/NIST_STRD/Gauss3.dat (100%)
rename {examples => tests}/NIST_STRD/Hahn1.dat (100%)
rename {examples => tests}/NIST_STRD/Kirby2.dat (100%)
rename {examples => tests}/NIST_STRD/Lanczos1.dat (100%)
rename {examples => tests}/NIST_STRD/Lanczos2.dat (100%)
rename {examples => tests}/NIST_STRD/Lanczos3.dat (100%)
rename {examples => tests}/NIST_STRD/MGH09.dat (100%)
rename {examples => tests}/NIST_STRD/MGH10.dat (100%)
rename {examples => tests}/NIST_STRD/MGH17.dat (100%)
rename {examples => tests}/NIST_STRD/Misra1a.dat (100%)
rename {examples => tests}/NIST_STRD/Misra1b.dat (100%)
rename {examples => tests}/NIST_STRD/Misra1c.dat (100%)
rename {examples => tests}/NIST_STRD/Misra1d.dat (100%)
rename {examples => tests}/NIST_STRD/Models (100%)
rename {examples => tests}/NIST_STRD/Nelson.dat (100%)
rename {examples => tests}/NIST_STRD/Rat42.dat (100%)
rename {examples => tests}/NIST_STRD/Rat43.dat (100%)
rename {examples => tests}/NIST_STRD/Roszman1.dat (100%)
rename {examples => tests}/NIST_STRD/Thurber.dat (100%)
create mode 100644 tests/lmfit_testutils.py
create mode 100644 tests/test_NIST_Strd.py
create mode 100644 tests/test_basicfit.py
create mode 100644 tests/test_bounds.py
create mode 100644 tests/test_multidatasets.py
create mode 100644 tests/test_stepmodel.py
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